ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart23b05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470282.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1203 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 393 gcgaaggacgcggcgtgggagaagacggagtctgccaaggacgcc 437 |||||||||||||||||||||||| ||||| | || ||||||||| Sbjct: 958 gcgaaggacgcggcgtgggagaaggcggaggcggcgaaggacgcc 1002 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 360 gcgaaggatgccgcagccgataaggccaaggccgcgaaggacgcggcgtgggagaagacg 419 |||||||| ||||| || || |||||| ||| ||||||||||||||| |||||||| || Sbjct: 838 gcgaaggacgccgcggcggagaaggccggggcggcgaaggacgcggcgcgggagaaggcg 897 Query: 420 gag 422 ||| Sbjct: 898 gag 900 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 360 gcgaaggatgccgcagccgataaggccaaggccgcgaaggacgcggcgtgggagaagac 418 |||||||| ||||| || || |||||| | | |||||||||||||||||||||||||| Sbjct: 772 gcgaaggacgccgcggcggagaaggccgggtcggcgaaggacgcggcgtgggagaagac 830
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 393 gcgaaggacgcggcgtgggagaagacggagtctgccaaggacgcc 437 |||||||||||||||||||||||| ||||| | || ||||||||| Sbjct: 3660461 gcgaaggacgcggcgtgggagaaggcggaggcggcgaaggacgcc 3660417 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 360 gcgaaggatgccgcagccgataaggccaaggccgcgaaggacgcggcgtgggagaagac 418 |||||||| ||||| || || |||||| | | |||||||||||||||||||||||||| Sbjct: 3660647 gcgaaggacgccgcggcggagaaggccgggtcggcgaaggacgcggcgtgggagaagac 3660589 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 360 gcgaaggatgccgcagccgataaggccaaggccgcgaaggacgcggcgtgggagaagacg 419 |||||||| ||||| || || |||||| ||| ||||||||||||||| |||||||| || Sbjct: 3660581 gcgaaggacgccgcggcggagaaggccggggcggcgaaggacgcggcgcgggagaaggcg 3660522 Query: 420 gag 422 ||| Sbjct: 3660521 gag 3660519
>gb|AC073556.11| Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete sequence Length = 160738 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 393 gcgaaggacgcggcgtgggagaagacggagtctgccaaggacgcc 437 |||||||||||||||||||||||| ||||| | || ||||||||| Sbjct: 120916 gcgaaggacgcggcgtgggagaaggcggaggcggcgaaggacgcc 120960 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 360 gcgaaggatgccgcagccgataaggccaaggccgcgaaggacgcggcgtgggagaagacg 419 |||||||| ||||| || || |||||| ||| ||||||||||||||| |||||||| || Sbjct: 120796 gcgaaggacgccgcggcggagaaggccggggcggcgaaggacgcggcgcgggagaaggcg 120855 Query: 420 gag 422 ||| Sbjct: 120856 gag 120858 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 360 gcgaaggatgccgcagccgataaggccaaggccgcgaaggacgcggcgtgggagaagac 418 |||||||| ||||| || || |||||| | | |||||||||||||||||||||||||| Sbjct: 120730 gcgaaggacgccgcggcggagaaggccgggtcggcgaaggacgcggcgtgggagaagac 120788
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 393 gcgaaggacgcggcgtgggagaagacggagtctgccaaggacgcc 437 |||||||||||||||||||||||| ||||| | || ||||||||| Sbjct: 3660572 gcgaaggacgcggcgtgggagaaggcggaggcggcgaaggacgcc 3660528 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 360 gcgaaggatgccgcagccgataaggccaaggccgcgaaggacgcggcgtgggagaagac 418 |||||||| ||||| || || |||||| | | |||||||||||||||||||||||||| Sbjct: 3660758 gcgaaggacgccgcggcggagaaggccgggtcggcgaaggacgcggcgtgggagaagac 3660700 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 360 gcgaaggatgccgcagccgataaggccaaggccgcgaaggacgcggcgtgggagaagacg 419 |||||||| ||||| || || |||||| ||| ||||||||||||||| |||||||| || Sbjct: 3660692 gcgaaggacgccgcggcggagaaggccggggcggcgaaggacgcggcgcgggagaaggcg 3660633 Query: 420 gag 422 ||| Sbjct: 3660632 gag 3660630
>dbj|AK121575.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036H02, full insert sequence Length = 1540 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 393 gcgaaggacgcggcgtgggagaagacggagtctgccaaggacgcc 437 |||||||||||||||||||||||| ||||| | || ||||||||| Sbjct: 1047 gcgaaggacgcggcgtgggagaaggcggaggcggcgaaggacgcc 1091 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 360 gcgaaggatgccgcagccgataaggccaaggccgcgaaggacgcggcgtgggagaagacg 419 |||||||| ||||| || || |||||| ||| ||||||||||||||| |||||||| || Sbjct: 927 gcgaaggacgccgcggcggagaaggccggggcggcgaaggacgcggcgcgggagaaggcg 986 Query: 420 gag 422 ||| Sbjct: 987 gag 989 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 360 gcgaaggatgccgcagccgataaggccaaggccgcgaaggacgcggcgtgggagaagac 418 |||||||| ||||| || || |||||| | | |||||||||||||||||||||||||| Sbjct: 861 gcgaaggacgccgcggcggagaaggccgggtcggcgaaggacgcggcgtgggagaagac 919
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29 Length = 283100 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Plus Query: 391 ccgcgaaggacgcggcgtgggagaagac 418 ||||||||||||||||| |||||||||| Sbjct: 253527 ccgcgaaggacgcggcgcgggagaagac 253554
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2 Length = 178000 Score = 48.1 bits (24), Expect = 0.030 Identities = 30/32 (93%) Strand = Plus / Plus Query: 371 cgcagccgataaggccaaggccgcgaaggacg 402 ||||||||| |||| ||||||||||||||||| Sbjct: 98106 cgcagccgagaaggacaaggccgcgaaggacg 98137
>emb|AJ767064.1| Burkholderia multivorans slyB operon Length = 2854 Score = 44.1 bits (22), Expect = 0.48 Identities = 40/46 (86%) Strand = Plus / Minus Query: 207 gccgcggagaaggcagcggcagcgaaggacgcagctgccaagaagg 252 |||||| ||||||||||| | |||||| | || ||||||||||||| Sbjct: 2706 gccgcgaagaaggcagcgccggcgaagaaggccgctgccaagaagg 2661 Score = 44.1 bits (22), Expect = 0.48 Identities = 40/46 (86%) Strand = Plus / Minus Query: 273 gccgcggagaaggcagcggcagcgaaggacgcagctgccaagaagg 318 |||||| ||||||||||| | |||||| | || ||||||||||||| Sbjct: 2706 gccgcgaagaaggcagcgccggcgaagaaggccgctgccaagaagg 2661 Score = 44.1 bits (22), Expect = 0.48 Identities = 40/46 (86%) Strand = Plus / Minus Query: 141 gccgcggagaaggcagcggcagcgaaggacgcagctgccaagaagg 186 |||||| ||||||||||| | |||||| | || ||||||||||||| Sbjct: 2706 gccgcgaagaaggcagcgccggcgaagaaggccgctgccaagaagg 2661
>gb|AY089703.2| Burkholderia multivorans histone-like protein Bph2 (bph2) gene, partial cds Length = 562 Score = 44.1 bits (22), Expect = 0.48 Identities = 40/46 (86%) Strand = Plus / Plus Query: 273 gccgcggagaaggcagcggcagcgaaggacgcagctgccaagaagg 318 |||||| ||||||||||| | |||||| | || ||||||||||||| Sbjct: 148 gccgcgaagaaggcagcgccggcgaagaaggccgctgccaagaagg 193 Score = 44.1 bits (22), Expect = 0.48 Identities = 40/46 (86%) Strand = Plus / Plus Query: 141 gccgcggagaaggcagcggcagcgaaggacgcagctgccaagaagg 186 |||||| ||||||||||| | |||||| | || ||||||||||||| Sbjct: 148 gccgcgaagaaggcagcgccggcgaagaaggccgctgccaagaagg 193 Score = 44.1 bits (22), Expect = 0.48 Identities = 40/46 (86%) Strand = Plus / Plus Query: 207 gccgcggagaaggcagcggcagcgaaggacgcagctgccaagaagg 252 |||||| ||||||||||| | |||||| | || ||||||||||||| Sbjct: 148 gccgcgaagaaggcagcgccggcgaagaaggccgctgccaagaagg 193
>ref|NM_192336.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 630 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 393 gcgaaggacgcggcgtgggag 413 ||||||||||||||||||||| Sbjct: 444 gcgaaggacgcggcgtgggag 464
>gb|AC078839.4| Oryza sativa (japonica cultivar-group) chromosome X clone OSJNBa0094J09, complete sequence Length = 168192 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 393 gcgaaggacgcggcgtgggag 413 ||||||||||||||||||||| Sbjct: 116940 gcgaaggacgcggcgtgggag 116920
>ref|XM_676919.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8742.2), mRNA Length = 3699 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 453 gagaagctcaagcaatacaacgacg 477 |||||||||||||||| |||||||| Sbjct: 2902 gagaagctcaagcaattcaacgacg 2926
>emb|AJ487977.1|EAE487977 Enterobacter aerogenes ampR gene for transcriptional activator protein AmpR and partial ampC gene for beta-lactamase precursor Length = 1316 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 444 caggcgcaggagaagctcaag 464 ||||||||||||||||||||| Sbjct: 774 caggcgcaggagaagctcaag 754
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 393 gcgaaggacgcggcgtgggag 413 ||||||||||||||||||||| Sbjct: 12317784 gcgaaggacgcggcgtgggag 12317764
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 393 gcgaaggacgcggcgtgggag 413 ||||||||||||||||||||| Sbjct: 14683151 gcgaaggacgcggcgtgggag 14683131
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 393 gcgaaggacgcggcgtgggag 413 ||||||||||||||||||||| Sbjct: 21756152 gcgaaggacgcggcgtgggag 21756172
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 393 gcgaaggacgcggcgtgggag 413 ||||||||||||||||||||| Sbjct: 26112978 gcgaaggacgcggcgtgggag 26112998 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 393 gcgaaggacgcggcgtgggag 413 ||||||||||||||||||||| Sbjct: 21337024 gcgaaggacgcggcgtgggag 21337044
>dbj|AP003340.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1316_H05 Length = 105346 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 393 gcgaaggacgcggcgtgggag 413 ||||||||||||||||||||| Sbjct: 18395 gcgaaggacgcggcgtgggag 18415
>dbj|AP003267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0496H05 Length = 147817 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 393 gcgaaggacgcggcgtgggag 413 ||||||||||||||||||||| Sbjct: 58962 gcgaaggacgcggcgtgggag 58982
>dbj|AP003234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0038D11 Length = 156465 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 393 gcgaaggacgcggcgtgggag 413 ||||||||||||||||||||| Sbjct: 116553 gcgaaggacgcggcgtgggag 116573
>dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0534A03 Length = 153170 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 393 gcgaaggacgcggcgtgggag 413 ||||||||||||||||||||| Sbjct: 73335 gcgaaggacgcggcgtgggag 73355
>dbj|AP004695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0474F07 Length = 136440 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 393 gcgaaggacgcggcgtgggag 413 ||||||||||||||||||||| Sbjct: 120855 gcgaaggacgcggcgtgggag 120835
>dbj|AP004256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1224_G08 Length = 113496 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 393 gcgaaggacgcggcgtgggag 413 ||||||||||||||||||||| Sbjct: 27730 gcgaaggacgcggcgtgggag 27710
>dbj|AK120894.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029O16, full insert sequence Length = 2056 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 393 gcgaaggacgcggcgtgggag 413 ||||||||||||||||||||| Sbjct: 59 gcgaaggacgcggcgtgggag 39
>dbj|AK071428.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092F23, full insert sequence Length = 2766 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 393 gcgaaggacgcggcgtgggag 413 ||||||||||||||||||||| Sbjct: 42 gcgaaggacgcggcgtgggag 22
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 393 gcgaaggacgcggcgtgggag 413 ||||||||||||||||||||| Sbjct: 12325124 gcgaaggacgcggcgtgggag 12325104
>ref|XM_466619.1| Oryza sativa (japonica cultivar-group), mRNA Length = 714 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 66 gccggcgccgccaaggacaccgccgcag 93 ||||||||||||| |||||||| ||||| Sbjct: 461 gccggcgccgccacggacaccggcgcag 434
>gb|AC134346.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0018A03, complete sequence Length = 146278 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gcggagaaggcagcggcagc 295 |||||||||||||||||||| Sbjct: 113934 gcggagaaggcagcggcagc 113915 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 gcggagaaggcagcggcagc 229 |||||||||||||||||||| Sbjct: 113934 gcggagaaggcagcggcagc 113915 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 gcggagaaggcagcggcagc 163 |||||||||||||||||||| Sbjct: 113934 gcggagaaggcagcggcagc 113915 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 gcggagaaggcagcggcagc 361 |||||||||||||||||||| Sbjct: 113934 gcggagaaggcagcggcagc 113915
>gb|BT016422.1| Zea mays clone Contig255 mRNA sequence Length = 1248 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 cagctgccaagaaggccggc 257 |||||||||||||||||||| Sbjct: 700 cagctgccaagaaggccggc 719 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 cagctgccaagaaggccggc 323 |||||||||||||||||||| Sbjct: 700 cagctgccaagaaggccggc 719 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cagctgccaagaaggccggc 191 |||||||||||||||||||| Sbjct: 700 cagctgccaagaaggccggc 719
>gb|BT018112.1| Zea mays clone EL01N0553G06.c mRNA sequence Length = 1005 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 cagctgccaagaaggccggc 323 |||||||||||||||||||| Sbjct: 655 cagctgccaagaaggccggc 674 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cagctgccaagaaggccggc 191 |||||||||||||||||||| Sbjct: 655 cagctgccaagaaggccggc 674 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 cagctgccaagaaggccggc 257 |||||||||||||||||||| Sbjct: 655 cagctgccaagaaggccggc 674
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence Length = 190721 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 393 gcgaaggacgcggcgtgggagaag 416 ||||||||||||||||||| |||| Sbjct: 24088 gcgaaggacgcggcgtgggggaag 24065
>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24 map S20116S, complete sequence Length = 174210 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 393 gcgaaggacgcggcgtgggagaag 416 ||||||||||||||||||| |||| Sbjct: 173553 gcgaaggacgcggcgtgggggaag 173530
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 cggcaccgccaagcaggcga 546 |||||||||||||||||||| Sbjct: 2388255 cggcaccgccaagcaggcga 2388274
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 230 gaaggacgcagctgccaagaaggc 253 ||||||||| |||||||||||||| Sbjct: 2360600 gaaggacgctgctgccaagaaggc 2360623 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 gaaggacgcagctgccaagaaggc 187 ||||||||| |||||||||||||| Sbjct: 2360600 gaaggacgctgctgccaagaaggc 2360623 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 gaaggacgcagctgccaagaaggc 319 ||||||||| |||||||||||||| Sbjct: 2360600 gaaggacgctgctgccaagaaggc 2360623 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 ggagaaagccggcggcgcca 132 |||||||||||||||||||| Sbjct: 2154 ggagaaagccggcggcgcca 2173
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 cgcggcgtgggagaagacgg 420 |||||||||||||||||||| Sbjct: 1025587 cgcggcgtgggagaagacgg 1025606
>gb|AC134407.6| Homo sapiens chromosome 17, clone RP11-855A2, complete sequence Length = 199875 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 acgctgaagcaaaccaagga 49 |||||||||||||||||||| Sbjct: 185958 acgctgaagcaaaccaagga 185939
>emb|AL596096.7| Mouse DNA sequence from clone RP23-42P20 on chromosome 11 Contains the 5' end of the Alox12e gene for epidermal arachidonate lipoxygenase, the gene for arachidonate 15-lipoxygenase, a novel pseudogene, two genes for novel proteins (4930563C04Rik, 1110030J09Rik), a Mitochondrial 28S ribosomal protein pseudogene, a NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 (Ndufb8) pseudogene, the gene for a novel protein similar to Beta-arrestin 2 (Arrestin, beta 2) (LOC216869), the Cxcl16 gene for chemokine (C-X-C motif) ligand 16, the gene for a novel protein similar to human zinc finger MYND domain containg 15 (ZMYND15), the 5' end of the gene for a novel protein (2010003F10Rik) and three CpG islands, complete sequence Length = 193277 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gcagagaaggcagcagcagc 109 |||||||||||||||||||| Sbjct: 79633 gcagagaaggcagcagcagc 79652
>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16 Length = 346879 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 384 gccaaggccgcgaaggacgcggcg 407 ||||||||||| |||||||||||| Sbjct: 243089 gccaaggccgccaaggacgcggcg 243112
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 486 gagaaggctggggacgtgaaggac 509 |||||||| ||||||||||||||| Sbjct: 151981 gagaaggcgggggacgtgaaggac 152004
>dbj|AK128966.1| Mus musculus cDNA fis, clone TRACH3013766 Length = 3466 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 gcagagaaggcagcagcagc 109 |||||||||||||||||||| Sbjct: 1139 gcagagaaggcagcagcagc 1120
>gb|AE011683.1| Xanthomonas axonopodis pv. citri str. 306, section 61 of 469 of the complete genome Length = 11877 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 gcggcagcgaaggatgccgcagcc 377 ||||| |||||||||||||||||| Sbjct: 2766 gcggcggcgaaggatgccgcagcc 2789
>dbj|AK005027.1| Mus musculus adult male liver cDNA, RIKEN full-length enriched library, clone:1300017A15 product:hypothetical Proline-rich region containing protein, full insert sequence Length = 3435 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 gcagagaaggcagcagcagc 109 |||||||||||||||||||| Sbjct: 1137 gcagagaaggcagcagcagc 1118
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 393 gcgaaggacgcggcgtgggagaag 416 ||||||||||||||||||| |||| Sbjct: 10635425 gcgaaggacgcggcgtgggggaag 10635402
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 393 gcgaaggacgcggcgtgggagaag 416 ||||||||||||||||||| |||| Sbjct: 3656416 gcgaaggacgcggcgtgggggaag 3656393
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gcggagaaggcagcggcagc 295 |||||||||||||||||||| Sbjct: 14963033 gcggagaaggcagcggcagc 14963014 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 gcggagaaggcagcggcagc 229 |||||||||||||||||||| Sbjct: 14963033 gcggagaaggcagcggcagc 14963014 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 gcggagaaggcagcggcagc 361 |||||||||||||||||||| Sbjct: 14963033 gcggagaaggcagcggcagc 14963014 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 gcggagaaggcagcggcagc 163 |||||||||||||||||||| Sbjct: 14963033 gcggagaaggcagcggcagc 14963014 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 agagaaggcagcagcagcca 111 |||||||||||||||||||| Sbjct: 149997 agagaaggcagcagcagcca 149978
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 66 gccggcgccgccaaggacaccgccgcag 93 ||||||||||||| |||||||| ||||| Sbjct: 23734263 gccggcgccgccacggacaccggcgcag 23734290
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 ctgcggagaaagccggcacc 533 |||||||||||||||||||| Sbjct: 970923 ctgcggagaaagccggcacc 970942
>dbj|AP004111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1058_F07 Length = 95841 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 66 gccggcgccgccaaggacaccgccgcag 93 ||||||||||||| |||||||| ||||| Sbjct: 44847 gccggcgccgccacggacaccggcgcag 44874
>dbj|AK065864.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044E05, full insert sequence Length = 1505 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 agagaaggcagcagcagcca 111 |||||||||||||||||||| Sbjct: 195 agagaaggcagcagcagcca 214
>gb|BC090328.1| Rattus norvegicus cDNA clone IMAGE:7123840, with apparent retained intron Length = 2932 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 aaggcagcagcagccaagga 115 |||||||||||||||||||| Sbjct: 1943 aaggcagcagcagccaagga 1924
>emb|CR354430.16| Zebrafish DNA sequence from clone CH211-218P2 in linkage group 25, complete sequence Length = 197231 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 ccaaggacgccacatggcag 446 |||||||||||||||||||| Sbjct: 152929 ccaaggacgccacatggcag 152910
>gb|BC057987.1| Mus musculus proline, glutamic acid and leucine rich protein 1, mRNA (cDNA clone IMAGE:5101120), partial cds Length = 2682 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 gcagagaaggcagcagcagc 109 |||||||||||||||||||| Sbjct: 367 gcagagaaggcagcagcagc 348
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 393 gcgaaggacgcggcgtgggagaag 416 ||||||||||||||||||| |||| Sbjct: 3665110 gcgaaggacgcggcgtgggggaag 3665087
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 393 gcgaaggacgcggcgtgggagaag 416 ||||||||||||||||||| |||| Sbjct: 10635307 gcgaaggacgcggcgtgggggaag 10635284
>emb|AL772419.4|CNS08C9X Oryza sativa chromosome 12, . BAC OJ1115_G02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 112916 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 393 gcgaaggacgcggcgtgggagaag 416 ||||||||||||||||||| |||| Sbjct: 98728 gcgaaggacgcggcgtgggggaag 98705
>emb|AL831795.4|CNS08CA8 Oryza sativa chromosome 12, . BAC OSJNBb0085N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135105 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 393 gcgaaggacgcggcgtgggagaag 416 ||||||||||||||||||| |||| Sbjct: 504 gcgaaggacgcggcgtgggggaag 481
>emb|CR936841.11| Mouse DNA sequence from clone DN-491F10 on chromosome 11, complete sequence Length = 114510 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gcagagaaggcagcagcagc 109 |||||||||||||||||||| Sbjct: 31473 gcagagaaggcagcagcagc 31492
>ref|NM_029231.2| Mus musculus proline, glutamic acid and leucine rich protein 1 (Pelp1), mRNA Length = 3435 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 gcagagaaggcagcagcagc 109 |||||||||||||||||||| Sbjct: 1137 gcagagaaggcagcagcagc 1118
>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12, complete sequence Length = 160603 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 agagaaggcagcagcagcca 111 |||||||||||||||||||| Sbjct: 32181 agagaaggcagcagcagcca 32162
>gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0036D10, complete sequence Length = 156772 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 agagaaggcagcagcagcca 111 |||||||||||||||||||| Sbjct: 149997 agagaaggcagcagcagcca 149978 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,715,009 Number of Sequences: 3902068 Number of extensions: 4715009 Number of successful extensions: 94174 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92500 Number of HSP's gapped (non-prelim): 1674 length of query: 548 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 525 effective length of database: 17,143,297,704 effective search space: 9000231294600 effective search space used: 9000231294600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
