ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart23a10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK103346.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126D12, full insert sequence Length = 1629 Score = 333 bits (168), Expect = 4e-88 Identities = 310/356 (87%), Gaps = 1/356 (0%) Strand = Plus / Plus Query: 243 ggcgtcgccggcgcgctgggcctctctgtcacgtcgtcagtagccactgtcatctgcaac 302 ||||||||||| || ||||| | || ||||||||||| || || | |||||||||||| Sbjct: 269 ggcgtcgccggggctctggggatgtcggtcacgtcgtcggtggctattgtcatctgcaat 328 Query: 303 aagtacctcatgagcacccttaagttctacttcgcgacgacactgacaagctggcacttg 362 |||||||| || |||||||| |||| |||||||||||| ||||| ||||||||| || Sbjct: 329 aagtaccttatcagcaccctgggcttcttcttcgcgacgacgctgacgagctggcacctg 388 Query: 363 ctggtcaccttctgcacgcttcacatagcgcagcgtctgcgcttcttcgaggcgaagcca 422 |||| |||||||||||||| || | |||||||| ||||| ||||||||||||||||| Sbjct: 389 atggtgaccttctgcacgctgtacgtcgcgcagcggctgcggttcttcgaggcgaagccg 448 Query: 423 attgacgcgcagactgtcatctcctttgggtttctcaacgggatctccattggcctcctc 482 || || |||||||| ||||||||||| ||| | ||||| || |||||||||||||||||| Sbjct: 449 atcgatgcgcagaccgtcatctccttcgggctgctcaatggtatctccattggcctcctc 508 Query: 483 aacctttgccttggcttcaactcagttggcttctaccagatgaccaagttggccattata 542 |||||||||||||| ||||||||||||||||||||||||||||||||| |||| || ||| Sbjct: 509 aacctttgccttggattcaactcagttggcttctaccagatgaccaagctggctatcata 568 Query: 543 ccattcaccatgctcttggagaccatctttctgagc-agaagttcagccagagcat 597 |||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||| Sbjct: 569 ccattcaccatgctcttggaaaccatctttcttagcaagaagttcagccggagcat 624
>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete sequence Length = 178692 Score = 202 bits (102), Expect = 9e-49 Identities = 165/186 (88%) Strand = Plus / Minus Query: 336 gcgacgacactgacaagctggcacttgctggtcaccttctgcacgcttcacatagcgcag 395 |||||||| ||||| ||||||||| || |||| |||||||||||||| || | |||||| Sbjct: 173578 gcgacgacgctgacgagctggcacctgatggtgaccttctgcacgctgtacgtcgcgcag 173519 Query: 396 cgtctgcgcttcttcgaggcgaagccaattgacgcgcagactgtcatctcctttgggttt 455 || ||||| ||||||||||||||||| || || |||||||| ||||||||||| ||| | Sbjct: 173518 cggctgcggttcttcgaggcgaagccgatcgatgcgcagaccgtcatctccttcgggctg 173459 Query: 456 ctcaacgggatctccattggcctcctcaacctttgccttggcttcaactcagttggcttc 515 ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 173458 ctcaatggtatctccattggcctcctcaacctttgccttggattcaactcagttggcttc 173399 Query: 516 taccag 521 |||||| Sbjct: 173398 taccag 173393 Score = 85.7 bits (43), Expect = 2e-13 Identities = 65/71 (91%), Gaps = 1/71 (1%) Strand = Plus / Minus Query: 519 cagatgaccaagttggccattataccattcaccatgctcttggagaccatctttctgagc 578 |||||||||||| |||| || ||||||||||||||||||||||| ||||||||||| ||| Sbjct: 173313 cagatgaccaagctggctatcataccattcaccatgctcttggaaaccatctttcttagc 173254 Query: 579 -agaagttcag 588 |||||||||| Sbjct: 173253 aagaagttcag 173243 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 243 ggcgtcgccggcgcgctgggcctctctgtcacgtcgtcagtagccactgtcatctgcaac 302 ||||||||||| || ||||| | || ||||||||||| || || | |||||||||||| Sbjct: 173847 ggcgtcgccggggctctggggatgtcggtcacgtcgtcggtggctattgtcatctgcaat 173788 Query: 303 aagtacctcatgagcaccct 322 |||||||| || |||||||| Sbjct: 173787 aagtaccttatcagcaccct 173768
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 202 bits (102), Expect = 9e-49 Identities = 165/186 (88%) Strand = Plus / Plus Query: 336 gcgacgacactgacaagctggcacttgctggtcaccttctgcacgcttcacatagcgcag 395 |||||||| ||||| ||||||||| || |||| |||||||||||||| || | |||||| Sbjct: 17501053 gcgacgacgctgacgagctggcacctgatggtgaccttctgcacgctgtacgtcgcgcag 17501112 Query: 396 cgtctgcgcttcttcgaggcgaagccaattgacgcgcagactgtcatctcctttgggttt 455 || ||||| ||||||||||||||||| || || |||||||| ||||||||||| ||| | Sbjct: 17501113 cggctgcggttcttcgaggcgaagccgatcgatgcgcagaccgtcatctccttcgggctg 17501172 Query: 456 ctcaacgggatctccattggcctcctcaacctttgccttggcttcaactcagttggcttc 515 ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 17501173 ctcaatggtatctccattggcctcctcaacctttgccttggattcaactcagttggcttc 17501232 Query: 516 taccag 521 |||||| Sbjct: 17501233 taccag 17501238 Score = 85.7 bits (43), Expect = 2e-13 Identities = 65/71 (91%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 519 cagatgaccaagttggccattataccattcaccatgctcttggagaccatctttctgagc 578 |||||||||||| |||| || ||||||||||||||||||||||| ||||||||||| ||| Sbjct: 17501318 cagatgaccaagctggctatcataccattcaccatgctcttggaaaccatctttcttagc 17501377 Query: 579 -agaagttcag 588 |||||||||| Sbjct: 17501378 aagaagttcag 17501388 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 243 ggcgtcgccggcgcgctgggcctctctgtcacgtcgtcagtagccactgtcatctgcaac 302 ||||||||||| || ||||| | || ||||||||||| || || | |||||||||||| Sbjct: 17500784 ggcgtcgccggggctctggggatgtcggtcacgtcgtcggtggctattgtcatctgcaat 17500843 Query: 303 aagtacctcatgagcaccct 322 |||||||| || |||||||| Sbjct: 17500844 aagtaccttatcagcaccct 17500863 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 15680523 ccagatgaccaagttggcca 15680542
>gb|AC037425.7|AC037425 Oryza sativa chromosome 10 BAC OSJNBa0055P24 genomic sequence, complete sequence Length = 134058 Score = 202 bits (102), Expect = 9e-49 Identities = 165/186 (88%) Strand = Plus / Plus Query: 336 gcgacgacactgacaagctggcacttgctggtcaccttctgcacgcttcacatagcgcag 395 |||||||| ||||| ||||||||| || |||| |||||||||||||| || | |||||| Sbjct: 130048 gcgacgacgctgacgagctggcacctgatggtgaccttctgcacgctgtacgtcgcgcag 130107 Query: 396 cgtctgcgcttcttcgaggcgaagccaattgacgcgcagactgtcatctcctttgggttt 455 || ||||| ||||||||||||||||| || || |||||||| ||||||||||| ||| | Sbjct: 130108 cggctgcggttcttcgaggcgaagccgatcgatgcgcagaccgtcatctccttcgggctg 130167 Query: 456 ctcaacgggatctccattggcctcctcaacctttgccttggcttcaactcagttggcttc 515 ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 130168 ctcaatggtatctccattggcctcctcaacctttgccttggattcaactcagttggcttc 130227 Query: 516 taccag 521 |||||| Sbjct: 130228 taccag 130233 Score = 85.7 bits (43), Expect = 2e-13 Identities = 65/71 (91%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 519 cagatgaccaagttggccattataccattcaccatgctcttggagaccatctttctgagc 578 |||||||||||| |||| || ||||||||||||||||||||||| ||||||||||| ||| Sbjct: 130313 cagatgaccaagctggctatcataccattcaccatgctcttggaaaccatctttcttagc 130372 Query: 579 -agaagttcag 588 |||||||||| Sbjct: 130373 aagaagttcag 130383 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 243 ggcgtcgccggcgcgctgggcctctctgtcacgtcgtcagtagccactgtcatctgcaac 302 ||||||||||| || ||||| | || ||||||||||| || || | |||||||||||| Sbjct: 129779 ggcgtcgccggggctctggggatgtcggtcacgtcgtcggtggctattgtcatctgcaat 129838 Query: 303 aagtacctcatgagcaccct 322 |||||||| || |||||||| Sbjct: 129839 aagtaccttatcagcaccct 129858
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 202 bits (102), Expect = 9e-49 Identities = 165/186 (88%) Strand = Plus / Plus Query: 336 gcgacgacactgacaagctggcacttgctggtcaccttctgcacgcttcacatagcgcag 395 |||||||| ||||| ||||||||| || |||| |||||||||||||| || | |||||| Sbjct: 17510093 gcgacgacgctgacgagctggcacctgatggtgaccttctgcacgctgtacgtcgcgcag 17510152 Query: 396 cgtctgcgcttcttcgaggcgaagccaattgacgcgcagactgtcatctcctttgggttt 455 || ||||| ||||||||||||||||| || || |||||||| ||||||||||| ||| | Sbjct: 17510153 cggctgcggttcttcgaggcgaagccgatcgatgcgcagaccgtcatctccttcgggctg 17510212 Query: 456 ctcaacgggatctccattggcctcctcaacctttgccttggcttcaactcagttggcttc 515 ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 17510213 ctcaatggtatctccattggcctcctcaacctttgccttggattcaactcagttggcttc 17510272 Query: 516 taccag 521 |||||| Sbjct: 17510273 taccag 17510278 Score = 85.7 bits (43), Expect = 2e-13 Identities = 65/71 (91%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 519 cagatgaccaagttggccattataccattcaccatgctcttggagaccatctttctgagc 578 |||||||||||| |||| || ||||||||||||||||||||||| ||||||||||| ||| Sbjct: 17510358 cagatgaccaagctggctatcataccattcaccatgctcttggaaaccatctttcttagc 17510417 Query: 579 -agaagttcag 588 |||||||||| Sbjct: 17510418 aagaagttcag 17510428 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 243 ggcgtcgccggcgcgctgggcctctctgtcacgtcgtcagtagccactgtcatctgcaac 302 ||||||||||| || ||||| | || ||||||||||| || || | |||||||||||| Sbjct: 17509824 ggcgtcgccggggctctggggatgtcggtcacgtcgtcggtggctattgtcatctgcaat 17509883 Query: 303 aagtacctcatgagcaccct 322 |||||||| || |||||||| Sbjct: 17509884 aagtaccttatcagcaccct 17509903 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 15688764 ccagatgaccaagttggcca 15688783
>dbj|AK109405.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-H02, full insert sequence Length = 1142 Score = 143 bits (72), Expect = 8e-31 Identities = 100/108 (92%), Gaps = 1/108 (0%) Strand = Plus / Plus Query: 491 ccttggcttcaactcagttggcttctaccagatgaccaagttggccattataccattcac 550 |||||| ||||||||||||||||||||||||||||||||| |||| || ||||||||||| Sbjct: 1 ccttggattcaactcagttggcttctaccagatgaccaagctggctatcataccattcac 60 Query: 551 catgctcttggagaccatctttctgagc-agaagttcagccagagcat 597 |||||||||||| ||||||||||| ||| |||||||||||| |||||| Sbjct: 61 catgctcttggaaaccatctttcttagcaagaagttcagccggagcat 108
>ref|NM_197026.1| Oryza sativa (japonica cultivar-group) putative glucose-6-phosphate/phosphate-translocator (OSJNBa0055P24.11), mRNA Length = 1335 Score = 131 bits (66), Expect = 3e-27 Identities = 162/194 (83%) Strand = Plus / Plus Query: 243 ggcgtcgccggcgcgctgggcctctctgtcacgtcgtcagtagccactgtcatctgcaac 302 ||||||||||| || ||||| | || ||||||||||| || || | |||||||||||| Sbjct: 59 ggcgtcgccggggctctggggatgtcggtcacgtcgtcggtggctattgtcatctgcaat 118 Query: 303 aagtacctcatgagcacccttaagttctacttcgcgacgacactgacaagctggcacttg 362 |||||||| || |||||||| |||| |||||||||||| ||||| ||||||||| || Sbjct: 119 aagtaccttatcagcaccctgggcttcttcttcgcgacgacgctgacgagctggcacctg 178 Query: 363 ctggtcaccttctgcacgcttcacatagcgcagcgtctgcgcttcttcgaggcgaagcca 422 |||| |||||||||||||| || | |||||||| ||||| ||||||||||||||||| Sbjct: 179 atggtgaccttctgcacgctgtacgtcgcgcagcggctgcggttcttcgaggcgaagccg 238 Query: 423 attgacgcgcagac 436 || || |||||||| Sbjct: 239 atcgatgcgcagac 252 Score = 89.7 bits (45), Expect = 1e-14 Identities = 70/77 (90%), Gaps = 1/77 (1%) Strand = Plus / Plus Query: 522 atgaccaagttggccattataccattcaccatgctcttggagaccatctttctgagc-ag 580 ||||||||| |||| || ||||||||||||||||||||||| ||||||||||| ||| || Sbjct: 254 atgaccaagctggctatcataccattcaccatgctcttggaaaccatctttcttagcaag 313 Query: 581 aagttcagccagagcat 597 |||||||||| |||||| Sbjct: 314 aagttcagccggagcat 330
>dbj|AK067824.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119D13, full insert sequence Length = 2151 Score = 61.9 bits (31), Expect = 2e-06 Identities = 106/131 (80%) Strand = Plus / Plus Query: 446 ctttgggtttctcaacgggatctccattggcctcctcaacctttgccttggcttcaactc 505 ||||||||| || || || | ||| |||||||| ||||||||| | | || |||||||| Sbjct: 522 ctttgggttgctgaatggcacctcaattggccttctcaaccttagtttaggattcaactc 581 Query: 506 agttggcttctaccagatgaccaagttggccattataccattcaccatgctcttggagac 565 |||| |||||||||||||| || ||||| || ||||| ||||| |||| |||||||| Sbjct: 582 cattggattctaccagatgacaaaattggcgatcatacctttcactgtgctgttggagac 641 Query: 566 catctttctga 576 ||||| |||| Sbjct: 642 aatcttcctga 652
>gb|AY110153.1| Zea mays CL6402_-1 mRNA sequence Length = 590 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 465 atctccattggcctcctcaacctttgccttggcttcaactcagttggcttctaccagatg 524 ||||||||||| ||||||||| | | |||||||||||||| ||||| || ||||||||| Sbjct: 490 atctccattgggctcctcaacttgagtcttggcttcaactctgttgggttttaccagatg 549 Query: 525 accaagttggc 535 || ||| |||| Sbjct: 550 actaagctggc 560
>ref|XM_466859.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1572 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 508 ttggcttctaccagatgaccaagttggccattataccattcaccatgctcttggagacca 567 |||| |||||||||||||| ||||||||||| ||||| ||||| | | |||||||||| Sbjct: 486 ttggattctaccagatgacaaagttggccatcatacccttcacagtaatgttggagacca 545 Query: 568 tctt 571 |||| Sbjct: 546 tctt 549
>dbj|AK070820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023066G14, full insert sequence Length = 1571 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 508 ttggcttctaccagatgaccaagttggccattataccattcaccatgctcttggagacca 567 |||| |||||||||||||| ||||||||||| ||||| ||||| | | |||||||||| Sbjct: 485 ttggattctaccagatgacaaagttggccatcatacccttcacagtaatgttggagacca 544 Query: 568 tctt 571 |||| Sbjct: 545 tctt 548
>dbj|AK059676.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-G11, full insert sequence Length = 1091 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 508 ttggcttctaccagatgaccaagttggccattataccattcaccatgctcttggagacca 567 |||| |||||||||||||| ||||||||||| ||||| ||||| | | |||||||||| Sbjct: 234 ttggattctaccagatgacaaagttggccatcatacccttcacagtaatgttggagacca 293 Query: 568 tctt 571 |||| Sbjct: 294 tctt 297
>ref|XM_806725.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508625.60) partial mRNA Length = 1080 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 476 cctcctcaacctttgccttggctt 499 |||||||||||||||||||||||| Sbjct: 364 cctcctcaacctttgccttggctt 341
>dbj|AK065618.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028M22, full insert sequence Length = 1713 Score = 48.1 bits (24), Expect = 0.033 Identities = 66/80 (82%) Strand = Plus / Plus Query: 456 ctcaacgggatctccattggcctcctcaacctttgccttggcttcaactcagttggcttc 515 ||||| || ||||||||||||||||||||| | | ||||| || || || ||||| || Sbjct: 463 ctcaatggcatctccattggcctcctcaacttgagtcttggttttaattctgttggattt 522 Query: 516 taccagatgaccaagttggc 535 ||||||||||| ||| |||| Sbjct: 523 taccagatgacaaagctggc 542
>dbj|AB060277.1| Oryza sativa GPT mRNA for putative glucose-6-phosphate/phosphate-tranlocator, complete cds Length = 1065 Score = 48.1 bits (24), Expect = 0.033 Identities = 66/80 (82%) Strand = Plus / Plus Query: 456 ctcaacgggatctccattggcctcctcaacctttgccttggcttcaactcagttggcttc 515 ||||| || ||||||||||||||||||||| | | ||||| || || || ||||| || Sbjct: 244 ctcaatggcatctccattggcctcctcaacttgagtcttggttttaattctgttggattt 303 Query: 516 taccagatgaccaagttggc 535 ||||||||||| ||| |||| Sbjct: 304 taccagatgacaaagctggc 323
>gb|AC021233.9| Homo sapiens chromosome 11, clone RP11-215H22, complete sequence Length = 159641 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 172 agaggggacagagagaaagaggt 194 ||||||||||||||||||||||| Sbjct: 91372 agaggggacagagagaaagaggt 91350
>dbj|BS000211.1| Pan troglodytes chromosome 22 clone:PTB-017A17, map 22, complete sequences Length = 129385 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 573 ctgagcagaagttcagccagagc 595 ||||||||||||||||||||||| Sbjct: 62452 ctgagcagaagttcagccagagc 62430
>dbj|AP001697.1| Homo sapiens genomic DNA, chromosome 21q, section 41/105 Length = 340000 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 573 ctgagcagaagttcagccagagc 595 ||||||||||||||||||||||| Sbjct: 130899 ctgagcagaagttcagccagagc 130877
>dbj|AP001598.1| Homo sapiens genomic DNA, chromosome 21, clone:KB2043D3, APP-D21S292 region, complete sequence Length = 171038 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 573 ctgagcagaagttcagccagagc 595 ||||||||||||||||||||||| Sbjct: 64918 ctgagcagaagttcagccagagc 64896
>gb|AC144741.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0086E02, complete sequence Length = 150474 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Minus Query: 456 ctcaacgggatctccattggcctcctcaac 485 ||||| || ||||||||||||||||||||| Sbjct: 137498 ctcaatggcatctccattggcctcctcaac 137469
>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04, complete sequence Length = 136713 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Minus Query: 456 ctcaacgggatctccattggcctcctcaac 485 ||||| || ||||||||||||||||||||| Sbjct: 35665 ctcaatggcatctccattggcctcctcaac 35636
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Minus Query: 456 ctcaacgggatctccattggcctcctcaac 485 ||||| || ||||||||||||||||||||| Sbjct: 4060971 ctcaatggcatctccattggcctcctcaac 4060942 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 ccattataccattcaccatgc 555 ||||||||||||||||||||| Sbjct: 2037370 ccattataccattcaccatgc 2037390
>gb|DQ023304.1| Aegilops tauschii beta1 proteasome-7D gene, complete cds Length = 6037 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 38 cacctcggccccgaacccccga 59 |||||||||||||||||||||| Sbjct: 1170 cacctcggccccgaacccccga 1191
>gb|AC161435.7| Mus musculus chromosome 8, clone RP23-78L21, complete sequence Length = 219937 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 agagaaagaggttcagaagac 203 ||||||||||||||||||||| Sbjct: 180465 agagaaagaggttcagaagac 180485
>ref|NM_184525.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1692 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 290 tgtcatctgcaacaagtacctcatgagcaccct 322 |||||||||||||||| |||||||||| |||| Sbjct: 344 tgtcatctgcaacaaggccctcatgagctccct 376 Score = 40.1 bits (20), Expect = 8.1 Identities = 38/44 (86%) Strand = Plus / Plus Query: 498 ttcaactcagttggcttctaccagatgaccaagttggccattat 541 ||||| || ||||| |||||||||||||| ||| |||| ||||| Sbjct: 552 ttcaattctgttggtttctaccagatgacaaagctggcaattat 595
>gb|AC151843.3| Mus musculus BAC clone RP23-88K14 from chromosome 10, complete sequence Length = 268516 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 172 agaggggacagagagaaagag 192 ||||||||||||||||||||| Sbjct: 7060 agaggggacagagagaaagag 7040
>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07, complete sequence Length = 151399 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 ccattataccattcaccatgc 555 ||||||||||||||||||||| Sbjct: 130247 ccattataccattcaccatgc 130267
>gb|AC124573.4| Mus musculus BAC clone RP23-159F13 from 10, complete sequence Length = 191206 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 172 agaggggacagagagaaagag 192 ||||||||||||||||||||| Sbjct: 62513 agaggggacagagagaaagag 62493
>gb|AC125204.4| Mus musculus BAC clone RP23-237H8 from 10, complete sequence Length = 198473 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 172 agaggggacagagagaaagag 192 ||||||||||||||||||||| Sbjct: 188947 agaggggacagagagaaagag 188927
>emb|AL365195.17| Human DNA sequence from clone RP11-451E16 on chromosome 9, complete sequence Length = 88920 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 gaggggacagagagaaagagg 193 ||||||||||||||||||||| Sbjct: 8704 gaggggacagagagaaagagg 8684
>gb|AC069226.19| Homo sapiens 3 BAC RP11-426J22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187303 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 571 ttctgagcagaagttcagcca 591 ||||||||||||||||||||| Sbjct: 64415 ttctgagcagaagttcagcca 64435
>gb|AC095030.2| Homo sapiens chromosome 1 clone RP11-375A5, complete sequence Length = 142007 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 aggggacagagagaaagaggt 194 ||||||||||||||||||||| Sbjct: 33375 aggggacagagagaaagaggt 33355
>gb|AC093575.2| Homo sapiens chromosome 1 clone RP11-40C18, complete sequence Length = 159238 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 aggggacagagagaaagaggt 194 ||||||||||||||||||||| Sbjct: 148750 aggggacagagagaaagaggt 148730
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 519 cagatgaccaagttggccattataccattcaccatgctcttggagaccatctt 571 |||||||| ||||||||||| ||||| ||||| | | |||||||||||||| Sbjct: 25139265 cagatgacaaagttggccatcatacccttcacagtaatgttggagaccatctt 25139317
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 290 tgtcatctgcaacaagtacctcatgagcaccct 322 |||||||||||||||| |||||||||| |||| Sbjct: 3448729 tgtcatctgcaacaaggccctcatgagctccct 3448697 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 acgaggagaaagacgacgac 24 |||||||||||||||||||| Sbjct: 37142115 acgaggagaaagacgacgac 37142134
>gb|AC008197.3|AC008197 Drosophila melanogaster, chromosome 3R, region 94B-94C, BAC clone BACR02L12, complete sequence Length = 178931 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 172 agaggggacagagagaaagag 192 ||||||||||||||||||||| Sbjct: 43794 agaggggacagagagaaagag 43774
>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0701D05 Length = 172161 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 290 tgtcatctgcaacaagtacctcatgagcaccct 322 |||||||||||||||| |||||||||| |||| Sbjct: 127099 tgtcatctgcaacaaggccctcatgagctccct 127067
>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1276_B06 Length = 175174 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 290 tgtcatctgcaacaagtacctcatgagcaccct 322 |||||||||||||||| |||||||||| |||| Sbjct: 16797 tgtcatctgcaacaaggccctcatgagctccct 16765
>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1469H02 Length = 136602 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 519 cagatgaccaagttggccattataccattcaccatgctcttggagaccatctt 571 |||||||| ||||||||||| ||||| ||||| | | |||||||||||||| Sbjct: 39658 cagatgacaaagttggccatcatacccttcacagtaatgttggagaccatctt 39710
>dbj|AK119227.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-A03, full insert sequence Length = 1692 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 290 tgtcatctgcaacaagtacctcatgagcaccct 322 |||||||||||||||| |||||||||| |||| Sbjct: 344 tgtcatctgcaacaaggccctcatgagctccct 376 Score = 40.1 bits (20), Expect = 8.1 Identities = 38/44 (86%) Strand = Plus / Plus Query: 498 ttcaactcagttggcttctaccagatgaccaagttggccattat 541 ||||| || ||||| |||||||||||||| ||| |||| ||||| Sbjct: 552 ttcaattctgttggtttctaccagatgacaaagctggcaattat 595
>dbj|AK062253.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G05, full insert sequence Length = 1690 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 290 tgtcatctgcaacaagtacctcatgagcaccct 322 |||||||||||||||| |||||||||| |||| Sbjct: 344 tgtcatctgcaacaaggccctcatgagctccct 376 Score = 40.1 bits (20), Expect = 8.1 Identities = 38/44 (86%) Strand = Plus / Plus Query: 498 ttcaactcagttggcttctaccagatgaccaagttggccattat 541 ||||| || ||||| |||||||||||||| ||| |||| ||||| Sbjct: 552 ttcaattctgttggtttctaccagatgacaaagctggcaattat 595
>gb|AE003739.3| Drosophila melanogaster chromosome 3R, section 77 of 118 of the complete sequence Length = 224856 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 172 agaggggacagagagaaagag 192 ||||||||||||||||||||| Sbjct: 177304 agaggggacagagagaaagag 177284
>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0028E10 Length = 140791 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 290 tgtcatctgcaacaagtacctcatgagcaccct 322 |||||||||||||||| |||||||||| |||| Sbjct: 35489 tgtcatctgcaacaaggccctcatgagctccct 35457
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ggcgtcgccggcgcgctgggc 263 ||||||||||||||||||||| Sbjct: 1133910 ggcgtcgccggcgcgctgggc 1133930
>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08, complete sequence Length = 112268 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 ccattataccattcaccatgc 555 ||||||||||||||||||||| Sbjct: 4211 ccattataccattcaccatgc 4231
>gb|AC153080.4| Colobus guereza clone CH272-279A15, complete sequence Length = 141541 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 acagagagaaagaggttcag 198 |||||||||||||||||||| Sbjct: 86502 acagagagaaagaggttcag 86521
>gb|AC154516.2| Mus musculus BAC clone RP24-83D23 from chromosome 14, complete sequence Length = 216566 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gaggggacagagagaaagag 192 |||||||||||||||||||| Sbjct: 32367 gaggggacagagagaaagag 32348
>ref|NM_196745.1| Oryza sativa (japonica cultivar-group) putative ubiquitin carrier protein (OSJNBa0094K20.20), mRNA Length = 2823 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 754 ccagatgaccaagttggcca 735
>ref|NM_190688.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1101 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 acgaggagaaagacgacgac 24 |||||||||||||||||||| Sbjct: 100 acgaggagaaagacgacgac 81
>ref|XM_469604.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1431 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 688 ccagatgaccaagttggcca 669
>ref|XM_471466.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 888 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 637 ccagatgaccaagttggcca 618
>gb|AC137922.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0046A04, complete sequence Length = 141001 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 68438 ccagatgaccaagttggcca 68457
>gb|AC135956.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0005H20, complete sequence Length = 135560 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 131752 ccagatgaccaagttggcca 131771
>gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007C02, complete sequence Length = 148265 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 27751 ccagatgaccaagttggcca 27732
>gb|AC109646.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017K22, complete sequence Length = 176399 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 14531 ccagatgaccaagttggcca 14550 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 2671 ccagatgaccaagttggcca 2690
>gb|AC136843.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094M06, complete sequence Length = 135583 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 126385 ccagatgaccaagttggcca 126404
>gb|AC129219.3| Mus musculus BAC clone RP24-474C15 from chromosome 14, complete sequence Length = 195935 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gaggggacagagagaaagag 192 |||||||||||||||||||| Sbjct: 110047 gaggggacagagagaaagag 110028
>gb|AY446894.1| Human herpesvirus 5 strain Merlin, complete genome Length = 235645 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 cgaggagaaagacgacgactcctc 29 ||||||| |||||||||||||||| Sbjct: 41203 cgaggaggaagacgacgactcctc 41180
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 29354218 ccagatgaccaagttggcca 29354199
>gb|AY486471.1|AY486470S02 Human herpesvirus 5 strain Toledo genome, partial sequence Length = 12146 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 cgaggagaaagacgacgactcctc 29 ||||||| |||||||||||||||| Sbjct: 8769 cgaggaggaagacgacgactcctc 8746
>gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genomic sequence, complete sequence Length = 139788 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 1782 ccagatgaccaagttggcca 1801
>gb|AF474129.1| Sorghum bicolor typical P-type R2R3 Myb protein (Myb42) gene, partial cds Length = 1357 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ctcctctcccgccccacctc 43 |||||||||||||||||||| Sbjct: 13 ctcctctcccgccccacctc 32
>gb|AC146999.1| Human Herpesvirus 5 AD169-BAC isolate, complete sequence Length = 233739 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cgaggagaaagacgacgactcctc 29 ||||||| |||||||||||||||| Sbjct: 180995 cgaggaggaagacgacgactcctc 181018
>gb|AC146907.1| Human Herpesvirus 5 FIX-BAC isolate, complete sequence Length = 229209 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cgaggagaaagacgacgactcctc 29 ||||||| |||||||||||||||| Sbjct: 186974 cgaggaggaagacgacgactcctc 186997
>gb|AC146906.1| Human Herpesvirus 5 TR-BAC isolate, complete sequence Length = 234881 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 cgaggagaaagacgacgactcctc 29 ||||||| |||||||||||||||| Sbjct: 76899 cgaggaggaagacgacgactcctc 76876
>gb|AC146905.1| Human Herpesvirus 5 Toledo-BAC isolate, complete sequence Length = 226889 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cgaggagaaagacgacgactcctc 29 ||||||| |||||||||||||||| Sbjct: 182405 cgaggaggaagacgacgactcctc 182428
>gb|AC146904.1| Human Herpesvirus 5 PH-BAC isolate, complete sequence Length = 229700 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cgaggagaaagacgacgactcctc 29 ||||||| |||||||||||||||| Sbjct: 187060 cgaggaggaagacgacgactcctc 187083
>gb|AC146851.1| Human Herpesvirus 5 Towne-BAC isolate, complete sequence Length = 229483 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 cgaggagaaagacgacgactcctc 29 ||||||| |||||||||||||||| Sbjct: 71720 cgaggaggaagacgacgactcctc 71697
>gb|AY315197.1| Human herpesvirus 5 strain Towne, complete genome Length = 231236 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 cgaggagaaagacgacgactcctc 29 ||||||| |||||||||||||||| Sbjct: 39766 cgaggaggaagacgacgactcctc 39743
>ref|XM_803949.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510963.39) partial mRNA Length = 1080 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 476 cctcctcaacctttgccttggctt 499 ||||||||||||||||||| |||| Sbjct: 364 cctcctcaacctttgcctttgctt 341
>emb|CR726339.2|CNS0GNE1 Tetraodon nigroviridis full-length cDNA Length = 1294 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 16 gacgacgactcctctcccgcccca 39 |||||||||||||||||| ||||| Sbjct: 97 gacgacgactcctctcccccccca 74
>emb|Z82250.1|HSN86D4 Human DNA sequence from clone LL22NC03-86D4 on chromosome 22, complete sequence Length = 39000 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gaggggacagagagaaagag 192 |||||||||||||||||||| Sbjct: 19368 gaggggacagagagaaagag 19349
>emb|AL358789.22| Human DNA sequence from clone RP11-507C22 on chromosome 1 Contains the 5' end of the MCOLN2 gene for mucolipin 2, the MCOLN3 gene for mucolipin 3, the gene for testis development protein NYD-SP29 (NYD-SP29) and two CpG islands, complete sequence Length = 165799 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 ttcaactcagttggcttcta 517 |||||||||||||||||||| Sbjct: 121974 ttcaactcagttggcttcta 121993
>emb|AL356119.31| Human DNA sequence from clone RP5-856H7 on chromosome 6 Contains the 5' part of the alternatively spliced gene for the human orthologs of mouse QKI-7 and QKI-7B (KH Domain RNA Binding proteins) and zebrafish ZKQ-1 (Quaking protein homolog) and a CpG island, complete sequence Length = 75152 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 ctctcccgccccacctcggccccg 50 ||||||||||||||||| |||||| Sbjct: 22858 ctctcccgccccacctccgccccg 22881
>emb|AL157386.14| Human DNA sequence from clone RP11-170J3 on chromosome 10 Contains part of the SUFU gene for suppressor of fused homolog (Drosophila) and a 60S ribosomal protein L23a (RPL23A) pseudogene, complete sequence Length = 72536 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 511 gcttctaccagatgaccaagttgg 534 |||||||||| ||||||||||||| Sbjct: 59771 gcttctaccacatgaccaagttgg 59794
>emb|AL139101.13| Human DNA sequence from clone RP3-414L4 on chromosome 6 Contains the 3' end of the TIAM2 gene for T-cell lymphoma invasion and metastasis 2 (SIF and Tiam 1-like exchange factor (STEF)), the CLDN20 gene for claudin 20, the TFB1M gene for transcription factor B1, mitochondrial (CGI-75 protein homolog of yeast mitochondrial transcription factor BCGI75 (mtTFB, CGI-75)), the 5' end of a novel gene and two CpG islands, complete sequence Length = 116256 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 ccttggcttcaactcagttg 510 |||||||||||||||||||| Sbjct: 43739 ccttggcttcaactcagttg 43758
>emb|AL137028.9| Human DNA sequence from clone RP11-476I15 on chromosome 20 Contains the 3' end of the C20orf36 gene, a capicua homolog (Drosophila) (CIC) pseudogene, the C20orf69 gene and two CpG islands, complete sequence Length = 59425 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 248 cgccggcgcgctgggcctctctgt 271 |||||||||| ||||||||||||| Sbjct: 11747 cgccggcgcggtgggcctctctgt 11770
>emb|X17403.1|HEHCMVCG Human cytomegalovirus strain AD169 complete genome Length = 229354 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 cgaggagaaagacgacgactcctc 29 ||||||| |||||||||||||||| Sbjct: 40855 cgaggaggaagacgacgactcctc 40832
>emb|AL928625.5| Mouse DNA sequence from clone RP24-528P17 on chromosome 4, complete sequence Length = 170639 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gaggggacagagagaaagag 192 |||||||||||||||||||| Sbjct: 150985 gaggggacagagagaaagag 151004
>emb|BX284692.14| Zebrafish DNA sequence from clone CH211-282O22 in linkage group 17, complete sequence Length = 162970 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 agaggggacagagagaaaga 191 |||||||||||||||||||| Sbjct: 86876 agaggggacagagagaaaga 86895
>emb|CR601496.1| full-length cDNA clone CS0DI062YF05 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 891 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 ctctcccgccccacctcggccccg 50 ||||||||||||||||| |||||| Sbjct: 175 ctctcccgccccacctccgccccg 152
>dbj|AB108321.1| Phleum pratense DNA, SSR, microsatellite B02-F09 Length = 451 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 acgaggagaaagacgacgac 24 |||||||||||||||||||| Sbjct: 137 acgaggagaaagacgacgac 118
>ref|XM_945487.1| PREDICTED: Homo sapiens hypothetical protein LOC652427 (LOC652427), mRNA Length = 1759 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 ctctcccgccccacctcggccccg 50 ||||||||||||||||| |||||| Sbjct: 1440 ctctcccgccccacctccgccccg 1463
>ref|XM_931426.1| PREDICTED: Homo sapiens hypothetical protein LOC643234 (LOC643234), mRNA Length = 1684 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 ctctcccgccccacctcggccccg 50 ||||||||||||||||| |||||| Sbjct: 1440 ctctcccgccccacctccgccccg 1463
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 11167175 ccagatgaccaagttggcca 11167156
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 15097264 ccagatgaccaagttggcca 15097283
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 15959841 ccagatgaccaagttggcca 15959860 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 11866711 ccagatgaccaagttggcca 11866730
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 24893494 ccagatgaccaagttggcca 24893475 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 13622936 ccagatgaccaagttggcca 13622955 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 13197302 ccagatgaccaagttggcca 13197321
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 17677850 ccagatgaccaagttggcca 17677831
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 29445640 ccagatgaccaagttggcca 29445621
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ggaccggcaccggcacgaac 148 |||||||||||||||||||| Sbjct: 2886139 ggaccggcaccggcacgaac 2886120
>gb|AC025907.2|AC025907 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0094K20, complete sequence Length = 193119 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 167889 ccagatgaccaagttggcca 167908
>dbj|AP006458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0072I06 Length = 162411 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 77126 ccagatgaccaagttggcca 77107
>gb|AF309642.1|AF309642 Human herpesvirus 5 UL32 (UL32) gene, complete cds Length = 3141 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cgaggagaaagacgacgactcctc 29 ||||||| |||||||||||||||| Sbjct: 2139 cgaggaggaagacgacgactcctc 2162
>dbj|AP003794.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489B03 Length = 150381 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 acgaggagaaagacgacgac 24 |||||||||||||||||||| Sbjct: 16771 acgaggagaaagacgacgac 16790
>dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0683F02 Length = 153388 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 acgaggagaaagacgacgac 24 |||||||||||||||||||| Sbjct: 143256 acgaggagaaagacgacgac 143275
>dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0066B06 Length = 154025 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 115629 ccagatgaccaagttggcca 115648
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 cgtggaccggcaccggcacg 145 |||||||||||||||||||| Sbjct: 3311153 cgtggaccggcaccggcacg 3311134
>dbj|AP003951.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1288_C01 Length = 111223 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 55748 ccagatgaccaagttggcca 55729
>dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0084P08 Length = 158656 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 90555 ccagatgaccaagttggcca 90574
>dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0493C06 Length = 158923 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 127945 ccagatgaccaagttggcca 127926
>gb|AE005003.1| Halobacterium sp. NRC-1 section 34 of 170 of the complete genome Length = 14379 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 gggcgtcgccggcgcgctgg 261 |||||||||||||||||||| Sbjct: 11697 gggcgtcgccggcgcgctgg 11678
>dbj|AK064334.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-G07, full insert sequence Length = 1741 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 acgaggagaaagacgacgac 24 |||||||||||||||||||| Sbjct: 264 acgaggagaaagacgacgac 245
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 tcgccggcgcgctgggcctc 266 |||||||||||||||||||| Sbjct: 3223482 tcgccggcgcgctgggcctc 3223501
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 16053023 ccagatgaccaagttggcca 16053042 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 16041163 ccagatgaccaagttggcca 16041182 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 11945118 ccagatgaccaagttggcca 11945137
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 15051547 ccagatgaccaagttggcca 15051566
>emb|AL731637.2|OSJN00278 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0115I09, complete sequence Length = 141580 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 35799 ccagatgaccaagttggcca 35780
>emb|AL713938.2|CNS07YPK Oryza sativa chromosome 12, . BAC OJ1372_C12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 113071 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 36681 ccagatgaccaagttggcca 36700
>emb|AL669970.10| Human DNA sequence from clone RP11-473E2 on chromosome 9, complete sequence Length = 169247 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 caagagcctagaggggacagagag 186 ||||||||||||| |||||||||| Sbjct: 40921 caagagcctagagtggacagagag 40898
>gb|DQ303444.1| Homo sapiens retinoid X receptor, alpha (RXRA) gene, partial cds Length = 42959 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 caagagcctagaggggacagagag 186 ||||||||||||| |||||||||| Sbjct: 34014 caagagcctagagtggacagagag 33991
>gb|U45884.1|LMU45884 Leishmania mexicana mexicana paraflagellar rod protein (PFR-2C) gene, complete cds Length = 5468 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gcggagaacgtggaccggca 137 |||||||||||||||||||| Sbjct: 2582 gcggagaacgtggaccggca 2601
>emb|X92745.1|HCMVUL32 Human cytomegalovirus UL32 gene Length = 1176 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cgaggagaaagacgacgactcctc 29 ||||||| |||||||||||||||| Sbjct: 1035 cgaggaggaagacgacgactcctc 1058
>emb|AL731693.9| Mouse DNA sequence from clone RP23-233O1 on chromosome X, complete sequence Length = 177997 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ctagaggggacagagagaaa 189 |||||||||||||||||||| Sbjct: 103661 ctagaggggacagagagaaa 103680
>emb|AL669950.11| Mouse DNA sequence from clone RP23-14C19 on chromosome X, complete sequence Length = 207256 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 atctcctttgggtttctcaa 460 |||||||||||||||||||| Sbjct: 25715 atctcctttgggtttctcaa 25734
>gb|M16022.1|HS5PP150 Human cytomegalovirus (HCMV) large phosphoprotein 150 (pp150) gene, complete cds Length = 6360 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cgaggagaaagacgacgactcctc 29 ||||||| |||||||||||||||| Sbjct: 2662 cgaggaggaagacgacgactcctc 2685
>dbj|AP004336.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0498D08, complete sequence Length = 53801 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 ccagatgaccaagttggcca 537 |||||||||||||||||||| Sbjct: 13624 ccagatgaccaagttggcca 13643 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,532,130 Number of Sequences: 3902068 Number of extensions: 4532130 Number of successful extensions: 96724 Number of sequences better than 10.0: 116 Number of HSP's better than 10.0 without gapping: 120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95562 Number of HSP's gapped (non-prelim): 1152 length of query: 597 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 574 effective length of database: 17,143,297,704 effective search space: 9840252882096 effective search space used: 9840252882096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
