No.
Definition
Score (bits)
E Value
1 ref|XM_473283.1| Oryza sativa (japonica cultivar-group), predic...
109
1e-20
2 ref|XM_473289.1| Oryza sativa (japonica cultivar-group), predic...
107
4e-20
3 emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4,...
107
4e-20
4 emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4,...
107
4e-20
5 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
107
4e-20
6 ref|XM_473287.1| Oryza sativa (japonica cultivar-group), predic...
103
7e-19
7 dbj|AK109281.1| Oryza sativa (japonica cultivar-group) cDNA clon...
103
7e-19
8 ref|XM_473284.1| Oryza sativa (japonica cultivar-group), predic...
101
3e-18
9 dbj|AK071069.1| Oryza sativa (japonica cultivar-group) cDNA clon...
101
3e-18
10 gb|AY109840.1| Zea mays CL5708_1 mRNA sequence
90
1e-14
11 gb|BT016438.1| Zea mays clone Contig271 mRNA sequence
74
6e-10
12 gb|AY107601.1| Zea mays PCO136665 mRNA sequence
68
4e-08
13 emb|AL138762.20| Human DNA sequence from clone RP11-179B2 on chr...
42
2.1
14 gb|AC027510.7| Homo sapiens chromosome 18, clone RP11-118I2, com...
42
2.1
15 gb|AC105104.7| Homo sapiens chromosome 18, clone RP11-909J22, co...
42
2.1
16 emb|AJ538832.1|NTA538832 Nicotiana tabacum cDNA-AFLP-fragment BT...
42
2.1
17 ref|XM_471642.1| Oryza sativa (japonica cultivar-group), predic...
40
8.3
18 gb|BC016250.1| Mus musculus CDC42 effector protein (Rho GTPase b...
40
8.3
19 gb|BC083130.1| Mus musculus CDC42 effector protein (Rho GTPase b...
40
8.3
20 gb|AY728217.1| Eurycea bislineata mitochondrion, complete genome
40
8.3
21 ref|NM_027219.1| Mus musculus CDC42 effector protein (Rho GTPase...
40
8.3
22 ref|XM_754645.1| Ustilago maydis 521 hypothetical protein (UM035...
40
8.3
23 gb|AY300162.1| Mentha x piperita (-)-isopiperitenone reductase m...
40
8.3
24 gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
40
8.3
25 gb|AC016383.11| Homo sapiens chromosome 18, clone RP11-25O3, com...
40
8.3
26 gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
40
8.3
27 dbj|AB228191.1| Aspergillus oryzae cDNA, contig sequence: AoEST5064
40
8.3
28 dbj|AP007158.1| Aspergillus oryzae RIB40 genomic DNA, 47Q_0172
40
8.3
29 dbj|AK007896.1| Mus musculus 10 day old male pancreas cDNA, RIKE...
40
8.3
30 dbj|AK111082.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
8.3
31 gb|AY288138.1| Mentha x piperita menthol dehydrogenase mRNA, com...
40
8.3
32 dbj|AP002436.4| Homo sapiens genomic DNA, chromosome 11 clone:RP...
40
8.3
33 dbj|AK115254.1| Ciona intestinalis cDNA, clone:cieg041j20, full ...
40
8.3
34 emb|AL592169.14| Mouse DNA sequence from clone RP23-305P10 on ch...
40
8.3
>emb|AL663006.3 |OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24,
complete sequence
Length = 121056
Score = 107 bits (54), Expect = 4e-20
Identities = 93/106 (87%)
Strand = Plus / Plus
Query: 192 ttgctgtggtcaccggtgggagcaaagggatcgggctggaggcgtgcaagcagctggccg 251
|||||||||||||||| || | ||||| |||||||||||||| |||| |||||||||||
Sbjct: 30677 ttgctgtggtcaccggcggcaacaaagagatcgggctggaggtgtgccggcagctggccg 30736
Query: 252 gtagaggcatcacggtcgttctgacggccagggacgagacgagggg 297
||||||||||| |||||||||||||||||||||||||||||
Sbjct: 30737 ccgacggcatcacggttgttctgacggccagggacgagacgagggg 30782
Score = 99.6 bits (50), Expect = 1e-17
Identities = 92/106 (86%)
Strand = Plus / Minus
Query: 192 ttgctgtggtcaccggtgggagcaaagggatcgggctggaggcgtgcaagcagctggccg 251
|||||||||||||||| || | |||||||||||| ||||||| |||| ||||||||| |
Sbjct: 5148 ttgctgtggtcaccggcggcaacaaagggatcggactggaggtgtgccggcagctggctg 5089
Query: 252 gtagaggcatcacggtcgttctgacggccagggacgagacgagggg 297
||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5088 ccgacggcatcacggtggttctgacggccagggacgagacgagggg 5043
Score = 89.7 bits (45), Expect = 1e-14
Identities = 159/197 (80%)
Strand = Plus / Minus
Query: 188 aggattgctgtggtcaccggtgggagcaaagggatcgggctggaggcgtgcaagcagctg 247
||||||||||| |||||||| |||| ||| |||||||||||||||| |||| |||||||
Sbjct: 26284 aggattgctgtagtcaccggcgggaacaaggggatcgggctggaggtgtgccggcagctg 26225
Query: 248 gccggtagaggcatcacggtcgttctgacggccagggacgagacgaggggaacggcggct 307
||||| | ||| ||| |||||| |||| |||||||||||| ||| ||| |||||||
Sbjct: 26224 gccggcaacggcgccaccgtcgttttgacagccagggacgaggcgaagggcgcggcggcc 26165
Query: 308 gtggagcagatcaaacggctgggccactcggatgtcattttccatcagttagacatcacg 367
|| ||| || || | ||||||| | ||| |||||| ||||| ||| | || |||||
Sbjct: 26164 gtcgagaagctccacgggctggggctctccagtgtcatcttccaccagctggatgtcacg 26105
Query: 368 gatgcttccagcatcgc 384
|| ||||||||||||||
Sbjct: 26104 gacgcttccagcatcgc 26088
Score = 54.0 bits (27), Expect = 6e-04
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 564 agacgtacgaaactgcaaagcagggcctgcagacgaactacta 606
|||||||||| ||||||||| | ||| ||||||||||||||||
Sbjct: 31311 agacgtacgacactgcaaagaacggcgtgcagacgaactacta 31353
Score = 46.1 bits (23), Expect = 0.13
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 560 cgacagacgtacgaaactgcaaagcagggcctgcagacgaactacta 606
|||||||||||||| |||||||| |||||| |||||||||||||
Sbjct: 25598 cgacagacgtacgacgctgcaaaggccggcctgaagacgaactacta 25552
Score = 40.1 bits (20), Expect = 8.3
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 564 agacgtacgaaactgcaaagcagggcctgcagacgaactactac 607
|||||||||| | |||||| | ||| |||||||||||||||||
Sbjct: 4534 agacgtacgacgccgcaaagaacggcgtgcagacgaactactac 4491
>emb|AL662984.3 |OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
complete sequence
Length = 140454
Score = 107 bits (54), Expect = 4e-20
Identities = 93/106 (87%)
Strand = Plus / Plus
Query: 192 ttgctgtggtcaccggtgggagcaaagggatcgggctggaggcgtgcaagcagctggccg 251
|||||||||||||||| || | ||||| |||||||||||||| |||| |||||||||||
Sbjct: 128005 ttgctgtggtcaccggcggcaacaaagagatcgggctggaggtgtgccggcagctggccg 128064
Query: 252 gtagaggcatcacggtcgttctgacggccagggacgagacgagggg 297
||||||||||| |||||||||||||||||||||||||||||
Sbjct: 128065 ccgacggcatcacggttgttctgacggccagggacgagacgagggg 128110
Score = 107 bits (54), Expect = 4e-20
Identities = 93/106 (87%)
Strand = Plus / Plus
Query: 192 ttgctgtggtcaccggtgggagcaaagggatcgggctggaggcgtgcaagcagctggccg 251
|||||||||||||||| || | |||||||||||||||||||| |||| |||||||||||
Sbjct: 94026 ttgctgtggtcaccggcggcaacaaagggatcgggctggaggtgtgccggcagctggccg 94085
Query: 252 gtagaggcatcacggtcgttctgacggccagggacgagacgagggg 297
||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 94086 ccgacggcatcacggttgttctgacagccagggacgagacgagggg 94131
Score = 99.6 bits (50), Expect = 1e-17
Identities = 92/106 (86%)
Strand = Plus / Minus
Query: 192 ttgctgtggtcaccggtgggagcaaagggatcgggctggaggcgtgcaagcagctggccg 251
|||||||||||||||| || | |||||||||||| ||||||| |||| ||||||||| |
Sbjct: 102476 ttgctgtggtcaccggcggcaacaaagggatcggactggaggtgtgccggcagctggctg 102417
Query: 252 gtagaggcatcacggtcgttctgacggccagggacgagacgagggg 297
||||||||||| |||||||||||||||||||||||||||||
Sbjct: 102416 ccgacggcatcacggtggttctgacggccagggacgagacgagggg 102371
Score = 89.7 bits (45), Expect = 1e-14
Identities = 159/197 (80%)
Strand = Plus / Minus
Query: 188 aggattgctgtggtcaccggtgggagcaaagggatcgggctggaggcgtgcaagcagctg 247
||||||||||| |||||||| |||| ||| |||||||||||||||| |||| |||||||
Sbjct: 123612 aggattgctgtagtcaccggcgggaacaaggggatcgggctggaggtgtgccggcagctg 123553
Query: 248 gccggtagaggcatcacggtcgttctgacggccagggacgagacgaggggaacggcggct 307
||||| | ||| ||| |||||| |||| |||||||||||| ||| ||| |||||||
Sbjct: 123552 gccggcaacggcgccaccgtcgttttgacagccagggacgaggcgaagggcgcggcggcc 123493
Query: 308 gtggagcagatcaaacggctgggccactcggatgtcattttccatcagttagacatcacg 367
|| ||| || || | ||||||| | ||| |||||| ||||| ||| | || |||||
Sbjct: 123492 gtcgagaagctccacgggctggggctctccagtgtcatcttccaccagctggatgtcacg 123433
Query: 368 gatgcttccagcatcgc 384
|| ||||||||||||||
Sbjct: 123432 gacgcttccagcatcgc 123416
Score = 54.0 bits (27), Expect = 6e-04
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 564 agacgtacgaaactgcaaagcagggcctgcagacgaactacta 606
|||||||||| ||||||||| | ||| ||||||||||||||||
Sbjct: 128639 agacgtacgacactgcaaagaacggcgtgcagacgaactacta 128681
Score = 46.1 bits (23), Expect = 0.13
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 560 cgacagacgtacgaaactgcaaagcagggcctgcagacgaactacta 606
|||||||||||||| |||||||| |||||| |||||||||||||
Sbjct: 122926 cgacagacgtacgacgctgcaaaggccggcctgaagacgaactacta 122880
Score = 40.1 bits (20), Expect = 8.3
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 564 agacgtacgaaactgcaaagcagggcctgcagacgaactactac 607
|||||||||| | |||||| | ||| |||||||||||||||||
Sbjct: 101862 agacgtacgacgccgcaaagaacggcgtgcagacgaactactac 101819
Score = 40.1 bits (20), Expect = 8.3
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 564 agacgtacgaaactgcaaagcagggcctgcagacgaactactac 607
|||||||||| | |||||| | ||| |||||||||||||||||
Sbjct: 94634 agacgtacgacgccgcaaagaacggcgtgcagacgaactactac 94677
>dbj|AP008210.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 107 bits (54), Expect = 4e-20
Identities = 93/106 (87%)
Strand = Plus / Plus
Query: 192 ttgctgtggtcaccggtgggagcaaagggatcgggctggaggcgtgcaagcagctggccg 251
|||||||||||||||| || | ||||| |||||||||||||| |||| |||||||||||
Sbjct: 26591119 ttgctgtggtcaccggcggcaacaaagagatcgggctggaggtgtgccggcagctggccg 26591178
Query: 252 gtagaggcatcacggtcgttctgacggccagggacgagacgagggg 297
||||||||||| |||||||||||||||||||||||||||||
Sbjct: 26591179 ccgacggcatcacggttgttctgacggccagggacgagacgagggg 26591224
Score = 107 bits (54), Expect = 4e-20
Identities = 93/106 (87%)
Strand = Plus / Plus
Query: 192 ttgctgtggtcaccggtgggagcaaagggatcgggctggaggcgtgcaagcagctggccg 251
|||||||||||||||| || | |||||||||||||||||||| |||| |||||||||||
Sbjct: 26557140 ttgctgtggtcaccggcggcaacaaagggatcgggctggaggtgtgccggcagctggccg 26557199
Query: 252 gtagaggcatcacggtcgttctgacggccagggacgagacgagggg 297
||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 26557200 ccgacggcatcacggttgttctgacagccagggacgagacgagggg 26557245
Score = 99.6 bits (50), Expect = 1e-17
Identities = 92/106 (86%)
Strand = Plus / Minus
Query: 192 ttgctgtggtcaccggtgggagcaaagggatcgggctggaggcgtgcaagcagctggccg 251
|||||||||||||||| || | |||||||||||| ||||||| |||| ||||||||| |
Sbjct: 26565590 ttgctgtggtcaccggcggcaacaaagggatcggactggaggtgtgccggcagctggctg 26565531
Query: 252 gtagaggcatcacggtcgttctgacggccagggacgagacgagggg 297
||||||||||| |||||||||||||||||||||||||||||
Sbjct: 26565530 ccgacggcatcacggtggttctgacggccagggacgagacgagggg 26565485
Score = 89.7 bits (45), Expect = 1e-14
Identities = 159/197 (80%)
Strand = Plus / Minus
Query: 188 aggattgctgtggtcaccggtgggagcaaagggatcgggctggaggcgtgcaagcagctg 247
||||||||||| |||||||| |||| ||| |||||||||||||||| |||| |||||||
Sbjct: 26586726 aggattgctgtagtcaccggcgggaacaaggggatcgggctggaggtgtgccggcagctg 26586667
Query: 248 gccggtagaggcatcacggtcgttctgacggccagggacgagacgaggggaacggcggct 307
||||| | ||| ||| |||||| |||| |||||||||||| ||| ||| |||||||
Sbjct: 26586666 gccggcaacggcgccaccgtcgttttgacagccagggacgaggcgaagggcgcggcggcc 26586607
Query: 308 gtggagcagatcaaacggctgggccactcggatgtcattttccatcagttagacatcacg 367
|| ||| || || | ||||||| | ||| |||||| ||||| ||| | || |||||
Sbjct: 26586606 gtcgagaagctccacgggctggggctctccagtgtcatcttccaccagctggatgtcacg 26586547
Query: 368 gatgcttccagcatcgc 384
|| ||||||||||||||
Sbjct: 26586546 gacgcttccagcatcgc 26586530
Score = 54.0 bits (27), Expect = 6e-04
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 564 agacgtacgaaactgcaaagcagggcctgcagacgaactacta 606
|||||||||| ||||||||| | ||| ||||||||||||||||
Sbjct: 26591753 agacgtacgacactgcaaagaacggcgtgcagacgaactacta 26591795
Score = 46.1 bits (23), Expect = 0.13
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 560 cgacagacgtacgaaactgcaaagcagggcctgcagacgaactacta 606
|||||||||||||| |||||||| |||||| |||||||||||||
Sbjct: 26586040 cgacagacgtacgacgctgcaaaggccggcctgaagacgaactacta 26585994
Score = 40.1 bits (20), Expect = 8.3
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 564 agacgtacgaaactgcaaagcagggcctgcagacgaactactac 607
|||||||||| | |||||| | ||| |||||||||||||||||
Sbjct: 26564976 agacgtacgacgccgcaaagaacggcgtgcagacgaactactac 26564933
Score = 40.1 bits (20), Expect = 8.3
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 564 agacgtacgaaactgcaaagcagggcctgcagacgaactactac 607
|||||||||| | |||||| | ||| |||||||||||||||||
Sbjct: 26557748 agacgtacgacgccgcaaagaacggcgtgcagacgaactactac 26557791
>emb|AL592169.14 | Mouse DNA sequence from clone RP23-305P10 on chromosome 15, complete
sequence
Length = 161985
Score = 40.1 bits (20), Expect = 8.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 acacccctgccagctcccgc 20
||||||||||||||||||||
Sbjct: 75201 acacccctgccagctcccgc 75220
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,078,122
Number of Sequences: 3902068
Number of extensions: 4078122
Number of successful extensions: 99747
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 99573
Number of HSP's gapped (non-prelim): 168
length of query: 611
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 588
effective length of database: 17,143,297,704
effective search space: 10080259049952
effective search space used: 10080259049952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)