ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart23a05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196821.1| Oryza sativa (japonica cultivar-group) putative PGPD14 protein (pollen germination related protein) (OSJNBa0018F16.5), mRNA Length = 1263 Score = 420 bits (212), Expect = e-114 Identities = 347/392 (88%) Strand = Plus / Plus Query: 189 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 248 |||||||||||||||||||||||||||||| | |||||||| ||||||| ||||||||| Sbjct: 153 gagcagcacggctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggc 212 Query: 249 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 308 ||||| ||||||||| |||||||||||||| | || ||||||||||||||| | | || Sbjct: 213 gaggtgttcggctgcaggcattgccacaacgaggccaagaattcgctcgagatccatctc 272 Query: 309 ctcgaccggcacgacatcccccgccacgaaatcagcaaggtcatctgctctctctgcaac 368 ||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||| || Sbjct: 273 aatgaccgtcacgagatcccccgccacgaaatcaagaaggttatctgctctctctgcgac 332 Query: 369 aaagaacaggatgtgcagaagaactgctccggatgtggggcatgcatggggaaatacttc 428 |||||||||||||| || || |||| || || ||||||||||||||||||||||||||| Sbjct: 333 aaagaacaggatgtacaacagtactgttctggttgtggggcatgcatggggaaatacttc 392 Query: 429 tgtgaaaaatgcaacttctttgacgatgatatctcaaagaaccagtatcactgcgatgga 488 || |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct: 393 tgcgaaaaatgcaacttctttgatgatgatgtctcaaagaaccagtatcactgcgatgga 452 Query: 489 tgcggcatctgcagaactggtggcatggacaatttcttccactgcgaaaaatgcgggtgt 548 |||||||| |||||||||||||| |||| || ||||| |||||||| |||||||||||| Sbjct: 453 tgcggcatatgcagaactggtggtgtggataagttctttcactgcgacaaatgcgggtgt 512 Query: 549 tgctacagcaatgttttgaaggactctcatca 580 |||||||| ||||| |||| ||| |||||||| Sbjct: 513 tgctacagtaatgtcttgagggattctcatca 544
>dbj|AK104810.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G01, full insert sequence Length = 1284 Score = 420 bits (212), Expect = e-114 Identities = 347/392 (88%) Strand = Plus / Plus Query: 189 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 248 |||||||||||||||||||||||||||||| | |||||||| ||||||| ||||||||| Sbjct: 163 gagcagcacggctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggc 222 Query: 249 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 308 ||||| ||||||||| |||||||||||||| | || ||||||||||||||| | | || Sbjct: 223 gaggtgttcggctgcaggcattgccacaacgaggccaagaattcgctcgagatccatctc 282 Query: 309 ctcgaccggcacgacatcccccgccacgaaatcagcaaggtcatctgctctctctgcaac 368 ||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||| || Sbjct: 283 aatgaccgtcacgagatcccccgccacgaaatcaagaaggttatctgctctctctgcgac 342 Query: 369 aaagaacaggatgtgcagaagaactgctccggatgtggggcatgcatggggaaatacttc 428 |||||||||||||| || || |||| || || ||||||||||||||||||||||||||| Sbjct: 343 aaagaacaggatgtacaacagtactgttctggttgtggggcatgcatggggaaatacttc 402 Query: 429 tgtgaaaaatgcaacttctttgacgatgatatctcaaagaaccagtatcactgcgatgga 488 || |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct: 403 tgcgaaaaatgcaacttctttgatgatgatgtctcaaagaaccagtatcactgcgatgga 462 Query: 489 tgcggcatctgcagaactggtggcatggacaatttcttccactgcgaaaaatgcgggtgt 548 |||||||| |||||||||||||| |||| || ||||| |||||||| |||||||||||| Sbjct: 463 tgcggcatatgcagaactggtggtgtggataagttctttcactgcgacaaatgcgggtgt 522 Query: 549 tgctacagcaatgttttgaaggactctcatca 580 |||||||| ||||| |||| ||| |||||||| Sbjct: 523 tgctacagtaatgtcttgagggattctcatca 554
>dbj|AK072693.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142C17, full insert sequence Length = 1095 Score = 420 bits (212), Expect = e-114 Identities = 347/392 (88%) Strand = Plus / Plus Query: 189 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 248 |||||||||||||||||||||||||||||| | |||||||| ||||||| ||||||||| Sbjct: 164 gagcagcacggctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggc 223 Query: 249 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 308 ||||| ||||||||| |||||||||||||| | || ||||||||||||||| | | || Sbjct: 224 gaggtgttcggctgcaggcattgccacaacgaggccaagaattcgctcgagatccatctc 283 Query: 309 ctcgaccggcacgacatcccccgccacgaaatcagcaaggtcatctgctctctctgcaac 368 ||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||| || Sbjct: 284 aatgaccgtcacgagatcccccgccacgaaatcaagaaggttatctgctctctctgcgac 343 Query: 369 aaagaacaggatgtgcagaagaactgctccggatgtggggcatgcatggggaaatacttc 428 |||||||||||||| || || |||| || || ||||||||||||||||||||||||||| Sbjct: 344 aaagaacaggatgtacaacagtactgttctggttgtggggcatgcatggggaaatacttc 403 Query: 429 tgtgaaaaatgcaacttctttgacgatgatatctcaaagaaccagtatcactgcgatgga 488 || |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct: 404 tgcgaaaaatgcaacttctttgatgatgatgtctcaaagaaccagtatcactgcgatgga 463 Query: 489 tgcggcatctgcagaactggtggcatggacaatttcttccactgcgaaaaatgcgggtgt 548 |||||||| |||||||||||||| |||| || ||||| |||||||| |||||||||||| Sbjct: 464 tgcggcatatgcagaactggtggtgtggataagttctttcactgcgacaaatgcgggtgt 523 Query: 549 tgctacagcaatgttttgaaggactctcatca 580 |||||||| ||||| |||| ||| |||||||| Sbjct: 524 tgctacagtaatgtcttgagggattctcatca 555
>dbj|AK071137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077E12, full insert sequence Length = 1283 Score = 420 bits (212), Expect = e-114 Identities = 347/392 (88%) Strand = Plus / Plus Query: 189 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 248 |||||||||||||||||||||||||||||| | |||||||| ||||||| ||||||||| Sbjct: 167 gagcagcacggctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggc 226 Query: 249 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 308 ||||| ||||||||| |||||||||||||| | || ||||||||||||||| | | || Sbjct: 227 gaggtgttcggctgcaggcattgccacaacgaggccaagaattcgctcgagatccatctc 286 Query: 309 ctcgaccggcacgacatcccccgccacgaaatcagcaaggtcatctgctctctctgcaac 368 ||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||| || Sbjct: 287 aatgaccgtcacgagatcccccgccacgaaatcaagaaggttatctgctctctctgcgac 346 Query: 369 aaagaacaggatgtgcagaagaactgctccggatgtggggcatgcatggggaaatacttc 428 |||||||||||||| || || |||| || || ||||||||||||||||||||||||||| Sbjct: 347 aaagaacaggatgtacaacagtactgttctggttgtggggcatgcatggggaaatacttc 406 Query: 429 tgtgaaaaatgcaacttctttgacgatgatatctcaaagaaccagtatcactgcgatgga 488 || |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct: 407 tgcgaaaaatgcaacttctttgatgatgatgtctcaaagaaccagtatcactgcgatgga 466 Query: 489 tgcggcatctgcagaactggtggcatggacaatttcttccactgcgaaaaatgcgggtgt 548 |||||||| |||||||||||||| |||| || ||||| |||||||| |||||||||||| Sbjct: 467 tgcggcatatgcagaactggtggtgtggataagttctttcactgcgacaaatgcgggtgt 526 Query: 549 tgctacagcaatgttttgaaggactctcatca 580 |||||||| ||||| |||| ||| |||||||| Sbjct: 527 tgctacagtaatgtcttgagggattctcatca 558
>gb|BT016752.1| Zea mays clone Contig585 mRNA sequence Length = 1421 Score = 236 bits (119), Expect = 7e-59 Identities = 284/339 (83%) Strand = Plus / Plus Query: 233 ggcgccctgctgcggcgaggtcttcggctgccggcattgccacaaccaagctaagaattc 292 |||||||||||||||| ||| |||||||||||| |||||||||||| | || ||||| || Sbjct: 382 ggcgccctgctgcggccaggccttcggctgccgccattgccacaacgacgccaagaactc 441 Query: 293 gctcgaggtggacgtcctcgaccggcacgacatcccccgccacgaaatcagcaaggtcat 352 ||| ||||| ||| | |||||||||||| ||||||||||||||||| | ||||| || Sbjct: 442 gctggaggtcgacccgcgcgaccggcacgagatcccccgccacgaaataaagaaggtgat 501 Query: 353 ctgctctctctgcaacaaagaacaggatgtgcagaagaactgctccggatgtggggcatg 412 ||| ||||||||| |||||||||||| ||||| ||||||||||| | |||||||| || Sbjct: 502 ctgttctctctgctccaaagaacaggacgtgcaacagaactgctccagctgtggggcctg 561 Query: 413 catggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaacca 472 |||||| || ||||||||| || |||||| ||||| || |||||| |||||||| ||| Sbjct: 562 catgggcaagtacttctgtaaagtatgcaagttcttcgatgatgatgtctcaaagggcca 621 Query: 473 gtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttccactg 532 ||| ||||| || ||||| || || || |||||||| ||| |||| || || |||||||| Sbjct: 622 gtaccactgtgacggatgtggaatatgtagaactggcggcgtggagaactttttccactg 681 Query: 533 cgaaaaatgcgggtgttgctacagcaatgttttgaagga 571 || ||||| |||||||| ||||||||||| |||||||| Sbjct: 682 tgataaatgtgggtgttgttacagcaatgtcttgaagga 720
>ref|XM_476180.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 384 Score = 174 bits (88), Expect = 2e-40 Identities = 106/112 (94%) Strand = Plus / Plus Query: 391 actgctccggatgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 450 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37 actgctctggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 96 Query: 451 acgatgatatctcaaagaaccagtatcactgcgatggatgcggcatctgcag 502 | |||||| |||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 97 atgatgatgtctcaaagaaccagtatcactgtgatggatgcggcatatgcag 148 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Plus Query: 500 cagaactggtggcatggacaatttcttccactgcgaaaaatgcgg 544 |||||||||||| |||| || ||||| |||||||| |||||||| Sbjct: 236 cagaactggtggtgtggataagttctttcactgcgacaaatgcgg 280
>dbj|AK120297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051O08, full insert sequence Length = 2604 Score = 151 bits (76), Expect = 3e-33 Identities = 196/236 (83%) Strand = Plus / Plus Query: 346 aggtcatctgctctctctgcaacaaagaacaggatgtgcagaagaactgctccggatgtg 405 |||| |||||||||||||||||||||||||||||||| || || | |||||| |||| Sbjct: 1675 aggttatctgctctctctgcaacaaagaacaggatgtacaacaggattgctccaattgtg 1734 Query: 406 gggcatgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaa 465 |||||||| |||| ||||| ||||| | |||||||||||| | ||| || ||| | |||| Sbjct: 1735 gggcatgcttgggtaaatatttctgcgcaaaatgcaacttttatgatgacgatgtatcaa 1794 Query: 466 agaaccagtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttct 525 ||||||| | ||||||||||||||| ||||| |||||||||||||| || || |||| Sbjct: 1795 agaaccaatttcactgcgatggatgtggcatatgcagaactggtggtgcagagaacttct 1854 Query: 526 tccactgcgaaaaatgcgggtgttgctacagcaatgttttgaaggactctcatcat 581 | ||||| || |||||||| || ||||||||| |||| ||||||| || |||||| Sbjct: 1855 ttcactgtgacaaatgcggatgctgctacagctatgtgctgaaggattcccatcat 1910 Score = 83.8 bits (42), Expect = 6e-13 Identities = 126/154 (81%) Strand = Plus / Plus Query: 189 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 248 |||||| |||| |||| |||||||| ||||| |||| |||| ||||||||||||||||| Sbjct: 281 gagcagtacggatgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggc 340 Query: 249 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 308 ||| |||||| ||| |||| ||||||||| |||| ||| | ||| | ||||| | || Sbjct: 341 gagatcttcgattgcaggcactgccacaacgaagcgaaggactcgttggaggtcagcatc 400 Query: 309 ctcgaccggcacgacatcccccgccacgaaatca 342 |||||||||||| ||||| ||||| ||||||| Sbjct: 401 agcgaccggcacgagatccctcgccatgaaatca 434
>gb|AY105408.1| Zea mays PCO132099 mRNA sequence Length = 795 Score = 133 bits (67), Expect = 7e-28 Identities = 178/215 (82%) Strand = Plus / Plus Query: 357 tctctctgcaacaaagaacaggatgtgcagaagaactgctccggatgtggggcatgcatg 416 ||||||||| ||| |||||||| ||||| ||||||||||| | |||||||| |||||| Sbjct: 6 tctctctgctccaaggaacaggacgtgcaacagaactgctccagctgtggggcctgcatg 65 Query: 417 gggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaaccagtat 476 || || ||||||||| || |||||| ||||| || |||||| |||||||| |||||| Sbjct: 66 ggcaagtacttctgtaaagtatgcaagttcttcgatgatgatgtctcaaagggccagtac 125 Query: 477 cactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttccactgcgaa 536 ||||| || ||||| || || || ||||| || ||| |||| || || |||||||| || Sbjct: 126 cactgtgacggatgtggaatatgtagaaccggcggcgtggagaactttttccactgtgat 185 Query: 537 aaatgcgggtgttgctacagcaatgttttgaagga 571 ||||| |||||||||||||||||||| |||||||| Sbjct: 186 aaatgtgggtgttgctacagcaatgtcttgaagga 220
>gb|BT009109.1| Triticum aestivum clone wl1.pk0003.h12:fis, full insert mRNA sequence Length = 1084 Score = 123 bits (62), Expect = 7e-25 Identities = 71/74 (95%) Strand = Plus / Plus Query: 459 atctcaaagaaccagtatcactgcgatggatgcggcatctgcagaactggtggcatggac 518 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 107 atctcaaagaagcagtatcactacgatggatgcggcatctgcagaactggtggcatggac 166 Query: 519 aatttcttccactg 532 || ||||||||||| Sbjct: 167 aacttcttccactg 180
>gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0012L23, complete sequence Length = 121659 Score = 111 bits (56), Expect = 3e-21 Identities = 65/68 (95%) Strand = Plus / Plus Query: 391 actgctccggatgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 450 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5205 actgctctggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 5264 Query: 451 acgatgat 458 | |||||| Sbjct: 5265 atgatgat 5272 Score = 69.9 bits (35), Expect = 9e-09 Identities = 41/43 (95%) Strand = Plus / Plus Query: 460 tctcaaagaaccagtatcactgcgatggatgcggcatctgcag 502 |||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 5382 tctcaaagaaccagtatcactgtgatggatgcggcatatgcag 5424 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Plus Query: 500 cagaactggtggcatggacaatttcttccactgcgaaaaatgcgg 544 |||||||||||| |||| || ||||| |||||||| |||||||| Sbjct: 5512 cagaactggtggtgtggataagttctttcactgcgacaaatgcgg 5556
>gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1076_H08, complete sequence Length = 148348 Score = 111 bits (56), Expect = 3e-21 Identities = 65/68 (95%) Strand = Plus / Plus Query: 391 actgctccggatgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 450 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 100040 actgctctggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 100099 Query: 451 acgatgat 458 | |||||| Sbjct: 100100 atgatgat 100107 Score = 69.9 bits (35), Expect = 9e-09 Identities = 41/43 (95%) Strand = Plus / Plus Query: 460 tctcaaagaaccagtatcactgcgatggatgcggcatctgcag 502 |||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 100217 tctcaaagaaccagtatcactgtgatggatgcggcatatgcag 100259 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Plus Query: 500 cagaactggtggcatggacaatttcttccactgcgaaaaatgcgg 544 |||||||||||| |||| || ||||| |||||||| |||||||| Sbjct: 100347 cagaactggtggtgtggataagttctttcactgcgacaaatgcgg 100391
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 111 bits (56), Expect = 3e-21 Identities = 65/68 (95%) Strand = Plus / Plus Query: 391 actgctccggatgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 450 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7145191 actgctctggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 7145250 Query: 451 acgatgat 458 | |||||| Sbjct: 7145251 atgatgat 7145258 Score = 69.9 bits (35), Expect = 9e-09 Identities = 41/43 (95%) Strand = Plus / Plus Query: 460 tctcaaagaaccagtatcactgcgatggatgcggcatctgcag 502 |||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 7145368 tctcaaagaaccagtatcactgtgatggatgcggcatatgcag 7145410 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Plus Query: 500 cagaactggtggcatggacaatttcttccactgcgaaaaatgcgg 544 |||||||||||| |||| || ||||| |||||||| |||||||| Sbjct: 7145498 cagaactggtggtgtggataagttctttcactgcgacaaatgcgg 7145542
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 103 bits (52), Expect = 6e-19 Identities = 73/80 (91%) Strand = Plus / Minus Query: 199 gctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcg 258 |||||||||||||||||||| | |||||||| ||||||| |||||||||||||| |||| Sbjct: 72889 gctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggcgaggtgttcg 72830 Query: 259 gctgccggcattgccacaac 278 ||||| |||||||||||||| Sbjct: 72829 gctgcaggcattgccacaac 72810 Score = 97.6 bits (49), Expect = 4e-17 Identities = 55/57 (96%) Strand = Plus / Minus Query: 402 tgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgat 458 ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 71509 tgtggggcatgcatggggaaatacttctgcgaaaaatgcaacttctttgatgatgat 71453 Score = 77.8 bits (39), Expect = 4e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 460 tctcaaagaaccagtatcactgcgatggatgcggcatctgcag 502 ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 71324 tctcaaagaaccagtatcactgcgatggatgcggcatatgcag 71282 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 346 aggtcatctgctctctctgcaacaaagaacaggatgt 382 |||| ||||||||||||||| |||||||||||||||| Sbjct: 71687 aggttatctgctctctctgcgacaaagaacaggatgt 71651 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 312 gaccggcacgacatcccccgccacgaaatca 342 ||||| ||||| ||||||||||||||||||| Sbjct: 72636 gaccgtcacgagatcccccgccacgaaatca 72606 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Minus Query: 543 gggtgttgctacagcaatgttttgaaggactctcatca 580 |||||||||||||| ||||| |||| ||| |||||||| Sbjct: 71025 gggtgttgctacagtaatgtcttgagggattctcatca 70988 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Minus Query: 500 cagaactggtggcatggacaatttcttccactgcgaaaaatgcgg 544 |||||||||||| |||| || ||||| |||||||| |||||||| Sbjct: 71193 cagaactggtggtgtggataagttctttcactgcgacaaatgcgg 71149
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 103 bits (52), Expect = 6e-19 Identities = 73/80 (91%) Strand = Plus / Minus Query: 199 gctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcg 258 |||||||||||||||||||| | |||||||| ||||||| |||||||||||||| |||| Sbjct: 16194000 gctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggcgaggtgttcg 16193941 Query: 259 gctgccggcattgccacaac 278 ||||| |||||||||||||| Sbjct: 16193940 gctgcaggcattgccacaac 16193921 Score = 97.6 bits (49), Expect = 4e-17 Identities = 55/57 (96%) Strand = Plus / Minus Query: 402 tgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgat 458 ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 16192620 tgtggggcatgcatggggaaatacttctgcgaaaaatgcaacttctttgatgatgat 16192564 Score = 77.8 bits (39), Expect = 4e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 460 tctcaaagaaccagtatcactgcgatggatgcggcatctgcag 502 ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 16192435 tctcaaagaaccagtatcactgcgatggatgcggcatatgcag 16192393 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 346 aggtcatctgctctctctgcaacaaagaacaggatgt 382 |||| ||||||||||||||| |||||||||||||||| Sbjct: 16192798 aggttatctgctctctctgcgacaaagaacaggatgt 16192762 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 312 gaccggcacgacatcccccgccacgaaatca 342 ||||| ||||| ||||||||||||||||||| Sbjct: 16193747 gaccgtcacgagatcccccgccacgaaatca 16193717 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Minus Query: 543 gggtgttgctacagcaatgttttgaaggactctcatca 580 |||||||||||||| ||||| |||| ||| |||||||| Sbjct: 16192136 gggtgttgctacagtaatgtcttgagggattctcatca 16192099 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Minus Query: 500 cagaactggtggcatggacaatttcttccactgcgaaaaatgcgg 544 |||||||||||| |||| || ||||| |||||||| |||||||| Sbjct: 16192304 cagaactggtggtgtggataagttctttcactgcgacaaatgcgg 16192260
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 103 bits (52), Expect = 6e-19 Identities = 73/80 (91%) Strand = Plus / Minus Query: 199 gctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcg 258 |||||||||||||||||||| | |||||||| ||||||| |||||||||||||| |||| Sbjct: 16202241 gctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggcgaggtgttcg 16202182 Query: 259 gctgccggcattgccacaac 278 ||||| |||||||||||||| Sbjct: 16202181 gctgcaggcattgccacaac 16202162 Score = 97.6 bits (49), Expect = 4e-17 Identities = 55/57 (96%) Strand = Plus / Minus Query: 402 tgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgat 458 ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 16200861 tgtggggcatgcatggggaaatacttctgcgaaaaatgcaacttctttgatgatgat 16200805 Score = 77.8 bits (39), Expect = 4e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 460 tctcaaagaaccagtatcactgcgatggatgcggcatctgcag 502 ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 16200676 tctcaaagaaccagtatcactgcgatggatgcggcatatgcag 16200634 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 346 aggtcatctgctctctctgcaacaaagaacaggatgt 382 |||| ||||||||||||||| |||||||||||||||| Sbjct: 16201039 aggttatctgctctctctgcgacaaagaacaggatgt 16201003 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 312 gaccggcacgacatcccccgccacgaaatca 342 ||||| ||||| ||||||||||||||||||| Sbjct: 16201988 gaccgtcacgagatcccccgccacgaaatca 16201958 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Minus Query: 543 gggtgttgctacagcaatgttttgaaggactctcatca 580 |||||||||||||| ||||| |||| ||| |||||||| Sbjct: 16200377 gggtgttgctacagtaatgtcttgagggattctcatca 16200340 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Minus Query: 500 cagaactggtggcatggacaatttcttccactgcgaaaaatgcgg 544 |||||||||||| |||| || ||||| |||||||| |||||||| Sbjct: 16200545 cagaactggtggtgtggataagttctttcactgcgacaaatgcgg 16200501
>ref|XM_470211.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1050 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 351 atctgctctctctgcaacaaagaacaggatgtgcagaagaactgctccggatgtggggca 410 |||||||||||||||||||||||||||||||| || || | |||||| ||||||||| Sbjct: 336 atctgctctctctgcaacaaagaacaggatgtacaacaggattgctccaattgtggggca 395 Query: 411 tgcatggggaaatacttctgtgaaaaatgcaactt 445 ||| |||| ||||| ||||| | |||||||||||| Sbjct: 396 tgcttgggtaaatatttctgcgcaaaatgcaactt 430
>dbj|AK104287.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-D07, full insert sequence Length = 1252 Score = 83.8 bits (42), Expect = 6e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 193 agcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgagg 252 ||||||| ||||||||||||| |||||| |||| ||| |||||||||||||||||||| Sbjct: 190 agcacgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgagg 249 Query: 253 tcttcggctgccggcattgccacaac 278 | |||| ||||| |||||||||||| Sbjct: 250 tgttcgcttgccgccattgccacaac 275
>dbj|AK104170.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F09, full insert sequence Length = 1203 Score = 83.8 bits (42), Expect = 6e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 193 agcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgagg 252 ||||||| ||||||||||||| |||||| |||| ||| |||||||||||||||||||| Sbjct: 193 agcacgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgagg 252 Query: 253 tcttcggctgccggcattgccacaac 278 | |||| ||||| |||||||||||| Sbjct: 253 tgttcgcttgccgccattgccacaac 278
>dbj|AK069502.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020D18, full insert sequence Length = 1306 Score = 83.8 bits (42), Expect = 6e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 193 agcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgagg 252 ||||||| ||||||||||||| |||||| |||| ||| |||||||||||||||||||| Sbjct: 212 agcacgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgagg 271 Query: 253 tcttcggctgccggcattgccacaac 278 | |||| ||||| |||||||||||| Sbjct: 272 tgttcgcttgccgccattgccacaac 297
>dbj|AK059316.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-H03, full insert sequence Length = 1334 Score = 83.8 bits (42), Expect = 6e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 193 agcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgagg 252 ||||||| ||||||||||||| |||||| |||| ||| |||||||||||||||||||| Sbjct: 190 agcacgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgagg 249 Query: 253 tcttcggctgccggcattgccacaac 278 | |||| ||||| |||||||||||| Sbjct: 250 tgttcgcttgccgccattgccacaac 275
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 201 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260 ||||||||||||| |||||| |||| ||| ||||||||||||||||||||| |||| Sbjct: 21490548 tgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgaggtgttcgct 21490607 Query: 261 tgccggcattgccacaac 278 ||||| |||||||||||| Sbjct: 21490608 tgccgccattgccacaac 21490625
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 201 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260 ||||||||||||| |||||| |||| ||| ||||||||||||||||||||| |||| Sbjct: 21418869 tgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgaggtgttcgct 21418928 Query: 261 tgccggcattgccacaac 278 ||||| |||||||||||| Sbjct: 21418929 tgccgccattgccacaac 21418946
>emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 158019 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Minus Query: 201 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260 ||||||||||||| |||||| |||| ||| ||||||||||||||||||||| |||| Sbjct: 155341 tgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgaggtgttcgct 155282 Query: 261 tgccggcattgccacaac 278 ||||| |||||||||||| Sbjct: 155281 tgccgccattgccacaac 155264
>ref|NM_191787.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 900 Score = 69.9 bits (35), Expect = 9e-09 Identities = 110/135 (81%) Strand = Plus / Plus Query: 410 atgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaa 469 |||||||||||| |||||||||||| ||||| ||||||| |||||| | ||||| | Sbjct: 381 atgcatggggaagtacttctgtgaagtgtgcaagctctttgatgatgatgtttcaaaaca 440 Query: 470 ccagtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttcca 529 || ||||| ||| |||| || || || ||||||| |||||||| ||| |||||||| || Sbjct: 441 gcaatatcattgcaatggttgtggaatatgcagaattggtggcaaggagaatttctttca 500 Query: 530 ctgcgaaaaatgcgg 544 |||| ||||||||| Sbjct: 501 ctgctcaaaatgcgg 515
>gb|AY574990.1| Oryza sativa (japonica cultivar-group) zinc finger protein (Tranpr) mRNA, complete cds Length = 1393 Score = 69.9 bits (35), Expect = 9e-09 Identities = 110/135 (81%) Strand = Plus / Plus Query: 410 atgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaa 469 |||||||||||| |||||||||||| ||||| ||||||| |||||| | ||||| | Sbjct: 437 atgcatggggaagtacttctgtgaagtgtgcaagctctttgatgatgatgtttcaaaaca 496 Query: 470 ccagtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttcca 529 || ||||| ||| |||| || || || ||||||| |||||||| ||| |||||||| || Sbjct: 497 gcaatatcattgcaatggttgtggaatatgcagaattggtggcaaggagaatttctttca 556 Query: 530 ctgcgaaaaatgcgg 544 |||| ||||||||| Sbjct: 557 ctgctcaaaatgcgg 571
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 69.9 bits (35), Expect = 9e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 201 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260 |||| |||||||| ||||| |||| |||| |||||||||||||||||||| |||||| Sbjct: 2531063 tgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggcgagatcttcgat 2531122 Query: 261 tgccggcattgccacaaccaagc 283 ||| |||| ||||||||| |||| Sbjct: 2531123 tgcaggcactgccacaacgaagc 2531145 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 205 agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 264 |||| |||| ||||||||||||||| |||||||| |||||| ||| |||||| ||||| Sbjct: 13072459 agcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccactgcc 13072400 Query: 265 ggcattgccacaac 278 | |||||||||||| Sbjct: 13072399 gccattgccacaac 13072386 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 346 aggtcatctgctctctctgcaacaaagaacaggatgt 382 |||| |||||||||||||||||||||||||||||||| Sbjct: 2532540 aggttatctgctctctctgcaacaaagaacaggatgt 2532576 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 462 tcaaagaaccagtatcactgcgatggatgcggcatctgcag 502 ||||||||||| | ||||||||||||||| ||||| ||||| Sbjct: 2532908 tcaaagaaccaatttcactgcgatggatgtggcatatgcag 2532948 Score = 48.1 bits (24), Expect = 0.032 Identities = 39/44 (88%) Strand = Plus / Plus Query: 402 tgtggggcatgcatggggaaatacttctgtgaaaaatgcaactt 445 |||||||||||| |||| ||||| ||||| | |||||||||||| Sbjct: 2532724 tgtggggcatgcttgggtaaatatttctgcgcaaaatgcaactt 2532767 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 ttcttccactgcgaaaaatg 541 |||||||||||||||||||| Sbjct: 13071691 ttcttccactgcgaaaaatg 13071672 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 311 cgaccggcacgacatcccccgccacgaaatca 342 |||||||||||| ||||| ||||| ||||||| Sbjct: 2531267 cgaccggcacgagatccctcgccatgaaatca 2531298
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0067N01, from chromosome 3, complete sequence Length = 159636 Score = 69.9 bits (35), Expect = 9e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 201 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260 |||| |||||||| ||||| |||| |||| |||||||||||||||||||| |||||| Sbjct: 139031 tgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggcgagatcttcgat 138972 Query: 261 tgccggcattgccacaaccaagc 283 ||| |||| ||||||||| |||| Sbjct: 138971 tgcaggcactgccacaacgaagc 138949 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 346 aggtcatctgctctctctgcaacaaagaacaggatgt 382 |||| |||||||||||||||||||||||||||||||| Sbjct: 137554 aggttatctgctctctctgcaacaaagaacaggatgt 137518 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Minus Query: 462 tcaaagaaccagtatcactgcgatggatgcggcatctgcag 502 ||||||||||| | ||||||||||||||| ||||| ||||| Sbjct: 137186 tcaaagaaccaatttcactgcgatggatgtggcatatgcag 137146 Score = 48.1 bits (24), Expect = 0.032 Identities = 39/44 (88%) Strand = Plus / Minus Query: 402 tgtggggcatgcatggggaaatacttctgtgaaaaatgcaactt 445 |||||||||||| |||| ||||| ||||| | |||||||||||| Sbjct: 137370 tgtggggcatgcttgggtaaatatttctgcgcaaaatgcaactt 137327 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 311 cgaccggcacgacatcccccgccacgaaatca 342 |||||||||||| ||||| ||||| ||||||| Sbjct: 138827 cgaccggcacgagatccctcgccatgaaatca 138796
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 69.9 bits (35), Expect = 9e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 201 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260 |||| |||||||| ||||| |||| |||| |||||||||||||||||||| |||||| Sbjct: 2531173 tgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggcgagatcttcgat 2531232 Query: 261 tgccggcattgccacaaccaagc 283 ||| |||| ||||||||| |||| Sbjct: 2531233 tgcaggcactgccacaacgaagc 2531255 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 205 agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 264 |||| |||| ||||||||||||||| |||||||| |||||| ||| |||||| ||||| Sbjct: 13069234 agcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccactgcc 13069175 Query: 265 ggcattgccacaac 278 | |||||||||||| Sbjct: 13069174 gccattgccacaac 13069161 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 346 aggtcatctgctctctctgcaacaaagaacaggatgt 382 |||| |||||||||||||||||||||||||||||||| Sbjct: 2532650 aggttatctgctctctctgcaacaaagaacaggatgt 2532686 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 462 tcaaagaaccagtatcactgcgatggatgcggcatctgcag 502 ||||||||||| | ||||||||||||||| ||||| ||||| Sbjct: 2533018 tcaaagaaccaatttcactgcgatggatgtggcatatgcag 2533058 Score = 48.1 bits (24), Expect = 0.032 Identities = 39/44 (88%) Strand = Plus / Plus Query: 402 tgtggggcatgcatggggaaatacttctgtgaaaaatgcaactt 445 |||||||||||| |||| ||||| ||||| | |||||||||||| Sbjct: 2532834 tgtggggcatgcttgggtaaatatttctgcgcaaaatgcaactt 2532877 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 ttcttccactgcgaaaaatg 541 |||||||||||||||||||| Sbjct: 13068466 ttcttccactgcgaaaaatg 13068447 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 311 cgaccggcacgacatcccccgccacgaaatca 342 |||||||||||| ||||| ||||| ||||||| Sbjct: 2531377 cgaccggcacgagatccctcgccatgaaatca 2531408
>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09, complete sequence Length = 106057 Score = 69.9 bits (35), Expect = 9e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 201 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260 |||| |||||||| ||||| |||| |||| |||||||||||||||||||| |||||| Sbjct: 103559 tgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggcgagatcttcgat 103618 Query: 261 tgccggcattgccacaaccaagc 283 ||| |||| ||||||||| |||| Sbjct: 103619 tgcaggcactgccacaacgaagc 103641 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 346 aggtcatctgctctctctgcaacaaagaacaggatgt 382 |||| |||||||||||||||||||||||||||||||| Sbjct: 105036 aggttatctgctctctctgcaacaaagaacaggatgt 105072 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 462 tcaaagaaccagtatcactgcgatggatgcggcatctgcag 502 ||||||||||| | ||||||||||||||| ||||| ||||| Sbjct: 105404 tcaaagaaccaatttcactgcgatggatgtggcatatgcag 105444 Score = 48.1 bits (24), Expect = 0.032 Identities = 39/44 (88%) Strand = Plus / Plus Query: 402 tgtggggcatgcatggggaaatacttctgtgaaaaatgcaactt 445 |||||||||||| |||| ||||| ||||| | |||||||||||| Sbjct: 105220 tgtggggcatgcttgggtaaatatttctgcgcaaaatgcaactt 105263 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 311 cgaccggcacgacatcccccgccacgaaatca 342 |||||||||||| ||||| ||||| ||||||| Sbjct: 103763 cgaccggcacgagatccctcgccatgaaatca 103794
>dbj|AK068005.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130E06, full insert sequence Length = 1843 Score = 69.9 bits (35), Expect = 9e-09 Identities = 110/135 (81%) Strand = Plus / Plus Query: 410 atgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaa 469 |||||||||||| |||||||||||| ||||| ||||||| |||||| | ||||| | Sbjct: 744 atgcatggggaagtacttctgtgaagtgtgcaagctctttgatgatgatgtttcaaaaca 803 Query: 470 ccagtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttcca 529 || ||||| ||| |||| || || || ||||||| |||||||| ||| |||||||| || Sbjct: 804 gcaatatcattgcaatggttgtggaatatgcagaattggtggcaaggagaatttctttca 863 Query: 530 ctgcgaaaaatgcgg 544 |||| ||||||||| Sbjct: 864 ctgctcaaaatgcgg 878
>dbj|AK062155.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-H12, full insert sequence Length = 1692 Score = 69.9 bits (35), Expect = 9e-09 Identities = 110/135 (81%) Strand = Plus / Plus Query: 410 atgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaa 469 |||||||||||| |||||||||||| ||||| ||||||| |||||| | ||||| | Sbjct: 627 atgcatggggaagtacttctgtgaagtgtgcaagctctttgatgatgatgtttcaaaaca 686 Query: 470 ccagtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttcca 529 || ||||| ||| |||| || || || ||||||| |||||||| ||| |||||||| || Sbjct: 687 gcaatatcattgcaatggttgtggaatatgcagaattggtggcaaggagaatttctttca 746 Query: 530 ctgcgaaaaatgcgg 544 |||| ||||||||| Sbjct: 747 ctgctcaaaatgcgg 761
>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11, complete sequence Length = 176637 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 205 agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 264 |||| |||| ||||||||||||||| |||||||| |||||| ||| |||||| ||||| Sbjct: 150157 agcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccactgcc 150098 Query: 265 ggcattgccacaac 278 | |||||||||||| Sbjct: 150097 gccattgccacaac 150084 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 ttcttccactgcgaaaaatg 541 |||||||||||||||||||| Sbjct: 149389 ttcttccactgcgaaaaatg 149370
>dbj|AK059950.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-B01, full insert sequence Length = 1059 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 205 agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 264 |||| |||| ||||||||||||||| |||||||| |||||| ||| |||||| ||||| Sbjct: 101 agcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccactgcc 160 Query: 265 ggcattgccacaac 278 | |||||||||||| Sbjct: 161 gccattgccacaac 174 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 489 tgcggcatctgcagaactggtggcatggacaatttcttccactgcgaaaaatg 541 ||||||||||||||| ||| || | ||| || |||||||||||||||||||| Sbjct: 364 tgcggcatctgcagagttggagggaaggataacttcttccactgcgaaaaatg 416
>gb|AY365035.1| Zea mays pollen germination-related protein-like mRNA sequence Length = 1106 Score = 63.9 bits (32), Expect = 5e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 351 atctgctctctctgcaacaaagaacaggatgt 382 |||||||||||||||||||||||||||||||| Sbjct: 13 atctgctctctctgcaacaaagaacaggatgt 44 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 465 aagaaccagtatcactgcgatggatgcggcatctgcagaactggtggc 512 |||||||| | |||||||||||| |||||||| ||||| ||||||||| Sbjct: 280 aagaaccaatttcactgcgatgggtgcggcatatgcaggactggtggc 327 Score = 40.1 bits (20), Expect = 7.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 420 aaatacttctgtgaaaaatgcaacttctttgacgatgata 459 ||||||||||| | |||||||||||||| ||||| |||| Sbjct: 179 aaatacttctgcgcgaaatgcaacttcttcgacgacgata 218
>dbj|AK073680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033054M17, full insert sequence Length = 1232 Score = 60.0 bits (30), Expect = 9e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 205 agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 264 |||| |||| ||||||||||| ||| |||||||| |||||| ||| |||||| ||||| Sbjct: 154 agcactacaggaggaggtgcacgatccgggcgccgtgctgcaacgacgtcttccactgcc 213 Query: 265 ggcattgccacaac 278 | |||||||||||| Sbjct: 214 gccattgccacaac 227 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Plus Query: 489 tgcggcatctgcagaactggtggcatggacaatttcttccactgcgaaaaatg 541 ||||||||||||| | ||| || | ||| || |||||||||||||||||||| Sbjct: 417 tgcggcatctgcatagttggagggaaggataacttcttccactgcgaaaaatg 469
>gb|BC087404.1| Xenopus laevis hypothetical LOC496013, mRNA (cDNA clone MGC:99190 IMAGE:7207617), complete cds Length = 1181 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 465 aagaaccagtatcactgcgatggatgcggcatctgcag 502 ||||| ||||||||||| |||||||||||||| ||||| Sbjct: 473 aagaagcagtatcactgtgatggatgcggcatatgcag 510
>emb|CR859115.1| Pongo pygmaeus mRNA; cDNA DKFZp469L0620 (from clone DKFZp469L0620) Length = 3715 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 502 gaactggtggcatggacaatttctt 526 ||||||||||||||||||||||||| Sbjct: 2036 gaactggtggcatggacaatttctt 2012
>dbj|AK070809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072L02, full insert sequence Length = 2362 Score = 46.1 bits (23), Expect = 0.13 Identities = 83/103 (80%) Strand = Plus / Plus Query: 410 atgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaa 469 |||||||||||| |||||||||||| ||||| ||||||| |||||| | ||||| | Sbjct: 2251 atgcatggggaagtacttctgtgaagtgtgcaagctctttgatgatgatgtttcaaaaca 2310 Query: 470 ccagtatcactgcgatggatgcggcatctgcagaactggtggc 512 || ||||| ||| |||| || || || ||||||| ||||||| Sbjct: 2311 gcaatatcattgcaatggttgtggaatatgcagaattggtggc 2353
>gb|BT014163.1| Lycopersicon esculentum clone 133283F, mRNA sequence Length = 1881 Score = 44.1 bits (22), Expect = 0.51 Identities = 97/122 (79%) Strand = Plus / Plus Query: 411 tgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaac 470 |||||||||| ||| |||||||||| || || | ||||| |||||||| || || | Sbjct: 894 tgcatggggagatatttctgtgaaacgtgtaagctatttgatgatgatatatccaaaaga 953 Query: 471 cagtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttccac 530 |||||||||||| ||| || || || ||||| | |||||| ||||| || ||||||||| Sbjct: 954 cagtatcactgcagtggttgtgggatatgcaggattggtgggatggagaacttcttccac 1013 Query: 531 tg 532 || Sbjct: 1014 tg 1015
>emb|AL357315.14| Human DNA sequence from clone RP11-809N15 on chromosome 6 Contains a putative novel gene and a novel gene. Contains a CpG island, complete sequence Length = 121129 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 420 aaatacttctgtgaaaaatgca 441 |||||||||||||||||||||| Sbjct: 8042 aaatacttctgtgaaaaatgca 8063
>ref|XM_320050.2| Anopheles gambiae str. PEST ENSANGP00000012255 (ENSANGG00000009766), partial mRNA Length = 759 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Plus Query: 471 cagtatcactgcgatggatgcggcatctgc 500 ||||||||||| ||||| |||||||||||| Sbjct: 250 cagtatcactgtgatgggtgcggcatctgc 279
>gb|AY104238.1| Zea mays PCO120536 mRNA sequence Length = 1630 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 411 tgcatggggaaatacttctgtg 432 |||||||||||||||||||||| Sbjct: 1584 tgcatggggaaatacttctgtg 1605
>gb|AC134569.4| Mus musculus BAC clone RP24-240H21 from chromosome 16, complete sequence Length = 168794 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 acccccgcctccttcctctct 118 ||||||||||||||||||||| Sbjct: 110450 acccccgcctccttcctctct 110430
>ref|NM_170742.1| Homo sapiens potassium inwardly-rectifying channel, subfamily J, member 16 (KCNJ16), transcript variant 3, mRNA Length = 4025 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 506 tggtggcatggacaatttctt 526 ||||||||||||||||||||| Sbjct: 2338 tggtggcatggacaatttctt 2318
>ref|NM_170741.1| Homo sapiens potassium inwardly-rectifying channel, subfamily J, member 16 (KCNJ16), transcript variant 2, mRNA Length = 3926 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 506 tggtggcatggacaatttctt 526 ||||||||||||||||||||| Sbjct: 2250 tggtggcatggacaatttctt 2230
>ref|NM_018658.1| Homo sapiens potassium inwardly-rectifying channel, subfamily J, member 16 (KCNJ16), transcript variant 1, mRNA Length = 4021 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 506 tggtggcatggacaatttctt 526 ||||||||||||||||||||| Sbjct: 2331 tggtggcatggacaatttctt 2311
>emb|AL157786.13| Human DNA sequence from clone RP11-324O2 on chromosome 10 Contains a guanylate cyclase type protein pseudogene, the 5' end of the FACL5 for long-chain 5 fatty-acid-Coenzyme A ligase, a novel gene, the 3' end of a novel gene and a CpG island, complete sequence Length = 122591 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 399 ggatgtggggcatgcatgggg 419 ||||||||||||||||||||| Sbjct: 69745 ggatgtggggcatgcatgggg 69765
>gb|BC033038.2| Homo sapiens potassium inwardly-rectifying channel, subfamily J, member 16, transcript variant 3, mRNA (cDNA clone MGC:33717 IMAGE:5262150), complete cds Length = 4024 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 506 tggtggcatggacaatttctt 526 ||||||||||||||||||||| Sbjct: 2337 tggtggcatggacaatttctt 2317
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 atgcatggggaaatacttctgtgaa 434 |||||||||||| |||||||||||| Sbjct: 29960755 atgcatggggaagtacttctgtgaa 29960731
>gb|AF153816.1|AF153816 Homo sapiens clone 2 inwardly-rectifying potassium channel Kir5.1 (KCNJ16) mRNA, complete cds Length = 4021 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 506 tggtggcatggacaatttctt 526 ||||||||||||||||||||| Sbjct: 2331 tggtggcatggacaatttctt 2311
>gb|AF153814.1|AF153809S6 Homo sapiens inwardly-rectifying potassium channel Kir5.1 (KCNJ16) gene, exon 5 and complete cds, alternatively spliced Length = 3642 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 506 tggtggcatggacaatttctt 526 ||||||||||||||||||||| Sbjct: 1950 tggtggcatggacaatttctt 1930
>dbj|AP003453.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0480C01 Length = 151100 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 atgcatggggaaatacttctgtgaa 434 |||||||||||| |||||||||||| Sbjct: 105313 atgcatggggaagtacttctgtgaa 105289
>gb|AC005208.1|AC005208 Homo sapiens chromosome 17, clone hRPK.1064_E_11, complete sequence Length = 123211 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 506 tggtggcatggacaatttctt 526 ||||||||||||||||||||| Sbjct: 109128 tggtggcatggacaatttctt 109108
>emb|CR931798.8| Mouse DNA sequence from clone RP23-89A4 on chromosome 4, complete sequence Length = 83980 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 atgtggggcatgcatgggga 420 |||||||||||||||||||| Sbjct: 60783 atgtggggcatgcatgggga 60802
>gb|AC123064.3| Mus musculus BAC clone RP23-220P13 from chromosome 10, complete sequence Length = 186172 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 atgcaacttctttgacgatg 456 |||||||||||||||||||| Sbjct: 36571 atgcaacttctttgacgatg 36590
>gb|AC122847.4| Mus musculus BAC clone RP23-163F2 from 6, complete sequence Length = 193343 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 347 ggtcatctgctctctctgcaacaa 370 |||||| ||||||||||||||||| Sbjct: 87761 ggtcatatgctctctctgcaacaa 87738
>ref|XM_541048.2| PREDICTED: Canis familiaris similar to Galanin receptor type 1 (GAL1-R) (GALR1) (LOC483928), mRNA Length = 1056 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 gacccccgcctccttcctct 116 |||||||||||||||||||| Sbjct: 837 gacccccgcctccttcctct 856
>emb|AL357149.13| Human DNA sequence from clone RP11-352E13 on chromosome 6 Contains the 3' end of the UTRN gene for utrophin (homologous to dystrophin), complete sequence Length = 201399 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cagcctccccattctttctt 33 |||||||||||||||||||| Sbjct: 23521 cagcctccccattctttctt 23502
>emb|AL139328.8| Human DNA sequence from clone RP11-84N7 on chromosome 13 Contains part of the DGKH gene for diacylglycerol kinase eta, complete sequence Length = 148430 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 cagcacagcctccccattct 28 |||||||||||||||||||| Sbjct: 38551 cagcacagcctccccattct 38532
>gb|AC152414.7| Mus musculus BAC clone RP23-358O14 from chromosome 10, complete sequence Length = 230322 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 atgcaacttctttgacgatg 456 |||||||||||||||||||| Sbjct: 170655 atgcaacttctttgacgatg 170674
>gb|AC157351.11| Mus musculus chromosome 5, clone RP23-219K16, complete sequence Length = 196331 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 acccccgcctccttcctctcttcc 121 ||||||||||||||||| |||||| Sbjct: 122125 acccccgcctccttcctttcttcc 122102
>dbj|AK051525.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130054L24 product:unclassifiable, full insert sequence Length = 4271 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 atgtggggcatgcatgggga 420 |||||||||||||||||||| Sbjct: 2143 atgtggggcatgcatgggga 2124 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,551,989 Number of Sequences: 3902068 Number of extensions: 4551989 Number of successful extensions: 118748 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 118288 Number of HSP's gapped (non-prelim): 459 length of query: 581 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 558 effective length of database: 17,143,297,704 effective search space: 9565960118832 effective search space used: 9565960118832 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
