ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart23a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016785.1| Zea mays clone Contig618 mRNA sequence 341 1e-90
2gb|AY105153.1| Zea mays PCO138377 mRNA sequence 341 1e-90
3dbj|AK120755.1| Oryza sativa (japonica cultivar-group) cDNA clon... 293 3e-76
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 212 9e-52
5dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic D... 212 9e-52
6gb|AF457955.1| Zea mays clone cr1.pk0029.c7, mRNA sequence 182 8e-43
7gb|AC158186.2| Selaginella moellendorffii clone JGIASXY-5F17, co... 84 6e-13
8dbj|D38132.1|CUCGCS Cucurbita cv. Kurokawa Amakuri mRNA for glyo... 62 2e-06
9emb|AJ009903.1|ZMA9903 Zostera marina microsatellite DNA, clone ... 56 1e-04
10gb|AC137529.3| Carollia perspicillata clone 6M17, complete sequence 46 0.12
11gb|AC139728.3| Carollia perspicillata clone 29G20, complete sequ... 46 0.12
12gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold 46 0.12
13ref|NM_100060.2| Arabidopsis thaliana unknown protein AT1G01770 ... 42 1.9
14gb|AC136971.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
15gb|AC146524.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
16emb|CR318646.27| Zebrafish DNA sequence from clone DKEY-83F18 in... 42 1.9
17gb|AY059790.1| Arabidopsis thaliana At1g01770 mRNA sequence 42 1.9
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
19gb|AC009273.2|T1N6 Sequence of BAC T1N6 from Arabidopsis thalian... 42 1.9
20emb|BX000705.13| Zebrafish DNA sequence from clone DKEY-76D18, c... 42 1.9
21gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 42 1.9
22gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
23gb|AC167126.6| Mus musculus chromosome 1, clone RP24-104I19, com... 40 7.5
24ref|NM_197136.1| Oryza sativa (japonica cultivar-group) putative... 40 7.5
25ref|NM_196376.1| Oryza sativa (japonica cultivar-group) putative... 40 7.5
26gb|AC167168.5| Mus musculus chromosome 1, clone RP23-100P14, com... 40 7.5
27gb|AY023149.1| Oryza sativa microsatellite MRG5474 containing (G... 40 7.5
28gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
29gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
30gb|AC135598.4| Oryza sativa chromosome 3 BAC OSJNBb0021K20 genom... 40 7.5
31gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.5
32emb|Z78413.1|CET01C3 Caenorhabditis elegans Cosmid T01C3, comple... 40 7.5
33emb|CT009528.9| M.truncatula DNA sequence from clone MTH2-168J23... 40 7.5
34gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 geno... 40 7.5
35emb|BX936422.17| Zebrafish DNA sequence from clone DKEY-10I19 in... 40 7.5
36gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 7.5
37gb|DP000059.1| Carollia perspicillata target 117 genomic scaffold 40 7.5
38gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold 40 7.5
39gb|CP000235.1| Anaplasma phagocytophilum HZ, complete genome 40 7.5
40ref|NM_074289.3| Caenorhabditis elegans Ribosomal Protein, Small... 40 7.5
41dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
42dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
43dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
44gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.5
45dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 7.5
46dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.5
47dbj|AP003413.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
48gb|U17352.1|TAU17352 Thermus aquaticus L-glutamine:D-fructose-6-... 40 7.5
49gb|AC144773.3| Mus musculus BAC clone RP24-176P22 from 1, comple... 40 7.5
50emb|BX005113.4| Zebrafish DNA sequence from clone CH211-203B20, ... 40 7.5
51gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
52gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 7.5
53gb|AC169668.1| Mus musculus chromosome 1, clone RP23-317J12, com... 40 7.5 
>gb|BT016785.1| Zea mays clone Contig618 mRNA sequence
          Length = 1899

 Score =  341 bits (172), Expect = 1e-90
 Identities = 304/348 (87%)
 Strand = Plus / Plus

                                                                       
Query: 204 ctggagaggtcgccggtctcggccgcttccccggggacccgcgccggcgtgctcgccgtg 263
           ||||||||||||||||| || ||  |  | || ||| |||||||||||| ||| ||||||
Sbjct: 148 ctggagaggtcgccggtatccgcgccggcgcccgggccccgcgccggcgcgcttgccgtg 207

                                                                       
Query: 264 gtggactcgaggaccgggaaaaggtacgaggtcaaggtttcggaggacggcaccgtccgc 323
           ||||||  ||||||||||||  || ||||||||||||| || || ||||||||||| |||
Sbjct: 208 gtggacgggaggaccgggaagcggcacgaggtcaaggtctccgaagacggcaccgtgcgc 267

                                                                       
Query: 324 gccacggacttcaagaagattaccactggaaaagatgacaatggtcttaagacttacgat 383
           ||||| |||||||||||||||||||||||||| || ||||| |||||||||| ||| |||
Sbjct: 268 gccaccgacttcaagaagattaccactggaaaggacgacaagggtcttaagatttatgat 327

                                                                       
Query: 384 cctggttatctcaacactgcccctgtgcgttcttccatctgctacattgatggggatgag 443
           |||||||| || |||||||||||||| || || |||||||||||||| ||||| ||||||
Sbjct: 328 cctggttaccttaacactgcccctgttcgctcgtccatctgctacatcgatggagatgag 387

                                                                       
Query: 444 ggaattcttcgctacaggggttatcccattgaggaggtggctgaaagcagctcatttgtt 503
           ||||| |||||||| ||||||||||| || || ||  |||||||||||||||| ||||||
Sbjct: 388 ggaatccttcgctataggggttatccaatcgaagaattggctgaaagcagctcgtttgtt 447

                                                           
Query: 504 gaggtcgcctacctcttaatgtatgggaatttgcctactcagagtcaa 551
           ||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 448 gaggtggcctaccttttaatgtatgggaacttgcctactcagagtcaa 495



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                    
Query: 106 ccatggatcgcaccgatcccgcgcggggccgcctcgcggtgctctcttcccacctcc 162
           ||||||||||| |||| ||||||||||||||||| || |||||||| ||||||||||
Sbjct: 62  ccatggatcgcgccgaccccgcgcggggccgccttgccgtgctctcctcccacctcc 118
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>gb|AY105153.1| Zea mays PCO138377 mRNA sequence
          Length = 2018

 Score =  341 bits (172), Expect = 1e-90
 Identities = 304/348 (87%)
 Strand = Plus / Plus

                                                                       
Query: 204 ctggagaggtcgccggtctcggccgcttccccggggacccgcgccggcgtgctcgccgtg 263
           ||||||||||||||||| || ||  |  | || ||| |||||||||||| ||| ||||||
Sbjct: 215 ctggagaggtcgccggtatccgcgccggcgcccgggccccgcgccggcgcgcttgccgtg 274

                                                                       
Query: 264 gtggactcgaggaccgggaaaaggtacgaggtcaaggtttcggaggacggcaccgtccgc 323
           ||||||  ||||||||||||  || ||||||||||||| || || ||||||||||| |||
Sbjct: 275 gtggacgggaggaccgggaagcggcacgaggtcaaggtctccgaagacggcaccgtgcgc 334

                                                                       
Query: 324 gccacggacttcaagaagattaccactggaaaagatgacaatggtcttaagacttacgat 383
           ||||| |||||||||||||||||||||||||| || ||||| |||||||||| ||| |||
Sbjct: 335 gccaccgacttcaagaagattaccactggaaaggacgacaagggtcttaagatttatgat 394

                                                                       
Query: 384 cctggttatctcaacactgcccctgtgcgttcttccatctgctacattgatggggatgag 443
           |||||||| || |||||||||||||| || || |||||||||||||| ||||| ||||||
Sbjct: 395 cctggttaccttaacactgcccctgttcgctcgtccatctgctacatcgatggagatgag 454

                                                                       
Query: 444 ggaattcttcgctacaggggttatcccattgaggaggtggctgaaagcagctcatttgtt 503
           ||||| |||||||| ||||||||||| || || ||  |||||||||||||||| ||||||
Sbjct: 455 ggaatccttcgctataggggttatccaatcgaagaattggctgaaagcagctcgtttgtt 514

                                                           
Query: 504 gaggtcgcctacctcttaatgtatgggaatttgcctactcagagtcaa 551
           ||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 515 gaggtggcctaccttttaatgtatgggaacttgcctactcagagtcaa 562



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                    
Query: 106 ccatggatcgcaccgatcccgcgcggggccgcctcgcggtgctctcttcccacctcc 162
           ||||||||||| |||| ||||||||||||||||| || |||||||| ||||||||||
Sbjct: 129 ccatggatcgcgccgaccccgcgcggggccgccttgccgtgctctcctcccacctcc 185
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>dbj|AK120755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007B06, full
           insert sequence
          Length = 1927

 Score =  293 bits (148), Expect = 3e-76
 Identities = 244/276 (88%)
 Strand = Plus / Plus

                                                                       
Query: 272 gaggaccgggaaaaggtacgaggtcaaggtttcggaggacggcaccgtccgcgccacgga 331
           |||||| ||||| ||||||||||||||||| ||||| || || ||||| |||||||| ||
Sbjct: 263 gaggacggggaagaggtacgaggtcaaggtgtcggacgaggggaccgtgcgcgccaccga 322

                                                                       
Query: 332 cttcaagaagattaccactggaaaagatgacaatggtcttaagacttacgatcctggtta 391
           |||||||||||||||||||||||| || ||||| ||||||||||  || |||||||||||
Sbjct: 323 cttcaagaagattaccactggaaaggacgacaagggtcttaagatctatgatcctggtta 382

                                                                       
Query: 392 tctcaacactgcccctgtgcgttcttccatctgctacattgatggggatgagggaattct 451
           ||||||||| ||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct: 383 tctcaacacagccccagttcgctcatccatctgctacattgatggggatgagggaattct 442

                                                                       
Query: 452 tcgctacaggggttatcccattgaggaggtggctgaaagcagctcatttgttgaggtcgc 511
           ||| |||||||| || || ||||| ||| |||||||||||||||||||||||||||| ||
Sbjct: 443 tcgttacaggggatacccaattgaagagttggctgaaagcagctcatttgttgaggtggc 502

                                               
Query: 512 ctacctcttaatgtatgggaatttgcctactcagag 547
           ||||||| | ||||| || | ||||||||| |||||
Sbjct: 503 ctacctcctgatgtacggaagtttgcctacccagag 538
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  212 bits (107), Expect = 9e-52
 Identities = 161/179 (89%)
 Strand = Plus / Plus

                                                                           
Query: 340     agattaccactggaaaagatgacaatggtcttaagacttacgatcctggttatctcaaca 399
               |||||||||||||||| || ||||| ||||||||||  || |||||||||||||||||||
Sbjct: 7491335 agattaccactggaaaggacgacaagggtcttaagatctatgatcctggttatctcaaca 7491394

                                                                           
Query: 400     ctgcccctgtgcgttcttccatctgctacattgatggggatgagggaattcttcgctaca 459
               | ||||| || || || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 7491395 cagccccagttcgctcatccatctgctacattgatggggatgagggaattcttcgttaca 7491454

                                                                          
Query: 460     ggggttatcccattgaggaggtggctgaaagcagctcatttgttgaggtcgcctacctc 518
               |||| || || ||||| ||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 7491455 ggggatacccaattgaagagttggctgaaagcagctcatttgttgaggtggcctacctc 7491513



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                           
Query: 272     gaggaccgggaaaaggtacgaggtcaaggtttcggaggacggcaccgtccgcgccacgga 331
               |||||| ||||| ||||||||||||||||| ||||| || || ||||| |||||||| ||
Sbjct: 7490590 gaggacggggaagaggtacgaggtcaaggtgtcggacgaggggaccgtgcgcgccaccga 7490649

                         
Query: 332     cttcaagaag 341
               ||||||||||
Sbjct: 7490650 cttcaagaag 7490659
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>dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1705_E12
          Length = 191416

 Score =  212 bits (107), Expect = 9e-52
 Identities = 161/179 (89%)
 Strand = Plus / Plus

                                                                         
Query: 340   agattaccactggaaaagatgacaatggtcttaagacttacgatcctggttatctcaaca 399
             |||||||||||||||| || ||||| ||||||||||  || |||||||||||||||||||
Sbjct: 85041 agattaccactggaaaggacgacaagggtcttaagatctatgatcctggttatctcaaca 85100

                                                                         
Query: 400   ctgcccctgtgcgttcttccatctgctacattgatggggatgagggaattcttcgctaca 459
             | ||||| || || || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 85101 cagccccagttcgctcatccatctgctacattgatggggatgagggaattcttcgttaca 85160

                                                                        
Query: 460   ggggttatcccattgaggaggtggctgaaagcagctcatttgttgaggtcgcctacctc 518
             |||| || || ||||| ||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 85161 ggggatacccaattgaagagttggctgaaagcagctcatttgttgaggtggcctacctc 85219



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                         
Query: 272   gaggaccgggaaaaggtacgaggtcaaggtttcggaggacggcaccgtccgcgccacgga 331
             |||||| ||||| ||||||||||||||||| ||||| || || ||||| |||||||| ||
Sbjct: 84296 gaggacggggaagaggtacgaggtcaaggtgtcggacgaggggaccgtgcgcgccaccga 84355

                       
Query: 332   cttcaagaag 341
             ||||||||||
Sbjct: 84356 cttcaagaag 84365
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>gb|AF457955.1| Zea mays clone cr1.pk0029.c7, mRNA sequence
          Length = 525

 Score =  182 bits (92), Expect = 8e-43
 Identities = 140/156 (89%)
 Strand = Plus / Plus

                                                                       
Query: 396 aacactgcccctgtgcgttcttccatctgctacattgatggggatgagggaattcttcgc 455
           |||||||||||||| || || |||||||||||||| ||||| ||||||||||| ||||||
Sbjct: 3   aacactgcccctgttcgctcgtccatctgctacatcgatggagatgagggaatccttcgc 62

                                                                       
Query: 456 tacaggggttatcccattgaggaggtggctgaaagcagctcatttgttgaggtcgcctac 515
           || ||||||||||| || || ||  |||||||||||||||| ||||||||||| ||||||
Sbjct: 63  tataggggttatccaatcgaagaattggctgaaagcagctcgtttgttgaggtggcctac 122

                                               
Query: 516 ctcttaatgtatgggaatttgcctactcagagtcaa 551
           || |||||||||||||| ||||||||||||||||||
Sbjct: 123 cttttaatgtatgggaacttgcctactcagagtcaa 158
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>gb|AC158186.2| Selaginella moellendorffii clone JGIASXY-5F17, complete sequence
          Length = 30844

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                         
Query: 393   ctcaacactgcccctgtgcgttcttccatctgctacattgatggggatgagggaattctt 452
             |||||||| || ||||||||||||||||| |  ||||||||||||||  | || ||||||
Sbjct: 29267 ctcaacacggcgcctgtgcgttcttccatttcttacattgatggggacaaagggattctt 29208

                                       
Query: 453   cgctacaggggttatcccattgagga 478
             ||||||||||| ||||| ||||||||
Sbjct: 29207 cgctacaggggatatccgattgagga 29182
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>dbj|D38132.1|CUCGCS Cucurbita cv. Kurokawa Amakuri mRNA for glyoxysomal citrate
           synthase, complete cds
          Length = 1989

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 136/171 (79%)
 Strand = Plus / Plus

                                                                       
Query: 381 gatcctggttatctcaacactgcccctgtgcgttcttccatctgctacattgatggggat 440
           ||||| || |||||||||||||| || || || || || ||| | || |||||||| || 
Sbjct: 433 gatccaggctatctcaacactgctccagttcggtcgtcgatcagttatattgatggtgac 492

                                                                       
Query: 441 gagggaattcttcgctacaggggttatcccattgaggaggtggctgaaagcagctcattt 500
             |||||||||| | ||||| || || || ||||||||  ||||||| || ||  | | |
Sbjct: 493 ttgggaattcttaggtacagaggctacccgattgaggaattggctgagagtagtacctat 552

                                                              
Query: 501 gttgaggtcgcctacctcttaatgtatgggaatttgcctactcagagtcaa 551
           || || || || |||||||| |||||||||||||||||| |||||||||||
Sbjct: 553 gtggaagttgcatacctcttgatgtatgggaatttgccttctcagagtcaa 603
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>emb|AJ009903.1|ZMA9903 Zostera marina microsatellite DNA, clone ZosmarGA-5
          Length = 277

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 381 gatcctggttatctcaacactgcccctgtgcgttcttccatctgctacattgatgg 436
           |||||||| |||||||||||||| || ||| | ||| | |||||||||||||||||
Sbjct: 57  gatcctggatatctcaacactgctccagtgaggtctactatctgctacattgatgg 2
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>gb|AC137529.3| Carollia perspicillata clone 6M17, complete sequence
          Length = 118381

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 68    tgctctgctcgtctcctccctgc 90
             |||||||||||||||||||||||
Sbjct: 60238 tgctctgctcgtctcctccctgc 60260
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>gb|AC139728.3| Carollia perspicillata clone 29G20, complete sequence
          Length = 125364

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 68    tgctctgctcgtctcctccctgc 90
             |||||||||||||||||||||||
Sbjct: 35784 tgctctgctcgtctcctccctgc 35762
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>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold
          Length = 1501503

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 68     tgctctgctcgtctcctccctgc 90
              |||||||||||||||||||||||
Sbjct: 589126 tgctctgctcgtctcctccctgc 589104



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 68     tgctctgctcgtctcctccctgc 90
              |||||||||||||||||||||||
Sbjct: 507890 tgctctgctcgtctcctccctgc 507912
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>ref|NM_100060.2| Arabidopsis thaliana unknown protein AT1G01770 mRNA, complete cds
          Length = 2362

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 46 cgcttccttcacgtctctctc 66
          |||||||||||||||||||||
Sbjct: 13 cgcttccttcacgtctctctc 33
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>gb|AC136971.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032K12,
              complete sequence
          Length = 166936

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 472    ttgaggaggtggctgaaagca 492
              |||||||||||||||||||||
Sbjct: 162262 ttgaggaggtggctgaaagca 162282
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>gb|AC146524.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0055H15, complete sequence
          Length = 28312

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 472  ttgaggaggtggctgaaagca 492
            |||||||||||||||||||||
Sbjct: 6587 ttgaggaggtggctgaaagca 6607
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>emb|CR318646.27| Zebrafish DNA sequence from clone DKEY-83F18 in linkage group 22,
             complete sequence
          Length = 224271

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 61    tctctcttgctctgctcgtctcctc 85
             ||||||||||||||||| |||||||
Sbjct: 41413 tctctcttgctctgctcctctcctc 41437
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>gb|AY059790.1| Arabidopsis thaliana At1g01770 mRNA sequence
          Length = 3229

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 46 cgcttccttcacgtctctctc 66
          |||||||||||||||||||||
Sbjct: 13 cgcttccttcacgtctctctc 33
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 472     ttgaggaggtggctgaaagca 492
               |||||||||||||||||||||
Sbjct: 7037004 ttgaggaggtggctgaaagca 7037024
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>gb|AC009273.2|T1N6 Sequence of BAC T1N6 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 76175

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 46    cgcttccttcacgtctctctc 66
             |||||||||||||||||||||
Sbjct: 49803 cgcttccttcacgtctctctc 49823
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>emb|BX000705.13| Zebrafish DNA sequence from clone DKEY-76D18, complete sequence
          Length = 255779

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 62     ctctcttgctctgctcgtctcctcc 86
              |||||||||||||||| ||||||||
Sbjct: 167908 ctctcttgctctgctcctctcctcc 167884
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 308     ggacggcaccgtccgcgccac 328
               |||||||||||||||||||||
Sbjct: 1198721 ggacggcaccgtccgcgccac 1198741
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 472     ttgaggaggtggctgaaagca 492
               |||||||||||||||||||||
Sbjct: 7103471 ttgaggaggtggctgaaagca 7103491
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>gb|AC167126.6| Mus musculus chromosome 1, clone RP24-104I19, complete sequence
          Length = 156900

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    cacgtctctctcttgctctg 74
             ||||||||||||||||||||
Sbjct: 34071 cacgtctctctcttgctctg 34090
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>ref|NM_197136.1| Oryza sativa (japonica cultivar-group) putative receptor-like protein
            kinase (OSJNBa0051D19.27), mRNA
          Length = 1956

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 164  cgccgccggcgtggagggcg 183
            ||||||||||||||||||||
Sbjct: 1090 cgccgccggcgtggagggcg 1071
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>ref|NM_196376.1| Oryza sativa (japonica cultivar-group) putative selenium-binding
           protein-like (OSJNBa0050N08.17), mRNA
          Length = 1956

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 cccacctcctcgccgccggc 173
           ||||||||||||||||||||
Sbjct: 92  cccacctcctcgccgccggc 111
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>gb|AC167168.5| Mus musculus chromosome 1, clone RP23-100P14, complete sequence
          Length = 204256

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    cacgtctctctcttgctctg 74
             ||||||||||||||||||||
Sbjct: 16299 cacgtctctctcttgctctg 16280
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>gb|AY023149.1| Oryza sativa microsatellite MRG5474 containing (GCC)X9, closest to
           marker C390, genomic sequence
          Length = 227

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 164 cgccgccggcgtggagggcg 183
           ||||||||||||||||||||
Sbjct: 121 cgccgccggcgtggagggcg 140
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>gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0032H19
              map E30331S, complete sequence
          Length = 164820

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    cgccggcgtgctcgccgtgg 264
              ||||||||||||||||||||
Sbjct: 163401 cgccggcgtgctcgccgtgg 163420
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>gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0050N08, complete sequence
          Length = 144593

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   cccacctcctcgccgccggc 173
             ||||||||||||||||||||
Sbjct: 87327 cccacctcctcgccgccggc 87308
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>gb|AC135598.4| Oryza sativa chromosome 3 BAC OSJNBb0021K20 genomic sequence, complete
              sequence
          Length = 137220

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    cgccggcgtgctcgccgtgg 264
              ||||||||||||||||||||
Sbjct: 122685 cgccggcgtgctcgccgtgg 122666
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 245      cgccggcgtgctcgccgtgg 264
                ||||||||||||||||||||
Sbjct: 17400308 cgccggcgtgctcgccgtgg 17400289
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>emb|Z78413.1|CET01C3 Caenorhabditis elegans Cosmid T01C3, complete sequence
          Length = 23210

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    tctctcttgctctgctcgtc 80
             ||||||||||||||||||||
Sbjct: 13567 tctctcttgctctgctcgtc 13586
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>emb|CT009528.9| M.truncatula DNA sequence from clone MTH2-168J23 on chromosome 3,
             complete sequence
          Length = 129215

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                     
Query: 429   attgatggggatgagggaattcttcgctacaggggttatcccattgaggaggtggc 484
             |||||||| ||||||||||| ||| | || || || || |||||||||||| ||||
Sbjct: 82077 attgatggtgatgagggaatccttagatatagaggataccccattgaggagttggc 82022
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>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete
             sequence
          Length = 131984

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   cgccgccggcgtggagggcg 183
             ||||||||||||||||||||
Sbjct: 29514 cgccgccggcgtggagggcg 29533
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>emb|BX936422.17| Zebrafish DNA sequence from clone DKEY-10I19 in linkage group 14,
             complete sequence
          Length = 260668

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 61    tctctcttgctctgctcgtctcct 84
             |||||| |||||||||||||||||
Sbjct: 17246 tctctcctgctctgctcgtctcct 17269
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    ctcctcgccgccggcgtgga 178
              ||||||||||||||||||||
Sbjct: 855895 ctcctcgccgccggcgtgga 855876
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>gb|DP000059.1| Carollia perspicillata target 117 genomic scaffold
          Length = 359132

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     tgctctgctcgtctcctccc 87
              ||||||||||||||||||||
Sbjct: 238347 tgctctgctcgtctcctccc 238328
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>gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold
          Length = 501879

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     tgctctgctcgtctcctccc 87
              ||||||||||||||||||||
Sbjct: 257158 tgctctgctcgtctcctccc 257177
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>gb|CP000235.1| Anaplasma phagocytophilum HZ, complete genome
          Length = 1471282

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 379   acgatcctggttatctcaac 398
             ||||||||||||||||||||
Sbjct: 31751 acgatcctggttatctcaac 31732
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>ref|NM_074289.3| Caenorhabditis elegans Ribosomal Protein, Small subunit family
           member (rps-16) (rps-16) mRNA, complete cds
          Length = 532

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 61  tctctcttgctctgctcgtc 80
           ||||||||||||||||||||
Sbjct: 371 tctctcttgctctgctcgtc 352
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 164      cgccgccggcgtggagggcg 183
                ||||||||||||||||||||
Sbjct: 18183614 cgccgccggcgtggagggcg 18183595



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 154      cccacctcctcgccgccggc 173
                ||||||||||||||||||||
Sbjct: 12988411 cccacctcctcgccgccggc 12988392
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 245      cgccggcgtgctcgccgtgg 264
                ||||||||||||||||||||
Sbjct: 17393849 cgccggcgtgctcgccgtgg 17393830
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 147      ctctcttcccacctcctcgccgccggcg 174
                |||||||||| || ||||||||||||||
Sbjct: 22078455 ctctcttccccccacctcgccgccggcg 22078482
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 220     tctcggccgcttccccggggacccgcgccggc 251
               |||||||||||||  |||||||| ||||||||
Sbjct: 4436694 tctcggccgcttcatcggggacctgcgccggc 4436663



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     ccggcgtggagggcgcggac 188
               ||||||||||||||||||||
Sbjct: 4286143 ccggcgtggagggcgcggac 4286124



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                               
Query: 168     gccggcgtggagggcgcggaccccgcggcggc 199
               |||||||||| ||||||| |||||||||||||
Sbjct: 1808975 gccggcgtggtgggcgcg-accccgcggcggc 1808945
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 259     ccgtggtggactcgaggacc 278
               ||||||||||||||||||||
Sbjct: 1782925 ccgtggtggactcgaggacc 1782944
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 242     ccgcgccggcgtgctcgccg 261
               ||||||||||||||||||||
Sbjct: 1345074 ccgcgccggcgtgctcgccg 1345093
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>dbj|AP003413.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1151A10
          Length = 124344

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 147   ctctcttcccacctcctcgccgccggcg 174
             |||||||||| || ||||||||||||||
Sbjct: 89968 ctctcttccccccacctcgccgccggcg 89995
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>gb|U17352.1|TAU17352 Thermus aquaticus L-glutamine:D-fructose-6-P amidotransferase (glmS)
            gene, complete cds and s-layer P100 (slp) gene, partial
            cds
          Length = 2560

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 259  ccgtggtggactcgaggacc 278
            ||||||||||||||||||||
Sbjct: 1526 ccgtggtggactcgaggacc 1545
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>gb|AC144773.3| Mus musculus BAC clone RP24-176P22 from 1, complete sequence
          Length = 167510

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 475   aggaggtggctgaaagcagc 494
             ||||||||||||||||||||
Sbjct: 76146 aggaggtggctgaaagcagc 76165
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>emb|BX005113.4| Zebrafish DNA sequence from clone CH211-203B20, complete sequence
          Length = 191785

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 61   tctctcttgctctgctcgtctcct 84
            |||||| |||||||||||||||||
Sbjct: 8477 tctctcctgctctgctcgtctcct 8500
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 164      cgccgccggcgtggagggcg 183
                ||||||||||||||||||||
Sbjct: 18192867 cgccgccggcgtggagggcg 18192848



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 154      cccacctcctcgccgccggc 173
                ||||||||||||||||||||
Sbjct: 12995751 cccacctcctcgccgccggc 12995732
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 259     ccgtggtggactcgaggacc 278
               ||||||||||||||||||||
Sbjct: 1458659 ccgtggtggactcgaggacc 1458678
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>gb|AC169668.1| Mus musculus chromosome 1, clone RP23-317J12, complete sequence
          Length = 224712

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   cacgtctctctcttgctctg 74
            ||||||||||||||||||||
Sbjct: 1435 cacgtctctctcttgctctg 1454


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,166,313
Number of Sequences: 3902068
Number of extensions: 4166313
Number of successful extensions: 96159
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94714
Number of HSP's gapped (non-prelim): 1445
length of query: 552
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 529
effective length of database: 17,143,297,704
effective search space: 9068804485416
effective search space used: 9068804485416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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