ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart22h11 |
|---|---|
| Clone Library Name | barley_pub |
>FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan protein 7 precursor| Length = 254 Score = 55.5 bits (132), Expect = 9e-08 Identities = 28/83 (33%), Positives = 45/83 (54%) Frame = +3 Query: 267 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSL 446 N+T +L AG + F+ + ST QAN ++ G T+F P D+AF + K L++L Sbjct: 46 NLTELLSVAGPFHTFLDYLLSTGVIETFQNQANNTEEGITIFVPKDDAFKAQKNPPLSNL 105 Query: 447 SQQDQVTLVQAHIVPTFYSMESF 515 ++ LV H +P +YS+ F Sbjct: 106 TKDQLKQLVLFHALPHYYSLSEF 128
>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor| (AtAGP8) Length = 420 Score = 43.5 bits (101), Expect = 3e-04 Identities = 28/81 (34%), Positives = 44/81 (54%) Frame = +3 Query: 255 AAAPNVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGT 434 A+ N+T +LEKAG T F L+ S+ L + + G TVFAP+D AF + Sbjct: 185 ASLSNITGLLEKAGCKT-FANLLVSSGV---LKTYESAVEKGLTVFAPSDEAFKAEGVPD 240 Query: 435 LNSLSQQDQVTLVQAHIVPTF 497 L L+Q + V+L++ H + + Sbjct: 241 LTKLTQAEVVSLLEYHALAEY 261
>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor| Length = 422 Score = 42.7 bits (99), Expect = 6e-04 Identities = 27/81 (33%), Positives = 44/81 (54%) Frame = +3 Query: 255 AAAPNVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGT 434 A N+T +LEKAG T F L+ S+ + + + G TVFAP+D AF + Sbjct: 186 AGVSNITGLLEKAGCKT-FANLLVSSGV---IKTFESTVEKGLTVFAPSDEAFKARGVPD 241 Query: 435 LNSLSQQDQVTLVQAHIVPTF 497 L +L+Q + V+L++ H + + Sbjct: 242 LTNLTQAEVVSLLEYHALAEY 262
>Y1483_SYNY3 (P74615) Hypothetical protein sll1483 precursor| Length = 180 Score = 40.0 bits (92), Expect = 0.004 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%) Frame = +3 Query: 255 AAAPNVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGT 434 AA + ++E A F L+A+ + + A + E FTVFAPT++AF +L GT Sbjct: 40 AATDSAMTIVEVAAGNETFSTLVAAVKAADLVEALSAEGP--FTVFAPTNDAFAALPAGT 97 Query: 435 LNSL----SQQDQVTLVQAHIVP 491 + SL ++ V ++ H+VP Sbjct: 98 VESLLLPENKDKLVKILTYHVVP 120
>YH35_SYNP2 (O33752) Hypothetical protein sll1735 homolog| Length = 133 Score = 39.3 bits (90), Expect = 0.006 Identities = 22/48 (45%), Positives = 28/48 (58%) Frame = +3 Query: 309 FIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSLSQ 452 F L+A+ Q + A E D FTVFAP D+AF L PGT+ +L Q Sbjct: 14 FSTLVAAVQAAGLVETLAGEGD--FTVFAPNDDAFAKLPPGTIQTLVQ 59
>STAB2_HUMAN (Q8WWQ8) Stabilin-2 precursor (FEEL-2 protein) (Fasciclin EGF-like| laminin-type EGF-like and link domain-containing scavenger receptor 1) (FAS1 EGF-like and X-link domain-containing adhesion molecule 2) (Hyaluronan receptor for endocytosis) [ Length = 2551 Score = 38.1 bits (87), Expect = 0.014 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 6/71 (8%) Frame = +3 Query: 297 QYTKFIRLMASTQQDTQLNAQANESDTG--FTVFAPTDNAFNSLKPGTLNSL----SQQD 458 +Y+KF L+ ++T L +E G +T+F P + A N++K GTL+ L + Sbjct: 527 RYSKFRSLL----EETNLGHALDEDGVGGPYTIFVPNNEALNNMKDGTLDYLLSPEGSRK 582 Query: 459 QVTLVQAHIVP 491 + LV+ HIVP Sbjct: 583 LLELVRYHIVP 593
>Y1735_SYNY3 (P73392) Hypothetical protein sll1735| Length = 133 Score = 36.6 bits (83), Expect = 0.042 Identities = 17/29 (58%), Positives = 20/29 (68%) Frame = +3 Query: 366 ESDTGFTVFAPTDNAFNSLKPGTLNSLSQ 452 +S FTVFAPTD AF L PGT+ +L Q Sbjct: 31 QSPGPFTVFAPTDTAFAKLPPGTITTLVQ 59
>STAB2_RAT (Q8CFM6) Stabilin-2 precursor (Hyaluronan receptor for endocytosis)| [Contains: 175 kDa stabilin-2 (175 kDa hyaluronan receptor for endocytosis)] (Fragment) Length = 1431 Score = 34.3 bits (77), Expect = 0.21 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Frame = +3 Query: 267 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANES-DTGFTVFAPTDNAFNSLKPGTLNS 443 N+T V G YTKF +L+ QD+ L + +S T TVF PTD A +L P + Sbjct: 607 NLTTVAANHG-YTKFSKLI----QDSGLLSVITDSIHTPVTVFWPTDKALEALPPEQQDF 661 Query: 444 LSQQDQVTLVQAHI 485 L QD +++++ Sbjct: 662 LFNQDNKDKLKSYL 675
>BGH3_RABIT (Q95215) Transforming growth factor-beta-induced protein ig-h3| precursor (Beta ig-h3) (Kerato-epithelin) (RGD-containing collagen-associated protein) (RGD-CAP) Length = 683 Score = 33.5 bits (75), Expect = 0.35 Identities = 14/22 (63%), Positives = 17/22 (77%) Frame = +3 Query: 381 FTVFAPTDNAFNSLKPGTLNSL 446 +TVFAPT+ AF +L PG LN L Sbjct: 537 YTVFAPTNEAFQALPPGELNKL 558
>MP70_MYCTU (P0A668) Immunogenic protein MPT70 precursor| Length = 193 Score = 33.5 bits (75), Expect = 0.35 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%) Frame = +3 Query: 345 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSLSQQDQV--TLVQAHIV 488 QLN Q N DT +TVFAPT+ AF+ L T++ L + +++ H+V Sbjct: 80 QLNPQVNLVDTLNSGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVV 133
>MP70_MYCBO (P0A669) Immunogenic protein MPB70 precursor| Length = 193 Score = 33.5 bits (75), Expect = 0.35 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%) Frame = +3 Query: 345 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSLSQQDQV--TLVQAHIV 488 QLN Q N DT +TVFAPT+ AF+ L T++ L + +++ H+V Sbjct: 80 QLNPQVNLVDTLNSGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVV 133
>CROC_DROME (P32027) Fork head domain protein crocodile (FKH protein FD1)| Length = 508 Score = 32.3 bits (72), Expect = 0.79 Identities = 19/64 (29%), Positives = 28/64 (43%) Frame = +2 Query: 299 VHQVHPADGVDAAGHAAERAGQRVGHGLHGVRPHRQRLQQPQAGHPQLALAAGPGDARAG 478 +H VH A AA H A++ + V H H + P Q +GH ++ G A G Sbjct: 295 MHHVHHA----AAAHHAQQLQRHVAHVAHPLTPGGQGAGGQSSGHSPTTISTPHGPAHGG 350 Query: 479 AHRP 490 + P Sbjct: 351 WYTP 354
>MP70_MYCKA (Q49614) Immunogenic protein MPT70 analog precursor (Fragment)| Length = 121 Score = 31.2 bits (69), Expect = 1.8 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 4/38 (10%) Frame = +3 Query: 345 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSL 446 +LN Q N DT +TVFAPTD AF+ L T+ L Sbjct: 78 RLNPQVNLVDTLNNGQYTVFAPTDPAFDKLPASTIVQL 115
>POSTN_HUMAN (Q15063) Periostin precursor (PN) (Osteoblast-specific factor 2)| (OSF-2) Length = 836 Score = 30.8 bits (68), Expect = 2.3 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = +3 Query: 372 DTGFTVFAPTDNAFNSLKPGTLNSLSQQDQV---TLVQAHIVPTFYSMES 512 D FT+FAPT+ AF L G L + D+V L++ HI+ T ES Sbjct: 266 DGHFTLFAPTNEAFEKLPRGVLERI-MGDKVASEALMKYHILNTLQCSES 314
>BGH3_MOUSE (P82198) Transforming growth factor-beta-induced protein ig-h3| precursor (Beta ig-h3) Length = 683 Score = 30.8 bits (68), Expect = 2.3 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Frame = +3 Query: 264 PNVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNS 443 P + V++ +F L+A+ Q + E +TVFAPT+ AF ++ P LN Sbjct: 500 PPMGTVMDVLKGDNRFSMLVAAIQSAGLMEILNREGV--YTVFAPTNEAFQAMPPEELNK 557 Query: 444 L--SQQDQVTLVQAHI 485 L + ++ +++ HI Sbjct: 558 LLANAKELTNILKYHI 573 Score = 29.3 bits (64), Expect = 6.7 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +3 Query: 366 ESDTGFTVFAPTDNAFNSLKPGTLNSLSQQDQVTLVQA 479 E FT+FAP++ A++SL L+SL + L+ A Sbjct: 133 EGPGSFTIFAPSNEAWSSLPAEVLDSLVSNVNIELLNA 170
>STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein)| Length = 2571 Score = 30.4 bits (67), Expect = 3.0 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 4/86 (4%) Frame = +3 Query: 267 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSL 446 NVTA E G Y F RL+ L + S FT+ PTD+A +L P N L Sbjct: 1728 NVTAAAESFG-YKIFSRLLTVAGLLPMLQ---DASHRPFTMLWPTDSALQALPPDRKNWL 1783 Query: 447 SQQDQ----VTLVQAHIVPTFYSMES 512 +D +++ H++ ++ S Sbjct: 1784 FHEDHRDKLAAILRGHMIRNIEALAS 1809
>TAU_HYLLA (Q5YCV9) Microtubule-associated protein tau| Length = 775 Score = 29.6 bits (65), Expect = 5.1 Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 15/77 (19%) Frame = +2 Query: 329 DAAGHAAER--AGQRVGHGLHGVRPHRQRLQQPQAGHPQLAL-------------AAGPG 463 +AAGH + +G+ V G G R Q +G P L GP Sbjct: 116 EAAGHVTQEPESGKVVREGFLGEPGPRSXSHQLASGMPGAPLLPEGPREATRQPSGTGPE 175 Query: 464 DARAGAHRPHLLLHGVL 514 D G H P LL H +L Sbjct: 176 DTEGGRHAPELLKHQLL 192
>POSTN_MOUSE (Q62009) Periostin precursor (PN) (Osteoblast-specific factor 2)| (OSF-2) Length = 838 Score = 29.6 bits (65), Expect = 5.1 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = +3 Query: 372 DTGFTVFAPTDNAFNSLKPGTLNSLSQQDQV---TLVQAHIVPTFYSMES 512 D FT+FAPT+ AF L G L + D+V L++ HI+ T E+ Sbjct: 268 DGHFTLFAPTNEAFEKLPRGVLERI-MGDKVASEALMKYHILNTLQCSEA 316
>STAB2_MOUSE (Q8R4U0) Stabilin-2 precursor [Contains: Short form stabilin-2]| Length = 2559 Score = 29.6 bits (65), Expect = 5.1 Identities = 22/73 (30%), Positives = 34/73 (46%) Frame = +3 Query: 267 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSL 446 N+T V G YTKF +L+ Q L + T T+F PTD A +L + L Sbjct: 1750 NLTTVAANHG-YTKFSKLI---QDSGLLKVITDPMHTPVTLFWPTDKALQALPQEQQDFL 1805 Query: 447 SQQDQVTLVQAHI 485 +D ++A++ Sbjct: 1806 FNEDNKDKLKAYL 1818
>MP83_MYCTU (P0A670) Cell surface lipoprotein MPT83 precursor (Lipoprotein p23)| Length = 220 Score = 29.3 bits (64), Expect = 6.7 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%) Frame = +3 Query: 345 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSLSQQDQV--TLVQAHIV 488 +LN N DT +TVFAPT+ AF+ L T++ L ++ +++ H++ Sbjct: 106 KLNPDVNLVDTLNGGEYTVFAPTNAAFDKLPAATIDQLKTDAKLLSSILTYHVI 159
>MP83_MYCBO (P0A671) Cell surface lipoprotein MPB83 precursor (Lipoprotein p23)| Length = 220 Score = 29.3 bits (64), Expect = 6.7 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%) Frame = +3 Query: 345 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSLSQQDQV--TLVQAHIV 488 +LN N DT +TVFAPT+ AF+ L T++ L ++ +++ H++ Sbjct: 106 KLNPDVNLVDTLNGGEYTVFAPTNAAFDKLPAATIDQLKTDAKLLSSILTYHVI 159
>HNRPU_HUMAN (Q00839) Heterogenous nuclear ribonucleoprotein U (hnRNP U)| (Scaffold attachment factor A) (SAF-A) (p120) (pp120) Length = 824 Score = 29.3 bits (64), Expect = 6.7 Identities = 17/46 (36%), Positives = 20/46 (43%) Frame = +2 Query: 320 DGVDAAGHAAERAGQRVGHGLHGVRPHRQRLQQPQAGHPQLALAAG 457 +G D G E AG GHG +P + QQPQ AAG Sbjct: 140 EGEDELGDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAAKEAAG 185
>VPS33_YEAST (P20795) Vacuolar protein sorting 33 (SLP1 protein)| Length = 691 Score = 29.3 bits (64), Expect = 6.7 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +3 Query: 432 TLNSLSQQDQVTLVQAHIVPTFYSMESF 515 TLN +SQ D+V +VQ ++P S+ +F Sbjct: 21 TLNEISQNDEVLVVQPSVLPVLNSLLTF 48
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 28.9 bits (63), Expect = 8.7 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 4/50 (8%) Frame = +2 Query: 353 RAGQRVGHGLHGVRPHR----QRLQQPQAGHPQLALAAGPGDARAGAHRP 490 R GQR G G G RP Q +PQ G Q A A + + G RP Sbjct: 263 RGGQRQGAGAGGPRPQGGPRPQGGSRPQGGSAQGAQGAPSQERQGGGRRP 312 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,603,442 Number of Sequences: 219361 Number of extensions: 646209 Number of successful extensions: 2525 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2429 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2518 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
