ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart22h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FD2_DROME (Q02360) Fork head domain protein FD2 30 4.5
2Y4103_VIBPA (Q87JZ5) UPF0189 protein VPA0103 29 7.8
3M3K1_MOUSE (P53349) Mitogen-activated protein kinase kinase kina... 29 7.8

>FD2_DROME (Q02360) Fork head domain protein FD2|
          Length = 365

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 380 RPRLSKNRRSPRSLGGAGAEGTLRGAGAPA 469
           R ++S N  +P ++GGAG EG + G+ +PA
Sbjct: 30  RTQVSPNPLAPSAVGGAGMEGLMCGSFSPA 59



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>Y4103_VIBPA (Q87JZ5) UPF0189 protein VPA0103|
          Length = 170

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 398 NRRSPRSLGGAGAEGTLRGAGAPASIS 478
           N  +PR LGG G +G +  A  PA I+
Sbjct: 21  NAANPRMLGGGGVDGAIHRAAGPALIN 47



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>M3K1_MOUSE (P53349) Mitogen-activated protein kinase kinase kinase 1 (EC|
           2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1)
           (MEKK 1)
          Length = 1493

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 407 SPRSLGGAGAEGTLRGAGAPAS 472
           SP + GG G  G L+G+GAPA+
Sbjct: 21  SPEAGGGGGGGGALQGSGAPAA 42


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,789,284
Number of Sequences: 219361
Number of extensions: 712186
Number of successful extensions: 3516
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3508
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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