ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart22g10 |
|---|---|
| Clone Library Name | barley_pub |
>CHMP3_XENLA (Q6NRM7) Charged multivesicular body protein 3 (Chromatin-modifying| protein 3) (Vacuolar protein sorting 24) Length = 219 Score = 72.4 bits (176), Expect(2) = 4e-19 Identities = 37/65 (56%), Positives = 47/65 (72%) Frame = +2 Query: 374 LAKEVVQSRKAVNRLYENKAQLNSISMHLGEIVATTRTVGHLSKSTEVMKLVNSLMKAPE 553 LAKEVVQS+KAVN+LY +KA +NS+ M + +A R G L KSTEVMK + +L+K PE Sbjct: 62 LAKEVVQSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKLPE 121 Query: 554 IAVTM 568 I TM Sbjct: 122 IQATM 126 Score = 41.6 bits (96), Expect(2) = 4e-19 Identities = 17/31 (54%), Positives = 29/31 (93%) Frame = +1 Query: 163 EGRNIERQIRDVQKEEKKVEKAIREAAKRGD 255 E R I+RQIRD+Q+E++KV+++I+E+AK+G+ Sbjct: 25 EMRVIDRQIRDIQREQEKVKRSIKESAKKGN 55
>CHMP3_BRARE (Q6NY88) Charged multivesicular body protein 3 (Chromatin-modifying| protein 3) (Vacuolar protein sorting 24) Length = 220 Score = 70.5 bits (171), Expect(2) = 9e-19 Identities = 33/65 (50%), Positives = 48/65 (73%) Frame = +2 Query: 374 LAKEVVQSRKAVNRLYENKAQLNSISMHLGEIVATTRTVGHLSKSTEVMKLVNSLMKAPE 553 LAKE++QS++A+N+LY +KAQ+NS+ + + ++ R G L KSTEVMK + SL+K PE Sbjct: 62 LAKEMIQSKRAINKLYASKAQMNSVLLSMKNQLSVLRVAGALQKSTEVMKAMQSLVKIPE 121 Query: 554 IAVTM 568 I TM Sbjct: 122 IQATM 126 Score = 42.4 bits (98), Expect(2) = 9e-19 Identities = 18/30 (60%), Positives = 28/30 (93%) Frame = +1 Query: 163 EGRNIERQIRDVQKEEKKVEKAIREAAKRG 252 E R I+RQIRD+Q+EE+KV+++I++AAK+G Sbjct: 25 EMRVIDRQIRDIQREEEKVKRSIKDAAKKG 54
>CHMP3_XENTR (Q5BKM3) Charged multivesicular body protein 3 (Chromatin-modifying| protein 3) (Vacuolar protein sorting 24) Length = 219 Score = 70.5 bits (171), Expect(2) = 1e-18 Identities = 36/65 (55%), Positives = 46/65 (70%) Frame = +2 Query: 374 LAKEVVQSRKAVNRLYENKAQLNSISMHLGEIVATTRTVGHLSKSTEVMKLVNSLMKAPE 553 LAKEVV S+KAVN+LY +KA +NS+ M + +A R G L KSTEVMK + +L+K PE Sbjct: 62 LAKEVVHSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKIPE 121 Query: 554 IAVTM 568 I TM Sbjct: 122 IQATM 126 Score = 41.6 bits (96), Expect(2) = 1e-18 Identities = 17/31 (54%), Positives = 29/31 (93%) Frame = +1 Query: 163 EGRNIERQIRDVQKEEKKVEKAIREAAKRGD 255 E R I+RQIRD+Q+E++KV+++I+E+AK+G+ Sbjct: 25 EMRLIDRQIRDIQREQEKVKRSIKESAKKGN 55
>CHMP3_MOUSE (Q9CQ10) Charged multivesicular body protein 3 (Chromatin-modifying| protein 3) (Vacuolar protein sorting 24) Length = 223 Score = 70.1 bits (170), Expect(2) = 2e-18 Identities = 35/65 (53%), Positives = 47/65 (72%) Frame = +2 Query: 374 LAKEVVQSRKAVNRLYENKAQLNSISMHLGEIVATTRTVGHLSKSTEVMKLVNSLMKAPE 553 LAKE+++SRKAV++LY +KA +NS+ M + +A R G L KSTEVMK + SL+K PE Sbjct: 62 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 121 Query: 554 IAVTM 568 I TM Sbjct: 122 IQATM 126 Score = 41.6 bits (96), Expect(2) = 2e-18 Identities = 16/30 (53%), Positives = 28/30 (93%) Frame = +1 Query: 163 EGRNIERQIRDVQKEEKKVEKAIREAAKRG 252 E R ++RQIRD+Q+EE+KV++++++AAK+G Sbjct: 25 EMRVVDRQIRDIQREEEKVKRSVKDAAKKG 54
>CHMP3_RAT (Q8CGS4) Charged multivesicular body protein 3 (Chromatin-modifying| protein 3) (Vacuolar protein sorting 24) (mVps24p) Length = 222 Score = 70.1 bits (170), Expect(2) = 2e-18 Identities = 35/65 (53%), Positives = 47/65 (72%) Frame = +2 Query: 374 LAKEVVQSRKAVNRLYENKAQLNSISMHLGEIVATTRTVGHLSKSTEVMKLVNSLMKAPE 553 LAKE+++SRKAV++LY +KA +NS+ M + +A R G L KSTEVMK + SL+K PE Sbjct: 62 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 121 Query: 554 IAVTM 568 I TM Sbjct: 122 IQATM 126 Score = 41.6 bits (96), Expect(2) = 2e-18 Identities = 16/30 (53%), Positives = 28/30 (93%) Frame = +1 Query: 163 EGRNIERQIRDVQKEEKKVEKAIREAAKRG 252 E R ++RQIRD+Q+EE+KV++++++AAK+G Sbjct: 25 EMRVVDRQIRDIQREEEKVKRSVKDAAKKG 54
>CHMP3_PONPY (Q5RAU5) Charged multivesicular body protein 3 (Chromatin-modifying| protein 3) (Vacuolar protein sorting 24) Length = 221 Score = 70.1 bits (170), Expect(2) = 2e-18 Identities = 35/65 (53%), Positives = 47/65 (72%) Frame = +2 Query: 374 LAKEVVQSRKAVNRLYENKAQLNSISMHLGEIVATTRTVGHLSKSTEVMKLVNSLMKAPE 553 LAKE+++SRKAV++LY +KA +NS+ M + +A R G L KSTEVMK + SL+K PE Sbjct: 62 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 121 Query: 554 IAVTM 568 I TM Sbjct: 122 IQATM 126 Score = 41.6 bits (96), Expect(2) = 2e-18 Identities = 16/30 (53%), Positives = 28/30 (93%) Frame = +1 Query: 163 EGRNIERQIRDVQKEEKKVEKAIREAAKRG 252 E R ++RQIRD+Q+EE+KV++++++AAK+G Sbjct: 25 EMRVVDRQIRDIQREEEKVKRSVKDAAKKG 54
>CHMP3_MACFA (Q4R574) Charged multivesicular body protein 3 (Chromatin-modifying| protein 3) (Vacuolar protein sorting 24) Length = 221 Score = 70.1 bits (170), Expect(2) = 2e-18 Identities = 35/65 (53%), Positives = 47/65 (72%) Frame = +2 Query: 374 LAKEVVQSRKAVNRLYENKAQLNSISMHLGEIVATTRTVGHLSKSTEVMKLVNSLMKAPE 553 LAKE+++SRKAV++LY +KA +NS+ M + +A R G L KSTEVMK + SL+K PE Sbjct: 62 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 121 Query: 554 IAVTM 568 I TM Sbjct: 122 IRATM 126 Score = 41.6 bits (96), Expect(2) = 2e-18 Identities = 16/30 (53%), Positives = 28/30 (93%) Frame = +1 Query: 163 EGRNIERQIRDVQKEEKKVEKAIREAAKRG 252 E R ++RQIRD+Q+EE+KV++++++AAK+G Sbjct: 25 EMRVVDRQIRDIQREEEKVKRSVKDAAKKG 54
>CHMP3_HUMAN (Q9Y3E7) Charged multivesicular body protein 3 (Chromatin-modifying| protein 3) (Vacuolar protein sorting 24) (hVps24) (Neuroendocrine differentiation factor) Length = 221 Score = 70.1 bits (170), Expect(2) = 2e-18 Identities = 35/65 (53%), Positives = 47/65 (72%) Frame = +2 Query: 374 LAKEVVQSRKAVNRLYENKAQLNSISMHLGEIVATTRTVGHLSKSTEVMKLVNSLMKAPE 553 LAKE+++SRKAV++LY +KA +NS+ M + +A R G L KSTEVMK + SL+K PE Sbjct: 62 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 121 Query: 554 IAVTM 568 I TM Sbjct: 122 IQATM 126 Score = 41.6 bits (96), Expect(2) = 2e-18 Identities = 16/30 (53%), Positives = 28/30 (93%) Frame = +1 Query: 163 EGRNIERQIRDVQKEEKKVEKAIREAAKRG 252 E R ++RQIRD+Q+EE+KV++++++AAK+G Sbjct: 25 EMRVVDRQIRDIQREEEKVKRSVKDAAKKG 54
>CHMP3_BOVIN (Q58CS7) Charged multivesicular body protein 3 (Chromatin-modifying| protein 3) (Vacuolar protein sorting 24) Length = 221 Score = 70.1 bits (170), Expect(2) = 2e-18 Identities = 35/65 (53%), Positives = 47/65 (72%) Frame = +2 Query: 374 LAKEVVQSRKAVNRLYENKAQLNSISMHLGEIVATTRTVGHLSKSTEVMKLVNSLMKAPE 553 LAKE+++SRKAV++LY +KA +NS+ M + +A R G L KSTEVMK + SL+K PE Sbjct: 62 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 121 Query: 554 IAVTM 568 I TM Sbjct: 122 IQATM 126 Score = 41.6 bits (96), Expect(2) = 2e-18 Identities = 16/30 (53%), Positives = 28/30 (93%) Frame = +1 Query: 163 EGRNIERQIRDVQKEEKKVEKAIREAAKRG 252 E R ++RQIRD+Q+EE+KV++++++AAK+G Sbjct: 25 EMRVVDRQIRDIQREEEKVKRSVKDAAKKG 54
>VPS24_YEAST (P36095) Vacuolar protein sorting protein 24 (DOA4-independent| degradation protein 3) Length = 224 Score = 47.0 bits (110), Expect(2) = 8e-09 Identities = 22/68 (32%), Positives = 41/68 (60%) Frame = +2 Query: 365 MKALAKEVVQSRKAVNRLYENKAQLNSISMHLGEIVATTRTVGHLSKSTEVMKLVNSLMK 544 ++ AKE+ Q K +R+Y ++AQL+S+ M + E + ++ S +M+ VNSL++ Sbjct: 61 VRLYAKELYQINKQYDRMYTSRAQLDSVRMKIDEAIRMNTLSNQMADSAGLMREVNSLVR 120 Query: 545 APEIAVTM 568 P++ TM Sbjct: 121 LPQLRNTM 128 Score = 32.0 bits (71), Expect(2) = 8e-09 Identities = 13/53 (24%), Positives = 28/53 (52%) Frame = +1 Query: 115 PTPXXXXXXXXXXXXNEGRNIERQIRDVQKEEKKVEKAIREAAKRGDMGSAKV 273 P P GRNIE+ +R++ + K ++ I+++AK+ D+ + ++ Sbjct: 11 PDPKEQQRRIRSVLRKNGRNIEKSLRELTVLQNKTQQLIKKSAKKNDVRTVRL 63
>IL6RA_MOUSE (P22272) Interleukin-6 receptor alpha chain precursor (IL-6R-alpha)| (IL-6R 1) (CD126 antigen) Length = 460 Score = 33.1 bits (74), Expect = 0.56 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Frame = +2 Query: 257 WDPPRYPLTYTLRYRSIWAQTMRICV*VLVFLGCWCMKAL--AKEVVQSR 400 WDP Y L + LRYR +W++ + + + C AL K VVQ R Sbjct: 241 WDPSYYLLQFQLRYRPVWSKEFTVLLLPVAQYQCVIHDALRGVKHVVQVR 290
>IL6RA_RAT (P22273) Interleukin-6 receptor alpha chain precursor (IL-6R-alpha)| (IL-6R 1) (CD126 antigen) Length = 462 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Frame = +2 Query: 257 WDPPRYPLTYTLRYRSIWAQTMRICV*VLVFLGCWCMKAL--AKEVVQSR 400 WDP Y L + LRYR +W++ + + C AL K VVQ R Sbjct: 241 WDPSYYLLQFELRYRPVWSKXFTVWPLQVAQHQCVIHDALRGVKHVVQVR 290
>CHM2A_BRARE (Q7ZW25) Charged multivesicular body protein 2a| (Chromatin-modifying protein 2a) (CHMP2a) Length = 220 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/61 (22%), Positives = 33/61 (54%) Frame = +1 Query: 91 VKNLLKPKPTPXXXXXXXXXXXXNEGRNIERQIRDVQKEEKKVEKAIREAAKRGDMGSAK 270 +++L + TP R+++R+ + ++++EKK+ I++ AK+G M + K Sbjct: 1 MESLFGRRKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVK 60 Query: 271 V 273 + Sbjct: 61 I 61
>Y456_TREPA (O83469) Hypothetical lipoprotein TP0456 precursor| Length = 438 Score = 30.0 bits (66), Expect = 4.8 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -1 Query: 376 QRLHTPTTEENQNSHADTHRLRPNRSIAQ 290 QRLH PT + + H+D H L +R +A+ Sbjct: 290 QRLHLPTASTSSDHHSDLHELLVHRLLAR 318
>WASF4_HUMAN (Q8IV90) Wiskott-Aldrich syndrome protein family member 4| (WASP-family protein member 4) Length = 625 Score = 30.0 bits (66), Expect = 4.8 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Frame = +1 Query: 190 RDVQKEEKKVEKAIREAAKRGDMGSAKVPTYIYSALSIDLGADDAYLRVS---FGFPRLL 360 RD+ KE++K K ++ RG++ K+ T I +G + + FG+P L Sbjct: 297 RDIMKEKRKHRKEKKDNPNRGNVNPRKIKTRKEEWEKIKMGQEFVESKEKLGPFGYPPTL 356 Query: 361 VY 366 VY Sbjct: 357 VY 358
>CHM2A_XENLA (Q6IP52) Charged multivesicular body protein 2a| (Chromatin-modifying protein 2a) (CHMP2a) Length = 220 Score = 30.0 bits (66), Expect = 4.8 Identities = 11/35 (31%), Positives = 25/35 (71%) Frame = +1 Query: 169 RNIERQIRDVQKEEKKVEKAIREAAKRGDMGSAKV 273 R ++R+ + ++++EKK+ I++ AK+G M + K+ Sbjct: 27 RELDRERQKLEQQEKKIIADIKKMAKQGQMDAVKI 61
>SYFA_METKA (Q8TYM5) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 524 Score = 29.6 bits (65), Expect = 6.2 Identities = 12/36 (33%), Positives = 25/36 (69%) Frame = +1 Query: 172 NIERQIRDVQKEEKKVEKAIREAAKRGDMGSAKVPT 279 ++E R ++ +E++VEKA++ ++RGD+ A+ T Sbjct: 161 SVEELARKLEMDEEEVEKALKRLSERGDVLRAREET 196
>LMNA_CHICK (P13648) Lamin-A| Length = 657 Score = 29.6 bits (65), Expect = 6.2 Identities = 12/29 (41%), Positives = 21/29 (72%) Frame = +1 Query: 163 EGRNIERQIRDVQKEEKKVEKAIREAAKR 249 E RN+E ++RD++ + K+E A+ EA K+ Sbjct: 153 EKRNLENEVRDLRAQVAKLEGALSEAKKQ 181
>CHM2A_XENTR (Q6DFS6) Charged multivesicular body protein 2a| (Chromatin-modifying protein 2a) (CHMP2a) Length = 220 Score = 29.6 bits (65), Expect = 6.2 Identities = 11/35 (31%), Positives = 25/35 (71%) Frame = +1 Query: 169 RNIERQIRDVQKEEKKVEKAIREAAKRGDMGSAKV 273 R ++R+ + ++++EKK+ I++ AK+G M + K+ Sbjct: 27 REMDRERQKLEQQEKKIIADIKKMAKQGQMDAVKI 61
>OFD1_HUMAN (O75665) Oral-facial-digital syndrome 1 protein (Protein 71-7A)| Length = 1012 Score = 29.3 bits (64), Expect = 8.1 Identities = 15/46 (32%), Positives = 27/46 (58%) Frame = +1 Query: 172 NIERQIRDVQKEEKKVEKAIREAAKRGDMGSAKVPTYIYSALSIDL 309 N + +++++Q+E +++EKA R +R SAK P S S+ L Sbjct: 630 NTKARVKELQQEAERLEKAFRSYHRRVIKNSAKSPLAAKSPPSLHL 675 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,056,595 Number of Sequences: 219361 Number of extensions: 842858 Number of successful extensions: 3222 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3090 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3222 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
