ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart22g06 |
|---|---|
| Clone Library Name | barley_pub |
>WRK17_ARATH (Q9SJA8) Probable WRKY transcription factor 17 (WRKY DNA-binding| protein 17) Length = 321 Score = 92.8 bits (229), Expect = 5e-19 Identities = 64/140 (45%), Positives = 82/140 (58%), Gaps = 15/140 (10%) Frame = +3 Query: 90 MTMDLIGGYGRADEQVAIQEAAAAGLRGMEHLILQLSRTGTSESSPVGSSEAPEQGKQQV 269 MT+D++ + ++Q AIQEAA+ GL+ MEHLI LS PE+ + V Sbjct: 1 MTVDIMR-LPKMEDQTAIQEAASQGLKSMEHLIRVLSNR-------------PEE--RNV 44 Query: 270 DCREITDMTVSKFKKVISILNHRTGHARFRRGPV-------------VAQSQGPAVSEPA 410 DC EITD TVSKFKKVIS+LN R+GHARFRRGPV V +S PA Sbjct: 45 DCSEITDFTVSKFKKVISLLN-RSGHARFRRGPVHSPPSSSVPPPVKVTTPAPTQISAPA 103 Query: 411 PVR--ASSSRSMTLDFTKAS 464 PV ++ +S+TLDFT+ S Sbjct: 104 PVSFVQANQQSVTLDFTRPS 123
>WRK11_ARATH (Q9SV15) Probable WRKY transcription factor 11 (WRKY DNA-binding| protein 11) Length = 325 Score = 88.6 bits (218), Expect = 1e-17 Identities = 66/144 (45%), Positives = 84/144 (58%), Gaps = 19/144 (13%) Frame = +3 Query: 90 MTMDLIGGYGRADEQVAIQEAAAAGLRGMEHLILQLSRTGTSESSPVGSSEAPEQGKQQV 269 M +DL+ + + D+Q AIQEAA+ GL+ MEHLI LS PEQ + V Sbjct: 1 MAVDLMR-FPKIDDQTAIQEAASQGLQSMEHLIRVLSNR-------------PEQ-QHNV 45 Query: 270 DCREITDMTVSKFKKVISILNHRTGHARFRRGPVVA---------QSQGPAVSEP-APVR 419 DC EITD TVSKFK VIS+LN RTGHARFRRGPV + QSQ ++P AP+ Sbjct: 46 DCSEITDFTVSKFKTVISLLN-RTGHARFRRGPVHSTSSAASQKLQSQIVKNTQPEAPIV 104 Query: 420 ASSSR---------SMTLDFTKAS 464 +++ S+TLDF+K S Sbjct: 105 RTTTNHPQIVPPPSSVTLDFSKPS 128
>WRK15_ARATH (O22176) Probable WRKY transcription factor 15 (WRKY DNA-binding| protein 15) Length = 317 Score = 71.2 bits (173), Expect = 2e-12 Identities = 56/149 (37%), Positives = 73/149 (48%), Gaps = 20/149 (13%) Frame = +3 Query: 81 VAMMTMDLIGGYGRADEQVAIQEAAAAGLRGMEHLILQLSRTGTSESSPVGSSEAPEQGK 260 V +MT + I G G + A+QEAAA+GL+ +E+ I +SR + P SS A Sbjct: 3 VELMTRNYISGVGA--DSFAVQEAAASGLKSIENFIGLMSRDSFNSDQP-SSSSASASAS 59 Query: 261 QQVDCRE----ITDMTVSKFKKVISILNH-RTGHARFRRGPVVAQS-------------Q 386 D D VSKFK+VIS+L+ RTGHARFRR PV S Q Sbjct: 60 AAADLESARNTTADAAVSKFKRVISLLDRTRTGHARFRRAPVHVISPVLLQEEPKTTPFQ 119 Query: 387 GPAVSEPAPVR--ASSSRSMTLDFTKASS 467 P P +R + SS T+DF+ SS Sbjct: 120 SPLPPPPQMIRKGSFSSSMKTIDFSSLSS 148
>WRKY7_ARATH (Q9STX0) Probable WRKY transcription factor 7 (WRKY DNA-binding| protein 7) Length = 353 Score = 66.2 bits (160), Expect = 5e-11 Identities = 51/151 (33%), Positives = 72/151 (47%), Gaps = 18/151 (11%) Frame = +3 Query: 81 VAMMTMDLIGGYGRAD-----------EQVAIQEAAAAGLRGMEHLILQLSRTGTSESSP 227 V +M GG G D E A++EAA+AG+ G+E + Sbjct: 3 VELMMSSYSGGGGGGDGFPAIAAAAKMEDTALREAASAGIHGVEEFL-----------KL 51 Query: 228 VGSSEAPEQGKQQVDCREITDMTVSKFKKVISILNH-RTGHARFRRGPVVAQS---QGPA 395 +G S+ P + K Q + +TD+ V+ FKKVIS+L RTGHARFRR P Q+ Q P Sbjct: 52 IGQSQQPTE-KSQTEITAVTDVAVNSFKKVISLLGRSRTGHARFRRAPASTQTPFKQTPV 110 Query: 396 VSEPAPV---RASSSRSMTLDFTKASSGYGN 479 V E V + +S +T T+ G G+ Sbjct: 111 VEEEVEVEEKKPETSSVLTKQKTEQYHGGGS 141
>Y319_THET8 (Q5SLH4) UPF0042 protein TTHA0319| Length = 273 Score = 32.3 bits (72), Expect = 0.87 Identities = 19/45 (42%), Positives = 24/45 (53%) Frame = +3 Query: 111 GYGRADEQVAIQEAAAAGLRGMEHLILQLSRTGTSESSPVGSSEA 245 G G ++A + A AGLRG HL++ TSE SP G EA Sbjct: 102 GAGNLMREIAEERRALAGLRGRAHLVVD-----TSELSPRGLKEA 141
>Y1664_THET2 (Q72H31) UPF0042 protein TT_C1664| Length = 273 Score = 32.3 bits (72), Expect = 0.87 Identities = 19/45 (42%), Positives = 24/45 (53%) Frame = +3 Query: 111 GYGRADEQVAIQEAAAAGLRGMEHLILQLSRTGTSESSPVGSSEA 245 G G ++A + A AGLRG HL++ TSE SP G EA Sbjct: 102 GAGNLMREIAEERRALAGLRGRAHLVVD-----TSELSPRGLKEA 141
>AFF1_HUMAN (P51825) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene AF4)| (FEL protein) Length = 1210 Score = 31.6 bits (70), Expect = 1.5 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Frame = +3 Query: 273 CREITDMTVSKFKKVISILNHRTGHARFRRGPVVAQSQGPAVSE--------PAPVRASS 428 C+ I +M + + KK I+I RT + F VAQ+ P ++ P P ASS Sbjct: 1054 CQSILNMAMFRCKKDIAIKYSRTLNKHFESSSKVAQAPSPCIASTGTPSPLSPMPSPASS 1113 Query: 429 SRSMTLDFTKASSG 470 S + + SSG Sbjct: 1114 VGSQSSAGSVGSSG 1127
>TREF1_HUMAN (Q96PN7) Transcriptional-regulating factor 1| (Transcriptional-regulating protein 132) (Zinc finger transcription factor TReP-132) (Zinc finger protein rapa) Length = 1200 Score = 31.2 bits (69), Expect = 1.9 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%) Frame = +3 Query: 144 QEAAAAGLRGMEHLILQLSRTGTSESS--PVGSSEAPEQGKQQVDCREITDMTVSKFKKV 317 Q+ + + + HL ++ G+ ESS P G+ K ++ C + + +FK + Sbjct: 469 QQLSPSAMWPQMHLPDGRAQPGSPESSGQPKGAFGEQFDAKNKLTC----SICLKEFKNL 524 Query: 318 ISILNHRTGHARFRRGPVVAQSQGPAVSEPAP 413 ++ H H R P + Q +G V P P Sbjct: 525 PALNGHMRSHGGMRASPNLKQEEGEKVLPPQP 556
>VE2_HPV27 (P36789) Regulatory protein E2| Length = 388 Score = 30.8 bits (68), Expect = 2.5 Identities = 20/55 (36%), Positives = 26/55 (47%) Frame = -1 Query: 175 IPRSPAAAASWIATCSSALPYPPIRSMVIIATASASASQDKTGCSPDNENGATRP 11 I + A+ +S AT S P PIR V A ASA+ +TG +P T P Sbjct: 195 IHHTSASVSSTQATASDDEPLSPIRLAVSPVPAPASAASARTGTAPPTNLLCTAP 249
>YCW2_YEAST (P25382) Hypothetical WD-repeat protein YCR072C| Length = 515 Score = 30.4 bits (67), Expect = 3.3 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -1 Query: 418 LTGAGSDTAGPWDCATTGPRRNLA*PVRWL 329 +TGAG +TA WDC T P L W+ Sbjct: 160 VTGAGDNTARIWDCDTQTPMHTLKGHYNWV 189
>TRPE_METTM (P26940) Anthranilate synthase component 1 (EC 4.1.3.27)| (Anthranilate synthase component I) Length = 462 Score = 30.4 bits (67), Expect = 3.3 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Frame = +3 Query: 177 EHLIL-QLSRTGTSESSPVGSSEAPEQGKQQVDCREITDMTVSKFKKVISILNHRTGHAR 353 EHL+L L+R S GS E PE MT+ +F V IL+H TG R Sbjct: 301 EHLMLVDLARNDIGRVSEFGSVEVPEY------------MTIKRFSHVQHILSHVTGKLR 348
>SPEG_BRARE (Q696W0) Striated muscle preferentially expressed protein kinase (EC| 2.7.11.1) Length = 2995 Score = 30.4 bits (67), Expect = 3.3 Identities = 19/69 (27%), Positives = 31/69 (44%) Frame = -1 Query: 256 PCSGASEDPTGELSLVPVRESCKMRCSIPRSPAAAASWIATCSSALPYPPIRSMVIIATA 77 P S S+ + + + P + KM+ P S A + +AT + +L P + S I T Sbjct: 2498 PYSNESDGVSIDTKVTPQHQPAKMKTHSPASFPAMTAAVATSAFSLSLPSVFSQSISPTP 2557 Query: 76 SASASQDKT 50 + SA T Sbjct: 2558 AQSADVSNT 2566
>WRK21_ARATH (O04336) Probable WRKY transcription factor 21 (WRKY DNA-binding| protein 21) Length = 380 Score = 30.0 bits (66), Expect = 4.3 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +3 Query: 285 TDMTVSKFKKVISILNHRTGHARFRR 362 T V +FK+V S+L+ GHARFRR Sbjct: 41 TREAVIRFKRVGSLLSSSVGHARFRR 66
>CLPX_RHOBA (Q7UKU7) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 466 Score = 29.6 bits (65), Expect = 5.6 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 2/104 (1%) Frame = +3 Query: 87 MMTMDLIGGYGRADEQVAIQEAAAAGLRGMEHLILQLSRTGTSESSPVGSSEAPEQGKQQ 266 ++ +D + G + V+I + G++ +L++ + P G + PEQ Q Sbjct: 230 ILYIDEVDKIGSTNGNVSITRDVSG--EGVQQSLLKMLEGTVANVPPQGGRKHPEQQYIQ 287 Query: 267 VDCREITDMTVSKFKKVISILNHRTGHAR--FRRGPVVAQSQGP 392 +D I + F + I+ R GH F G V Q P Sbjct: 288 LDTSNILFICGGTFVGIEEIIRRRLGHRTLGFGEGANVRNEQTP 331
>WRK39_ARATH (Q9SR07) Probable WRKY transcription factor 39 (WRKY DNA-binding| protein 39) Length = 330 Score = 29.6 bits (65), Expect = 5.6 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +3 Query: 285 TDMTVSKFKKVISILNHRTGHARFR 359 T VSKFK+V S+L GH +FR Sbjct: 36 TGEVVSKFKRVASLLTRGLGHGKFR 60
>CLPX_FRATT (Q5NH46) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 417 Score = 29.6 bits (65), Expect = 5.6 Identities = 20/81 (24%), Positives = 33/81 (40%) Frame = +3 Query: 96 MDLIGGYGRADEQVAIQEAAAAGLRGMEHLILQLSRTGTSESSPVGSSEAPEQGKQQVDC 275 +D I R E +I + G++ +L+L S P G + P Q QVD Sbjct: 176 IDEIDKIARKSESTSITRDVSG--EGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQVDT 233 Query: 276 REITDMTVSKFKKVISILNHR 338 +I + F + ++ HR Sbjct: 234 SDILFICGGAFAGIEKVIKHR 254
>CLPX_RICCN (Q92GQ4) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 425 Score = 29.3 bits (64), Expect = 7.4 Identities = 15/60 (25%), Positives = 28/60 (46%) Frame = +3 Query: 171 GMEHLILQLSRTGTSESSPVGSSEAPEQGKQQVDCREITDMTVSKFKKVISILNHRTGHA 350 G++ +L++ + P G + P+Q Q+D I + F + SI+ RT H+ Sbjct: 203 GVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNILFICGGAFMGIDSIITSRTNHS 262
>LRCH1_MOUSE (P62046) Leucine-rich repeats and calponin homology| domain-containing protein 1 (Calponin homology domain-containing protein 1) Length = 709 Score = 29.3 bits (64), Expect = 7.4 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -3 Query: 206 CPGELQDEVLHPAQPRRRRLLDCHLLVRP 120 CP E+Q + + PRR +LL H+ +RP Sbjct: 541 CPEEVQGSLQAESSPRRPQLLSRHVFLRP 569
>CLPX_NOCFA (Q5Z061) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 426 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/59 (23%), Positives = 27/59 (45%) Frame = +3 Query: 171 GMEHLILQLSRTGTSESSPVGSSEAPEQGKQQVDCREITDMTVSKFKKVISILNHRTGH 347 G++ +L++ + P G + P Q Q+D + + F + I++ RTGH Sbjct: 208 GVQQALLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLEKIISDRTGH 266
>SCN5A_HUMAN (Q14524) Sodium channel protein type 5 alpha subunit (Sodium channel| protein type V alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.5) (Sodium channel protein, cardiac muscle alpha-subunit) (HH1) Length = 2016 Score = 28.9 bits (63), Expect = 9.6 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Frame = -1 Query: 523 DMKDELAAETLNPGSFPYPEDALVKSNVMDLDEDA-----LTGAGSDTAGPWDCATTG 365 D + + AE PG PED+ + + D+ A + G D P DC T G Sbjct: 1114 DWRQQWKAEPQAPGCGETPEDSCSEGSTADMTNTAELLEQIPDLGQDVKDPEDCFTEG 1171
>HELS_AERPE (Q9YFQ8) Putative ski2-type helicase (EC 3.6.1.-)| Length = 702 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +3 Query: 99 DLIGGYGRADEQVAIQEAAAAGLRGMEHLIL 191 DLI GY RA + E+ AGLRG+ H IL Sbjct: 370 DLISGYIRAPPERV--ESRLAGLRGLRHFIL 398
>BEM2_YEAST (P39960) GTPase-activating protein BEM2/IPL2 (Bud emergence protein| 2) Length = 2167 Score = 28.9 bits (63), Expect = 9.6 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 3/99 (3%) Frame = +3 Query: 195 LSRTGTSESSPVGSSEAPEQGKQQVDCREITDMTVSKFKKVISILNHRTGHARFRRGPVV 374 L+ +G S SS ++ + + R + + + + +TG G V Sbjct: 186 LNTSGISNSSGTNNNNSNNNNDNEQKQRNVIHLNSENYDTTV----FKTGWVNKSHGQTV 241 Query: 375 AQSQGPAVSEPAPVRASSSRSMTLDF---TKASSGYGND 482 A + +++ P+ +SSS+++ D + S YGND Sbjct: 242 ATNYNSSMTAPSSSSSSSSQNLRNDAYSRNRESRFYGND 280 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,591,439 Number of Sequences: 219361 Number of extensions: 1186225 Number of successful extensions: 5313 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5038 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5299 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
