>AOX1_TOBAC (Q41224) Alternative oxidase 1, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 353

 Score =  122 bits (305), Expect = 9e-28
 Identities = 54/74 (72%), Positives = 62/74 (83%)
 Frame = +1

Query: 325 EVAVNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYT 504
           E +V SYWG++ SK + +EDGTEWKW+CFRPWETY AD SIDLTKHH P T LDK AY+T
Sbjct: 100 EKSVVSYWGVQPSK-VTKEDGTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWT 158

Query: 505 VKSLRFPTDISFQR 546
           VKSLR+PTDI FQR
Sbjct: 159 VKSLRYPTDIFFQR 172

>AOX2_TOBAC (Q40578) Alternative oxidase 2, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 297

 Score =  119 bits (299), Expect = 4e-27
 Identities = 53/74 (71%), Positives = 61/74 (82%)
 Frame = +1

Query: 325 EVAVNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYT 504
           E +V SYWG+  SK + +EDGTEWKW+CFRPWETY AD SIDLTKHH P T LDK AY+T
Sbjct: 44  EKSVVSYWGVPPSK-VTKEDGTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWT 102

Query: 505 VKSLRFPTDISFQR 546
           VK+LR+PTDI FQR
Sbjct: 103 VKALRYPTDIFFQR 116

>AOX1A_ARATH (Q39219) Alternative oxidase 1a, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 354

 Score =  116 bits (290), Expect = 5e-26
 Identities = 49/71 (69%), Positives = 61/71 (85%)
 Frame = +1

Query: 334 VNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYTVKS 513
           + SYWG+E +K + +EDG+EWKW+CFRPWETY AD +IDL KHHVP T LD+IAY+TVKS
Sbjct: 104 IASYWGVEPNK-ITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIAYWTVKS 162

Query: 514 LRFPTDISFQR 546
           LR+PTD+ FQR
Sbjct: 163 LRWPTDLFFQR 173

>AOX1B_ARATH (O23913) Alternative oxidase 1b, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 325

 Score =  114 bits (286), Expect = 1e-25
 Identities = 49/74 (66%), Positives = 62/74 (83%)
 Frame = +1

Query: 325 EVAVNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYT 504
           E  + SYWG++  K + +EDGTEWKWSCFRPWETY +D +IDL KHHVP+T+ DK+AY+T
Sbjct: 72  EQLIVSYWGVKPMK-ITKEDGTEWKWSCFRPWETYKSDLTIDLKKHHVPSTLPDKLAYWT 130

Query: 505 VKSLRFPTDISFQR 546
           VKSLR+PTD+ FQR
Sbjct: 131 VKSLRWPTDLFFQR 144

>AOX1C_ARATH (O22048) Alternative oxidase 1c, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 329

 Score =  114 bits (285), Expect = 2e-25
 Identities = 50/74 (67%), Positives = 61/74 (82%)
 Frame = +1

Query: 325 EVAVNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYT 504
           E  + SYWG++  K + +EDGTEWKWSCFRPWETY AD +IDL KHHVP+T+ DKIAY+ 
Sbjct: 76  EQLIVSYWGVKPMK-ITKEDGTEWKWSCFRPWETYKADLTIDLKKHHVPSTLPDKIAYWM 134

Query: 505 VKSLRFPTDISFQR 546
           VKSLR+PTD+ FQR
Sbjct: 135 VKSLRWPTDLFFQR 148

>AOX1_SAUGU (P22185) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)|
          Length = 349

 Score =  108 bits (270), Expect = 1e-23
 Identities = 49/72 (68%), Positives = 59/72 (81%)
 Frame = +1

Query: 331 AVNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYTVK 510
           AV SYW +  SK + +EDG+EW+W+CFRPWETY AD SIDL KHHVP T+LDK+A  TVK
Sbjct: 98  AVVSYWAVPPSK-VSKEDGSEWRWTCFRPWETYQADLSIDLHKHHVPTTILDKLALRTVK 156

Query: 511 SLRFPTDISFQR 546
           +LR+PTDI FQR
Sbjct: 157 ALRWPTDIFFQR 168

>AOX2_SOYBN (Q41266) Alternative oxidase 2, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 333

 Score =  107 bits (267), Expect = 2e-23
 Identities = 47/73 (64%), Positives = 58/73 (79%)
 Frame = +1

Query: 328 VAVNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYTV 507
           V  +SYWGI + K +VREDGTEW W+CF PWE+Y ++ SIDLTKHHVP  +LDK+AY TV
Sbjct: 81  VVESSYWGISRPK-VVREDGTEWPWNCFMPWESYRSNVSIDLTKHHVPKNVLDKVAYRTV 139

Query: 508 KSLRFPTDISFQR 546
           K LR PTD+ F+R
Sbjct: 140 KLLRIPTDLFFKR 152

>AOX1_MANIN (Q40294) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)|
          Length = 318

 Score =  107 bits (266), Expect = 3e-23
 Identities = 47/74 (63%), Positives = 56/74 (75%)
 Frame = +1

Query: 325 EVAVNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYT 504
           +  V++YWGI + K + REDG+EW W+CF PWETY +D SIDL KHHVP T +DK AY T
Sbjct: 65  DAMVSNYWGISRPK-ITREDGSEWPWNCFMPWETYRSDLSIDLKKHHVPRTFMDKFAYRT 123

Query: 505 VKSLRFPTDISFQR 546
           VK LR PTDI FQR
Sbjct: 124 VKILRVPTDIFFQR 137

>AOX2_ARATH (O22049) Alternative oxidase 2, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 353

 Score =  106 bits (265), Expect = 4e-23
 Identities = 48/74 (64%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
 Frame = +1

Query: 328 VAVNSYWGIEQSK-KLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYT 504
           VAV SYWGIE +K K+ R+DG++W W+CF PWETY A+ SIDL KHHVP  + DK+AY  
Sbjct: 99  VAVPSYWGIETAKMKITRKDGSDWPWNCFMPWETYQANLSIDLKKHHVPKNIADKVAYRI 158

Query: 505 VKSLRFPTDISFQR 546
           VK LR PTDI FQR
Sbjct: 159 VKLLRIPTDIFFQR 172

>AOX1_SOYBN (Q07185) Alternative oxidase 1, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 321

 Score =  104 bits (260), Expect = 1e-22
 Identities = 46/74 (62%), Positives = 57/74 (77%)
 Frame = +1

Query: 325 EVAVNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYT 504
           E  + SYWGI+ SK + ++DGTEWKW+CF PW TY AD SIDL KH  P T LDK+A++T
Sbjct: 68  EKVIVSYWGIQPSK-ITKKDGTEWKWNCFSPWGTYKADLSIDLEKHMPPTTFLDKMAFWT 126

Query: 505 VKSLRFPTDISFQR 546
           VK LR+PTD+ FQR
Sbjct: 127 VKVLRYPTDVFFQR 140

>AOX3_ARATH (Q8LEE7) Alternative oxidase 3, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 318

 Score = 91.7 bits (226), Expect = 1e-18
 Identities = 35/71 (49%), Positives = 53/71 (74%)
 Frame = +1

Query: 334 VNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYTVKS 513
           +++YWGI  +K + + DG+ WKW+CF+PW++Y  D SID+TKHH P+   DK AY+TV++
Sbjct: 68  ISTYWGIPPTK-ITKPDGSAWKWNCFQPWDSYKPDVSIDVTKHHKPSNFTDKFAYWTVQT 126

Query: 514 LRFPTDISFQR 546
           L+ P  + FQR
Sbjct: 127 LKIPVQLFFQR 137

>AOX3_SOYBN (O03376) Alternative oxidase 3, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 326

 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 50/139 (35%), Positives = 65/139 (46%)
 Frame = +1

Query: 127 RMAGSVLLRHAGAGADRLFATTASPAARTALAGGEGAWARMMSXXXXXXXXXXXXXXXXX 306
           R A   LL   G    R  +T A    R    GG      +                   
Sbjct: 7   RSAARALLGGGGRSYYRQLSTAAIVEQRHQHGGGAFGSFHLRRMSTLPEVKDQHSEEKKN 66

Query: 307 XXXXXXEVAVNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLD 486
                    V SYWGI + K + REDGTEW W+CF PW++Y +D SID+TKHH P ++ D
Sbjct: 67  EVNGTSNAVVTSYWGITRPK-VRREDGTEWPWNCFMPWDSYHSDVSIDVTKHHTPKSLTD 125

Query: 487 KIAYYTVKSLRFPTDISFQ 543
           K+A+  VK LR  +DI F+
Sbjct: 126 KVAFRAVKFLRVLSDIYFK 144

>AOX_BLUGR (Q8X1N9) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)|
          Length = 358

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 460 HHVPNTMLDKIAYYTVKSLRFPTDIS 537
           H  P    D+IA Y V+ LRF TD++
Sbjct: 97  HRTPKDFSDRIALYLVRFLRFSTDLA 122

>TBC2_CHLRE (Q8VXP3) Tbc2 translation factor, chloroplast precursor|
          Length = 1115

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
 Frame = +1

Query: 94  AEAFLGAQMSSRM-----AGSVLLRHAG----AGADRLFATTASPAARTALAGGEGAWA 243
           A+A L  +MSS +     AG+  L+       AG +    TTA+P A  A AGG GA A
Sbjct: 240 ADALLDLEMSSILDDDDGAGARQLQQMSDDLAAGLEAAATTTAAPEAGVAAAGGTGAGA 298

>K1949_MACMU (Q5TM66) Protein KIAA1949 homolog|
          Length = 613

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 402 VLLQAMGDVHRGHVDRSHQAPRAQHDARQDRLL-HRQVAPLPHRHLLP 542
           VLL+A+G VH+    R  +  + Q   R + LL  R+  PL  R   P
Sbjct: 77  VLLEAIGPVHQNRFIRQERQQQQQQQQRSEELLAERKPVPLEARERRP 124

>K1949_HUMAN (Q6NYC8) Protein KIAA1949|
          Length = 613

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 402 VLLQAMGDVHRGHVDRSHQAPRAQHDARQDRLL-HRQVAPLPHRHLLP 542
           VLL+A+G VH+    R  +  + Q   R + LL  R+  PL  R   P
Sbjct: 77  VLLEAIGPVHQNRFIRQERQQQQQQQQRSEELLAERKPGPLEARERRP 124

>NOIL_ELAOL (Q8S3M3) NOI-like protein|
          Length = 228

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 438 HVDRSHQAPRAQHDARQDRLLHRQV-APLPHR 530
           HV + H   R +H  R+DR  HR V AP PHR
Sbjct: 74  HVVKQH---RRKHHRREDREFHRYVEAPRPHR 102

>COBS_HALSA (Q9HPL2) Cobalamin synthase (EC 2.-.-.-)|
          Length = 199

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +1

Query: 106 LGAQMSSRMAGSVLLRHAGAGADRLFATTASPAARTALAGGEGAWA 243
           LG+Q +       L   AG       A+  SPAA  ALAG  GA A
Sbjct: 115 LGSQFTGNATPGALPAVAGVALPVALASVPSPAAAGALAGAVGAGA 160


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,700,183
Number of Sequences: 219361
Number of extensions: 696129
Number of successful extensions: 2797
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2794
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)