ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart22f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y4WH_RHISN (P55686) Hypothetical 15.6 kDa protein y4wH 32 0.37
2CH18_DROSU (P24514) Chorion protein S18 29 3.1
3PDLI2_MACFA (Q9GKU1) PDZ and LIM domain protein 2 29 3.1
4GCSP2_PSEPK (Q88CI9) Glycine dehydrogenase [decarboxylating] 2 (... 28 5.3
5YR848_MIMIV (Q5UP11) Putative ankyrin repeat protein R848 28 6.9
6TULP4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily pro... 27 9.0
7HEMH_CHICK (O42479) Ferrochelatase, mitochondrial precursor (EC ... 27 9.0
8ANFC_ACITR (Q76KW6) C-type natriuretic peptide precursor 27 9.0

>Y4WH_RHISN (P55686) Hypothetical 15.6 kDa protein y4wH|
          Length = 145

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 262 TNATCAFIQDYQNCMKHGRPSLDFLQWRWRPDGG 363
           ++ T AF   +    + G+P + FL++R RPDGG
Sbjct: 76  SDGTLAFADQHFTIDRDGKPVIQFLRYRIRPDGG 109



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>CH18_DROSU (P24514) Chorion protein S18|
          Length = 174

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +3

Query: 93  PPLPRSGHALAPLPRASPIAGHPLVVR 173
           PP+ R   ALA L  A+P AG PLV R
Sbjct: 95  PPVDREAIALAKLALAAPSAGGPLVWR 121



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>PDLI2_MACFA (Q9GKU1) PDZ and LIM domain protein 2|
          Length = 352

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +3

Query: 57  HCQDHTSFRSRCPP----LPRSGHALAPLPRASPIAGHPLVVR 173
           H + H+S RS         PR+G   +P P +SP+AG   + R
Sbjct: 111 HTESHSSLRSSYSSPTSLSPRAGSPFSPPPFSSPLAGEAAISR 153



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>GCSP2_PSEPK (Q88CI9) Glycine dehydrogenase [decarboxylating] 2 (EC 1.4.4.2)|
           (Glycine decarboxylase 2) (Glycine cleavage system
           P-protein 2)
          Length = 957

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 254 GSAPAGSRTH-SPSVVSHAVAPMPWVLPPDDEGVS 153
           G  P G R H  P V SH V P+P  L P++  VS
Sbjct: 719 GMGPIGIRAHLKPFVASHPVVPVPG-LDPNNSAVS 752



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>YR848_MIMIV (Q5UP11) Putative ankyrin repeat protein R848|
          Length = 262

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 232 RDPAGALPHYTNATCAFIQDYQNCMKHGRP 321
           ++    L  Y N  C  I  Y NC+KH  P
Sbjct: 233 KNKTAKLVEYMNIFCHIINKYDNCVKHLMP 262



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>TULP4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily protein)|
          Length = 1544

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +3

Query: 87  RCPPLPRSGHALAPLPRA---SPIAGHPLVVRRQYP 185
           + P LPR+   L+  PR     P  G P + RR++P
Sbjct: 551 KSPKLPRAAQELSRSPRLPLRKPSVGSPSLTRREFP 586



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>HEMH_CHICK (O42479) Ferrochelatase, mitochondrial precursor (EC 4.99.1.1)|
           (Protoheme ferro-lyase) (Heme synthetase)
          Length = 402

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 200 VAPMPWVLPPDDEGVSG 150
           V PMPW++P  DE + G
Sbjct: 284 VGPMPWLVPQTDETIKG 300



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>ANFC_ACITR (Q76KW6) C-type natriuretic peptide precursor|
          Length = 150

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = -1

Query: 380 ASSQPGPPSGRHLHCRKSRLGL 315
           A SQ  PPS R LH R  RLGL
Sbjct: 71  ALSQRAPPSIRALHPRSGRLGL 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,736,155
Number of Sequences: 219361
Number of extensions: 875377
Number of successful extensions: 3024
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3024
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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