ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart22e12 |
|---|---|
| Clone Library Name | barley_pub |
>LOLD_VIBCH (P57066) Lipoprotein-releasing system ATP-binding protein lolD| Length = 228 Score = 30.4 bits (67), Expect = 1.2 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 5/37 (13%) Frame = +3 Query: 147 PQAIMAEE-----GHKVALNVYDLSNGLARQLSTSFL 242 P ++A+E HK AL++YDL L R+ T+FL Sbjct: 163 PDLVLADEPTGNLDHKTALSIYDLMRELNRESGTAFL 199
>INVO_GALCR (P24710) Involucrin| Length = 384 Score = 30.4 bits (67), Expect = 1.2 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 11/77 (14%) Frame = -3 Query: 263 DGLDGLAEEGCGELARE---AVAQVVDVERHLVPLLRHYRLGNRREPRRFEPNLGEED-- 99 D + G+ E+ CG+ E Q V + + P LG + EP EP+LG+E Sbjct: 65 DPVKGVLEQECGQQEPELHLGKQQDVHLMKRQDPQEPELHLGKQPEPEGPEPHLGKEQQH 124 Query: 98 ------DAAAGKERQQE 66 + GK++QQE Sbjct: 125 QESQDPELHLGKQQQQE 141
>K0853_HUMAN (Q5T200) Protein KIAA0853| Length = 1668 Score = 30.4 bits (67), Expect = 1.2 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = -3 Query: 155 RLGNRREPRRFEPNLGEEDDAAAGKERQQEQGRTRARIWEKRAEQSRDR 9 R+ +RR+ R E + E D +ER++E+ R R + E E++R+R Sbjct: 667 RVDDRRDERARERDRERERDRERERERERERDREREKERELERERARER 715 Score = 28.1 bits (61), Expect = 6.1 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = -3 Query: 143 RREPRRFEPNLGEEDDAAAGKERQQEQGRTRARIWEKRAEQSRDR 9 R + R E E + KER +E+ R R E+ E+ RDR Sbjct: 701 REKERELERERAREREREREKERDRERDRDRDHDRERERERERDR 745 Score = 27.7 bits (60), Expect = 8.0 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -3 Query: 143 RREPRRFEPNLGEEDDAAAGKERQQEQGRTRARIWEKRAEQSRDR 9 R R E E D KER+ E+ R R R E+ E+ R+R Sbjct: 683 RERDRERERERERERDREREKERELERERAREREREREKERDRER 727
>ACINU_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in the nucleus| (Acinus) Length = 1341 Score = 30.4 bits (67), Expect = 1.2 Identities = 19/53 (35%), Positives = 28/53 (52%) Frame = -3 Query: 161 HYRLGNRREPRRFEPNLGEEDDAAAGKERQQEQGRTRARIWEKRAEQSRDRAS 3 H R +R R E + G+ D +ER +E+GR R R KR +SR R++ Sbjct: 1283 HSRERDRERERERERDRGDRD---RDRERDRERGRERDRRDTKRHSRSRSRST 1332 Score = 28.5 bits (62), Expect = 4.7 Identities = 17/44 (38%), Positives = 25/44 (56%) Frame = -3 Query: 140 REPRRFEPNLGEEDDAAAGKERQQEQGRTRARIWEKRAEQSRDR 9 RE RR E +E++ +E++ E+ R R EKR E SR+R Sbjct: 1248 REKRRKE----QEEEEQKEREKEAERERNRQLEREKRREHSRER 1287
>LOLD_VIBVY (Q7MJ01) Lipoprotein-releasing system ATP-binding protein lolD| Length = 227 Score = 29.6 bits (65), Expect = 2.1 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%) Frame = +3 Query: 147 PQAIMAEE-----GHKVALNVYDLSNGLARQLSTSFL 242 P ++A+E HK AL +YDL L R+ T+FL Sbjct: 163 PALVLADEPTGNLDHKTALQIYDLMRELNRESGTAFL 199
>LOLD_VIBVU (Q8DAV6) Lipoprotein-releasing system ATP-binding protein lolD| Length = 227 Score = 29.6 bits (65), Expect = 2.1 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%) Frame = +3 Query: 147 PQAIMAEE-----GHKVALNVYDLSNGLARQLSTSFL 242 P ++A+E HK AL +YDL L R+ T+FL Sbjct: 163 PALVLADEPTGNLDHKTALQIYDLMRELNRESGTAFL 199
>CALD1_HUMAN (Q05682) Caldesmon (CDM)| Length = 793 Score = 29.3 bits (64), Expect = 2.7 Identities = 25/78 (32%), Positives = 37/78 (47%) Frame = -3 Query: 242 EEGCGELAREAVAQVVDVERHLVPLLRHYRLGNRREPRRFEPNLGEEDDAAAGKERQQEQ 63 EE E A A++ ER + + ++ + R R E EE AA +ER++ + Sbjct: 258 EEEDKERAEAERARLEAEERERIKAEQDKKIADERA--RIE---AEEKAAAQERERREAE 312 Query: 62 GRTRARIWEKRAEQSRDR 9 R R R EKRA + R R Sbjct: 313 ERERMREEEKRAAEERQR 330
>DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) (Helicase of 117.4 kDa) Length = 1032 Score = 29.3 bits (64), Expect = 2.7 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Frame = -3 Query: 164 RHYRL--------GNRREPRRFEPNLGEEDDAAAGKERQQEQGRTRARIWEKRAEQSRDR 9 RHYR G+R R + D + R +++ R R+R +KR +SRDR Sbjct: 6 RHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRSRSRDR 65
>DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1032 Score = 29.3 bits (64), Expect = 2.7 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Frame = -3 Query: 164 RHYRL--------GNRREPRRFEPNLGEEDDAAAGKERQQEQGRTRARIWEKRAEQSRDR 9 RHYR G+R R + D + R +++ R R+R +KR +SRDR Sbjct: 6 RHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRSRSRDR 65
>DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1032 Score = 29.3 bits (64), Expect = 2.7 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Frame = -3 Query: 164 RHYRL--------GNRREPRRFEPNLGEEDDAAAGKERQQEQGRTRARIWEKRAEQSRDR 9 RHYR G+R R + D + R +++ R R+R +KR +SRDR Sbjct: 6 RHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRSRSRDR 65
>DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) (PRP5 homolog) Length = 1032 Score = 29.3 bits (64), Expect = 2.7 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Frame = -3 Query: 164 RHYRL--------GNRREPRRFEPNLGEEDDAAAGKERQQEQGRTRARIWEKRAEQSRDR 9 RHYR G+R R + D + R +++ R R+R +KR +SRDR Sbjct: 6 RHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRSRSRDR 65
>PHS_PELLD (Q3B6N5) Putative pterin-4-alpha-carbinolamine dehydratase (EC| 4.2.1.96) (PHS) (4-alpha-hydroxy-tetrahydropterin dehydratase) (Pterin carbinolamine dehydratase) (PCD) Length = 114 Score = 28.9 bits (63), Expect = 3.6 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Frame = -3 Query: 263 DGLDGLAEEGCGELAREAVAQVVDVERHLVPLLRHYRLGNRREPRRFEPNLGEEDDAAAG 84 +GL LAE EL +E V+ E + L+R + N RE F ++GE ++ Sbjct: 14 EGLPPLAERESEELLKEIPEWVIVSEDGVSRLVRTFTFENFREAMAFAGSVGELAESEQH 73 Query: 83 KER-QQEQGRTRARIW 39 + E G+ R W Sbjct: 74 HPKLVTEWGKVRVEWW 89
>RL4_STRAW (Q82DP4) 50S ribosomal protein L4| Length = 221 Score = 28.5 bits (62), Expect = 4.7 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 8/87 (9%) Frame = -3 Query: 257 LDGLAEEGCGELAREAVAQVVDVERHLVPLLRHY--------RLGNRREPRRFEPNLGEE 102 +D L+ G E A++ DVE+ +PLL R G + RR E G Sbjct: 4 IDILSPSGDNAGTVELPAEIFDVEKISIPLLHQVVVAQLAAARQGTHKVKRRGEVRGG-- 61 Query: 101 DDAAAGKERQQEQGRTRARIWEKRAEQ 21 GK+ +++G RAR RA Q Sbjct: 62 -----GKKPYRQKGTGRARQGSTRAPQ 83
>PACC_EMENI (Q00202) pH-response transcription factor pacC/RIM101| Length = 678 Score = 28.5 bits (62), Expect = 4.7 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = -3 Query: 227 ELAREAVAQVVDVER-HLVPLLRHYRLGNRREPRRFEPNLGEEDDAAAGKERQQEQGRTR 51 E+A + Q VE+ L+ LR+Y + NR E F + +E D ++++QEQ + Sbjct: 557 EVAERSDVQSEWVEKVRLIEYLRNY-IANRLERGEFSDDSEQEQDQEQEQDQEQEQDQ-- 613 Query: 50 ARIWEKRAEQSRDRAS 3 EQ +DR S Sbjct: 614 --------EQGQDRVS 621
>RPOD_BACHD (O66381) RNA polymerase sigma factor rpoD (Sigma-A) (Sigma-43)| Length = 372 Score = 28.5 bits (62), Expect = 4.7 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 2/74 (2%) Frame = -3 Query: 227 ELAREAVAQVVDVERHLVPLLRHYRLGNRREPRRFEPNLGEEDDAAAGK--ERQQEQGRT 54 +L RE + V E L P L +EP E +GEEDD+ G E Q + Sbjct: 233 DLGREPSPEEVAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDALAPS 292 Query: 53 RARIWEKRAEQSRD 12 A +E EQ D Sbjct: 293 DAAAYELLKEQLED 306
>ACINU_MOUSE (Q9JIX8) Apoptotic chromatin condensation inducer in the nucleus| (Acinus) Length = 1338 Score = 28.5 bits (62), Expect = 4.7 Identities = 18/56 (32%), Positives = 27/56 (48%) Frame = -3 Query: 170 LLRHYRLGNRREPRRFEPNLGEEDDAAAGKERQQEQGRTRARIWEKRAEQSRDRAS 3 L R R + RE R + D +ER +++GR R R KR +SR R++ Sbjct: 1274 LEREKRREHSRERERDRERERDRGDRERERERDRDRGRERDRRDTKRHSRSRSRST 1329 Score = 27.7 bits (60), Expect = 8.0 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = -3 Query: 140 REPRRFEPNLGEEDDAAAGKERQQEQGRTRARIWEKRAEQSRDR 9 RE RR E E++ +E++ E+ R R EKR E SR+R Sbjct: 1247 REKRRKE----REEEEQKEREKEAERERNRQLEREKRREHSRER 1286
>CD2L1_MOUSE (P24788) PITSLRE serine/threonine-protein kinase CDC2L1 (EC| 2.7.11.22) (Galactosyltransferase-associated protein kinase p58/GTA) (Cell division cycle 2-like protein kinase 1) Length = 784 Score = 28.5 bits (62), Expect = 4.7 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 5/51 (9%) Frame = -3 Query: 143 RREPRRFEPNL---GEEDDAAAGKERQQEQGRTRA--RIWEKRAEQSRDRA 6 R P R E ++ GEEDD+ A K QQ + +A R EKR E+ R R+ Sbjct: 63 RNSPYRREDSMEDRGEEDDSLAIKPPQQMSRKEKAHHRKDEKRKEKRRHRS 113
>RPOD_STAES (Q8CP24) RNA polymerase sigma factor rpoD| Length = 368 Score = 28.5 bits (62), Expect = 4.7 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Frame = -3 Query: 227 ELAREAVAQVVDVERHLVPLLRHYRLGNRREPRRFEPNLGEEDDAAAGK--ERQQEQGRT 54 +L R+ + + E L P L +EP E +GEEDD+ G E Q+ Q + Sbjct: 229 DLGRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPS 288 Query: 53 RARIWEKRAEQSRD 12 +E EQ D Sbjct: 289 DHAAYELLKEQLED 302
>RPOD_STAEQ (Q5HNY7) RNA polymerase sigma factor rpoD| Length = 368 Score = 28.5 bits (62), Expect = 4.7 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Frame = -3 Query: 227 ELAREAVAQVVDVERHLVPLLRHYRLGNRREPRRFEPNLGEEDDAAAGK--ERQQEQGRT 54 +L R+ + + E L P L +EP E +GEEDD+ G E Q+ Q + Sbjct: 229 DLGRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPS 288 Query: 53 RARIWEKRAEQSRD 12 +E EQ D Sbjct: 289 DHAAYELLKEQLED 302
>RPOD_LACLA (Q04506) RNA polymerase sigma factor rpoD (Sigma-42)| Length = 386 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = -3 Query: 227 ELAREAVAQVVDVERHLVPLLRHYRLGNRREPRRFEPNLGEEDDAAAG 84 EL R+ + + E H+ P L +EP E +GEEDD+ G Sbjct: 248 ELGRDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLG 295
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 28.1 bits (61), Expect = 6.1 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -3 Query: 101 DDAAAGKERQQEQGRTRARIWEKRAEQSRDRAS 3 DD+ AG+ R + R+R+R + +SR R+S Sbjct: 199 DDSQAGRSRSRSNSRSRSRSRSRDRRRSRSRSS 231
>CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-channel| [Contains: Glutamic acid-rich protein (GARP); Cyclic-nucleotide-gated cation channel 4 (CNG channel 4) (CNG-4) (Cyclic nucleotide-gated cation channel modulatory subunit)] Length = 1394 Score = 28.1 bits (61), Expect = 6.1 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = -3 Query: 137 EPRRFEPNLGEEDDAAAGKERQQEQGRTRARIWEKRAEQSRDR 9 E R E GEE + G+E+++E+G EK+ E+ R++ Sbjct: 373 EGREKEEEEGEEKEEEEGREKEEEEG-------EKKEEEGREK 408
>RPOD_LACLC (P58290) RNA polymerase sigma factor rpoD (Sigma-42) (Fragment)| Length = 364 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = -3 Query: 227 ELAREAVAQVVDVERHLVPLLRHYRLGNRREPRRFEPNLGEEDDAAAG 84 EL R+ + + E H+ P L +EP E +GEEDD+ G Sbjct: 226 ELGRDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLG 273
>RAD21_HUMAN (O60216) Double-strand-break repair protein rad21 homolog (hHR21)| (Nuclear matrix protein 1) (NXP-1) (SCC1 homolog) Length = 631 Score = 27.7 bits (60), Expect = 8.0 Identities = 16/53 (30%), Positives = 27/53 (50%) Frame = -3 Query: 179 LVPLLRHYRLGNRREPRRFEPNLGEEDDAAAGKERQQEQGRTRARIWEKRAEQ 21 L+P L + + + E + EED+ A+G ++ QE+ R W KR +Q Sbjct: 515 LIPELELLPEKEKEKEKEKEDDEEEEDEDASGGDQDQEERR-----WNKRTQQ 562
>SRCA_MOUSE (Q7TQ48) Sarcalumenin precursor| Length = 910 Score = 27.7 bits (60), Expect = 8.0 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -3 Query: 125 FEPNLGEEDDAAAGKERQQEQGRTRARIWEKRAEQSRD 12 FE + ++ +A A +ERQQE+G WE+ + S + Sbjct: 429 FEGSKTQDIEAEASEERQQERGNPVIAQWEEVEDASEE 466
>SNIP1_MOUSE (Q8BIZ6) Smad nuclear-interacting protein 1| Length = 383 Score = 27.7 bits (60), Expect = 8.0 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 4/32 (12%) Frame = +2 Query: 191 RLRPE----QRPRAPALHILPRQAHRGHLAHR 274 RL PE +RP APA + P A GH HR Sbjct: 31 RLSPEPVAHRRPDAPAASLSPPAAEPGHSGHR 62
>NMDE1_RAT (Q00959) Glutamate [NMDA] receptor subunit epsilon 1 precursor| (N-methyl D-aspartate receptor subtype 2A) (NR2A) (NMDAR2A) Length = 1464 Score = 27.7 bits (60), Expect = 8.0 Identities = 18/48 (37%), Positives = 20/48 (41%) Frame = +2 Query: 107 LQDSARISSALGDSPGDNXXXXXXXXXXRLRPEQRPRAPALHILPRQA 250 L+DS R S L D DN RL + P P H LP QA Sbjct: 1348 LEDSKRSKSLLPDHASDNPFLHTYGDDQRLVIGRCPSDPYKHSLPSQA 1395
>NMDE1_PANTR (Q5IS45) Glutamate [NMDA] receptor subunit epsilon 1 precursor| (N-methyl D-aspartate receptor subtype 2A) (NR2A) (NMDAR2A) Length = 1464 Score = 27.7 bits (60), Expect = 8.0 Identities = 18/48 (37%), Positives = 20/48 (41%) Frame = +2 Query: 107 LQDSARISSALGDSPGDNXXXXXXXXXXRLRPEQRPRAPALHILPRQA 250 L+DS R S L D DN RL + P P H LP QA Sbjct: 1348 LEDSKRSKSLLPDHTSDNPFLHSHRDDQRLVIGRCPSDPYKHSLPSQA 1395
>NMDE1_MOUSE (P35436) Glutamate [NMDA] receptor subunit epsilon 1 precursor| (N-methyl D-aspartate receptor subtype 2A) (NR2A) (NMDAR2A) Length = 1464 Score = 27.7 bits (60), Expect = 8.0 Identities = 18/48 (37%), Positives = 20/48 (41%) Frame = +2 Query: 107 LQDSARISSALGDSPGDNXXXXXXXXXXRLRPEQRPRAPALHILPRQA 250 L+DS R S L D DN RL + P P H LP QA Sbjct: 1348 LEDSKRSKSLLPDHTSDNPFLHTYGDDQRLVIGRCPSDPYKHSLPSQA 1395
>NMDE1_HUMAN (Q12879) Glutamate [NMDA] receptor subunit epsilon 1 precursor| (N-methyl D-aspartate receptor subtype 2A) (NR2A) (NMDAR2A) (hNR2A) Length = 1464 Score = 27.7 bits (60), Expect = 8.0 Identities = 18/48 (37%), Positives = 20/48 (41%) Frame = +2 Query: 107 LQDSARISSALGDSPGDNXXXXXXXXXXRLRPEQRPRAPALHILPRQA 250 L+DS R S L D DN RL + P P H LP QA Sbjct: 1348 LEDSKRSKSLLPDHTSDNPFLHSHRDDQRLVIGRCPSDPYKHSLPSQA 1395
>FTSK_LISIN (Q92BW9) DNA translocase ftsK| Length = 762 Score = 27.7 bits (60), Expect = 8.0 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -3 Query: 269 VPDGLDGLAEEGCGELAREAVAQVVDVERHLVPLL-RHYRLGNRREPR 129 +PD + + E EL EAV VV+++ V +L R +R+G R R Sbjct: 684 IPDDIPEVEGEVTDELYHEAVELVVEMQTASVSMLQRKFRIGYNRAAR 731
>OTC1_PSESH (Q02047) Ornithine carbamoyltransferase 1, phaseolotoxin-sensitive| (EC 2.1.3.3) (OTCase 1) (SOCT) Length = 305 Score = 27.7 bits (60), Expect = 8.0 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = -1 Query: 259 ASMGLPRKDVESWRARPLLRS*TLSATLCPSSAIIAWGIAESRGDSSRIL 110 AS+ L KDV P R +S L S +AW AE+R + + L Sbjct: 244 ASLDLAEKDVLFMHCLPAHRGEEISVDLLDDSRSVAWDQAENRLHAQKAL 293
>FTSK_LISMO (Q8Y7A3) DNA translocase ftsK| Length = 757 Score = 27.7 bits (60), Expect = 8.0 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -3 Query: 269 VPDGLDGLAEEGCGELAREAVAQVVDVERHLVPLL-RHYRLGNRREPR 129 +PD + + E EL EAV VV+++ V +L R +R+G R R Sbjct: 679 IPDDIPEVEGEVTDELYHEAVELVVEMQTASVSMLQRKFRIGYNRAAR 726
>VATB_CHLTR (O84309) V-type ATP synthase beta chain (EC 3.6.3.14) (V-type| ATPase subunit B) Length = 438 Score = 27.7 bits (60), Expect = 8.0 Identities = 12/38 (31%), Positives = 23/38 (60%) Frame = +3 Query: 153 AIMAEEGHKVALNVYDLSNGLARQLSTSFLGKPIEAIW 266 +++ + KV L V+ ++GL+ FLG+P+E I+ Sbjct: 42 SVLRFDARKVTLQVFGGTSGLSTGDKVIFLGRPMEVIY 79
>RS6_XENLA (P39017) 40S ribosomal protein S6| Length = 249 Score = 27.7 bits (60), Expect = 8.0 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 6/88 (6%) Frame = -3 Query: 248 LAEEG------CGELAREAVAQVVDVERHLVPLLRHYRLGNRREPRRFEPNLGEEDDAAA 87 LA+EG ++ R +V+ +R + L + N+ E + L + A Sbjct: 162 LAKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRSKEA- 220 Query: 86 GKERQQEQGRTRARIWEKRAEQSRDRAS 3 KE++QEQ R R+ RA S+ +S Sbjct: 221 -KEKRQEQIAKRRRLSSLRASTSKSESS 247 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,863,589 Number of Sequences: 219361 Number of extensions: 434002 Number of successful extensions: 2101 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 1966 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2082 length of database: 80,573,946 effective HSP length: 66 effective length of database: 66,096,120 effective search space used: 1586306880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
