ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart22e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY596547.1| Saccharum officinarum clone SCAGLR1043G02, comple... 165 9e-38
2ref|XM_468370.1| Oryza sativa (japonica cultivar-group), mRNA 135 8e-29
3ref|XM_507547.1| PREDICTED Oryza sativa (japonica cultivar-group... 135 8e-29
4ref|XM_507041.2| PREDICTED Oryza sativa (japonica cultivar-group... 135 8e-29
5dbj|AK104442.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 8e-29
6dbj|AK102943.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 8e-29
7dbj|AK060071.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 8e-29
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 115 8e-23
9dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic D... 115 8e-23
10dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic D... 115 8e-23
11ref|XM_468180.1| Oryza sativa (japonica cultivar-group), mRNA 111 1e-21
12dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic D... 107 2e-20
13dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
14dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
15ref|XM_550107.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.23
16dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.23
17dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.23
18dbj|AK062714.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.90
19ref|XM_482196.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.6
20ref|XM_482192.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.6
21ref|XM_476120.1| Oryza sativa (japonica cultivar-group), predic... 40 3.6
22ref|XM_467112.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.6
23gb|AC130732.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.6
24gb|AE009229.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 3.6
25emb|AL354709.15| Human DNA sequence from clone RP11-145E5 on chr... 40 3.6
26emb|AL133412.7| Human DNA sequence from clone RP11-78H18 on chro... 40 3.6
27emb|AL035469.7|HS46B1 Human DNA sequence from clone RP1-46B1 on ... 40 3.6
28gb|AE008747.1| Salmonella typhimurium LT2, section 51 of 220 of ... 40 3.6
29gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequ... 40 3.6
30gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 3.6
31dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
32dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
33dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.6
34gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 3.6
35dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
36dbj|AP004222.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
37dbj|AP003563.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
38dbj|AP004676.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
39dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 3.6
40dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
41dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
42dbj|AK109150.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.6
43dbj|AK072538.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.6
44gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 3.6
45gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 40 3.6
46emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 40 3.6
47emb|AL627269.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 3.6 
>gb|AY596547.1| Saccharum officinarum clone SCAGLR1043G02, complete sequence
          Length = 984

 Score =  165 bits (83), Expect = 9e-38
 Identities = 107/115 (93%)
 Strand = Plus / Plus

                                                                       
Query: 157 taatggcggaggaggggcacaaggtggcgctcaacgtctacgacctgagcaacggcctcg 216
           ||||||||||||||||| |||||||| |||| ||||| |||||||| |||||||||||||
Sbjct: 116 taatggcggaggaggggtacaaggtgacgctgaacgtgtacgacctcagcaacggcctcg 175

                                                                  
Query: 217 cgcgccagctctccacatccttcctcggcaagcccatcgaggccatctggcacac 271
           |||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 176 cgcggcagctgtccacctccttcctcggcaagcccatcgaggccatctggcacac 230
to top
>ref|XM_468370.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1099

 Score =  135 bits (68), Expect = 8e-29
 Identities = 101/112 (90%)
 Strand = Plus / Plus

                                                                       
Query: 157 taatggcggaggaggggcacaaggtggcgctcaacgtctacgacctgagcaacggcctcg 216
           ||||||||||||| ||| ||||||| |  || ||||| |||||||| |||||||||||||
Sbjct: 151 taatggcggaggaagggtacaaggttgttcttaacgtgtacgacctcagcaacggcctcg 210

                                                               
Query: 217 cgcgccagctctccacatccttcctcggcaagcccatcgaggccatctggca 268
           |||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 211 cgcggcagctctccacctccttcctcggcaagccaatcgaggccatctggca 262
to top
>ref|XM_507547.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0053L11.37
           mRNA
          Length = 1151

 Score =  135 bits (68), Expect = 8e-29
 Identities = 101/112 (90%)
 Strand = Plus / Plus

                                                                       
Query: 157 taatggcggaggaggggcacaaggtggcgctcaacgtctacgacctgagcaacggcctcg 216
           ||||||||||||| ||| ||||||| |  || ||||| |||||||| |||||||||||||
Sbjct: 129 taatggcggaggaagggtacaaggttgttcttaacgtgtacgacctcagcaacggcctcg 188

                                                               
Query: 217 cgcgccagctctccacatccttcctcggcaagcccatcgaggccatctggca 268
           |||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 189 cgcggcagctctccacctccttcctcggcaagccaatcgaggccatctggca 240
to top
>ref|XM_507041.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0053L11.37
           mRNA
          Length = 1218

 Score =  135 bits (68), Expect = 8e-29
 Identities = 101/112 (90%)
 Strand = Plus / Plus

                                                                       
Query: 157 taatggcggaggaggggcacaaggtggcgctcaacgtctacgacctgagcaacggcctcg 216
           ||||||||||||| ||| ||||||| |  || ||||| |||||||| |||||||||||||
Sbjct: 154 taatggcggaggaagggtacaaggttgttcttaacgtgtacgacctcagcaacggcctcg 213

                                                               
Query: 217 cgcgccagctctccacatccttcctcggcaagcccatcgaggccatctggca 268
           |||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 214 cgcggcagctctccacctccttcctcggcaagccaatcgaggccatctggca 265
to top
>dbj|AK104442.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B11, full
           insert sequence
          Length = 1151

 Score =  135 bits (68), Expect = 8e-29
 Identities = 101/112 (90%)
 Strand = Plus / Plus

                                                                       
Query: 157 taatggcggaggaggggcacaaggtggcgctcaacgtctacgacctgagcaacggcctcg 216
           ||||||||||||| ||| ||||||| |  || ||||| |||||||| |||||||||||||
Sbjct: 129 taatggcggaggaagggtacaaggttgttcttaacgtgtacgacctcagcaacggcctcg 188

                                                               
Query: 217 cgcgccagctctccacatccttcctcggcaagcccatcgaggccatctggca 268
           |||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 189 cgcggcagctctccacctccttcctcggcaagccaatcgaggccatctggca 240
to top
>dbj|AK102943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114L12, full
           insert sequence
          Length = 1099

 Score =  135 bits (68), Expect = 8e-29
 Identities = 101/112 (90%)
 Strand = Plus / Plus

                                                                       
Query: 157 taatggcggaggaggggcacaaggtggcgctcaacgtctacgacctgagcaacggcctcg 216
           ||||||||||||| ||| ||||||| |  || ||||| |||||||| |||||||||||||
Sbjct: 151 taatggcggaggaagggtacaaggttgttcttaacgtgtacgacctcagcaacggcctcg 210

                                                               
Query: 217 cgcgccagctctccacatccttcctcggcaagcccatcgaggccatctggca 268
           |||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 211 cgcggcagctctccacctccttcctcggcaagccaatcgaggccatctggca 262
to top
>dbj|AK060071.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A06, full
           insert sequence
          Length = 1218

 Score =  135 bits (68), Expect = 8e-29
 Identities = 101/112 (90%)
 Strand = Plus / Plus

                                                                       
Query: 157 taatggcggaggaggggcacaaggtggcgctcaacgtctacgacctgagcaacggcctcg 216
           ||||||||||||| ||| ||||||| |  || ||||| |||||||| |||||||||||||
Sbjct: 154 taatggcggaggaagggtacaaggttgttcttaacgtgtacgacctcagcaacggcctcg 213

                                                               
Query: 217 cgcgccagctctccacatccttcctcggcaagcccatcgaggccatctggca 268
           |||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 214 cgcggcagctctccacctccttcctcggcaagccaatcgaggccatctggca 265
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  115 bits (58), Expect = 8e-23
 Identities = 73/78 (93%)
 Strand = Plus / Minus

                                                                            
Query: 189      aacgtctacgacctgagcaacggcctcgcgcgccagctctccacatccttcctcggcaag 248
                ||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 34899199 aacgtgtacgacctcagcaacggcctcgcgcggcagctctccacctccttcctcggcaag 34899140

                                  
Query: 249      cccatcgaggccatctgg 266
                || |||||||||||||||
Sbjct: 34899139 ccaatcgaggccatctgg 34899122



 Score =  107 bits (54), Expect = 2e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                            
Query: 189      aacgtctacgacctgagcaacggcctcgcgcgccagctctccacatccttcctcggcaag 248
                ||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||| |||||
Sbjct: 33509375 aacgtgtacgacctgagcaacagcctcgcgcggcagctctccacctccttcctccgcaag 33509316

                                  
Query: 249      cccatcgaggccatctgg 266
                || |||||||||||||||
Sbjct: 33509315 ccaatcgaggccatctgg 33509298



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 185      gctcaacgtctacgacctga 204
                ||||||||||||||||||||
Sbjct: 26490224 gctcaacgtctacgacctga 26490243



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 92       cggcgtcgtcttcttctcca 111
                ||||||||||||||||||||
Sbjct: 21606638 cggcgtcgtcttcttctcca 21606657
to top
>dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0053L11
          Length = 147123

 Score =  115 bits (58), Expect = 8e-23
 Identities = 73/78 (93%)
 Strand = Plus / Minus

                                                                          
Query: 189    aacgtctacgacctgagcaacggcctcgcgcgccagctctccacatccttcctcggcaag 248
              ||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 120794 aacgtgtacgacctcagcaacggcctcgcgcggcagctctccacctccttcctcggcaag 120735

                                
Query: 249    cccatcgaggccatctgg 266
              || |||||||||||||||
Sbjct: 120734 ccaatcgaggccatctgg 120717
to top
>dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1293_E04
          Length = 118192

 Score =  115 bits (58), Expect = 8e-23
 Identities = 73/78 (93%)
 Strand = Plus / Minus

                                                                         
Query: 189   aacgtctacgacctgagcaacggcctcgcgcgccagctctccacatccttcctcggcaag 248
             ||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 58696 aacgtgtacgacctcagcaacggcctcgcgcggcagctctccacctccttcctcggcaag 58637

                               
Query: 249   cccatcgaggccatctgg 266
             || |||||||||||||||
Sbjct: 58636 ccaatcgaggccatctgg 58619
to top
>ref|XM_468180.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 228

 Score =  111 bits (56), Expect = 1e-21
 Identities = 74/80 (92%)
 Strand = Plus / Plus

                                                                       
Query: 189 aacgtctacgacctgagcaacggcctcgcgcgccagctctccacatccttcctcggcaag 248
           ||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||| |||||
Sbjct: 19  aacgtgtacgacctgagcaacagcctcgcgcggcagctctccacctccttcctccgcaag 78

                               
Query: 249 cccatcgaggccatctggca 268
           || |||||||||||||||||
Sbjct: 79  ccaatcgaggccatctggca 98
to top
>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0054K20
          Length = 153584

 Score =  107 bits (54), Expect = 2e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                         
Query: 189   aacgtctacgacctgagcaacggcctcgcgcgccagctctccacatccttcctcggcaag 248
             ||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||| |||||
Sbjct: 84250 aacgtgtacgacctgagcaacagcctcgcgcggcagctctccacctccttcctccgcaag 84191

                               
Query: 249   cccatcgaggccatctgg 266
             || |||||||||||||||
Sbjct: 84190 ccaatcgaggccatctgg 84173
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 76       cgttcctttccggcggcggcgtcgtcttc 104
                ||||||| |||||||||||||||||||||
Sbjct: 25939795 cgttcctctccggcggcggcgtcgtcttc 25939767
to top
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0017B12
          Length = 157424

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 76    cgttcctttccggcggcggcgtcgtcttc 104
             ||||||| |||||||||||||||||||||
Sbjct: 94893 cgttcctctccggcggcggcgtcgtcttc 94865
to top
>ref|XM_550107.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 891

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 85  ccggcggcggcgtcgtcttcttctcc 110
           ||||||||||| ||||||||||||||
Sbjct: 748 ccggcggcggcatcgtcttcttctcc 723
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 85      ccggcggcggcgtcgtcttcttctcc 110
               ||||||||||| ||||||||||||||
Sbjct: 2400088 ccggcggcggcatcgtcttcttctcc 2400113



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 81       ctttccggcggcggcgtcgt 100
                ||||||||||||||||||||
Sbjct: 18500886 ctttccggcggcggcgtcgt 18500867
to top
>dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0024G09
          Length = 175565

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 85     ccggcggcggcgtcgtcttcttctcc 110
              ||||||||||| ||||||||||||||
Sbjct: 129138 ccggcggcggcatcgtcttcttctcc 129163
to top
>dbj|AK062714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-C06, full
           insert sequence
          Length = 534

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 83  ttccggcggcggcgtcgtcttcttctcca 111
           |||||||||||||||||||| || |||||
Sbjct: 277 ttccggcggcggcgtcgtctcctcctcca 305
to top
>ref|XM_482196.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1146

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   ttccggcggcggcgtcgtct 102
            ||||||||||||||||||||
Sbjct: 1109 ttccggcggcggcgtcgtct 1128
to top
>ref|XM_482192.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1125

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   ttccggcggcggcgtcgtct 102
            ||||||||||||||||||||
Sbjct: 1088 ttccggcggcggcgtcgtct 1107
to top
>ref|XM_476120.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 675

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 86  cggcggcggcgtcgtcttct 105
           ||||||||||||||||||||
Sbjct: 664 cggcggcggcgtcgtcttct 645
to top
>ref|XM_467112.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1106

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 gctcaacgtctacgacctga 204
           ||||||||||||||||||||
Sbjct: 99  gctcaacgtctacgacctga 118
to top
>gb|AC130732.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0708D12,
             complete sequence
          Length = 172647

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    cggcggcggcgtcgtcttct 105
             ||||||||||||||||||||
Sbjct: 98147 cggcggcggcgtcgtcttct 98128
to top
>gb|AE009229.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 255
            of 256 of the complete sequence
          Length = 12291

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 171  gggcacaaggtggcgctcaa 190
            ||||||||||||||||||||
Sbjct: 4806 gggcacaaggtggcgctcaa 4825
to top
>emb|AL354709.15| Human DNA sequence from clone RP11-145E5 on chromosome 9 Contains the
             5' end of the CDKN2B gene for cyclin-dependent kinase
             inhibitor 2B (p15, inhibits CDK4), a ubiquitin A-52
             residue ribosomal protein fusion product 1 (UBA52) (RPL40)
             pseudogene, the 3' end of a variant of the MTAP gene for
             methylthioadenosine phosphorylase (MSAP), a novel gene and
             a CpG island, complete sequence
          Length = 157533

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   cagctctccacatccttcct 241
             ||||||||||||||||||||
Sbjct: 59195 cagctctccacatccttcct 59176
to top
>emb|AL133412.7| Human DNA sequence from clone RP11-78H18 on chromosome 9q22.1-22.33
             Contains the 5' end of the TNFSF15 gene for tumor necrosis
             factor (ligand) superfamily, member 15 (TL1, VEG1), a PRP4
             pre-mRNA processing factor 4 homolog B (PR4H, Prp4, PRP4H,
             PRP4K, KIAA0536) (PRPF4B) pseudogene and the TNFSF8 gene
             for tumor necrosis factor (ligand) superfamily, member 8
             (CD153, CD30L, CD30LG), complete sequence
          Length = 158717

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   ggaggaggggcacaaggtgg 183
             ||||||||||||||||||||
Sbjct: 22375 ggaggaggggcacaaggtgg 22394
to top
>emb|AL035469.7|HS46B1 Human DNA sequence from clone RP1-46B1 on chromosome 6q12, complete
             sequence
          Length = 158204

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   gccagctctccacatccttc 239
             ||||||||||||||||||||
Sbjct: 65169 gccagctctccacatccttc 65188
to top
>gb|AE008747.1| Salmonella typhimurium LT2, section 51 of 220 of the complete genome
          Length = 23306

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 37   tcccagatccgcgcgcgcgt 56
            ||||||||||||||||||||
Sbjct: 2757 tcccagatccgcgcgcgcgt 2738
to top
>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence
          Length = 642517

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    gcgtcgtcttcttctccaag 113
             ||||||||||||||||||||
Sbjct: 84152 gcgtcgtcttcttctccaag 84171
to top
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 171     gggcacaaggtggcgctcaa 190
               ||||||||||||||||||||
Sbjct: 2824640 gggcacaaggtggcgctcaa 2824659
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 83       ttccggcggcggcgtcgtct 102
                ||||||||||||||||||||
Sbjct: 18535256 ttccggcggcggcgtcgtct 18535237



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 83       ttccggcggcggcgtcgtct 102
                ||||||||||||||||||||
Sbjct: 18501801 ttccggcggcggcgtcgtct 18501782
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 86      cggcggcggcgtcgtcttct 105
               ||||||||||||||||||||
Sbjct: 6267792 cggcggcggcgtcgtcttct 6267773
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 208     acggcctcgcgcgccagctc 227
               ||||||||||||||||||||
Sbjct: 4273762 acggcctcgcgcgccagctc 4273743
to top
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 37      tcccagatccgcgcgcgcgt 56
               ||||||||||||||||||||
Sbjct: 1826561 tcccagatccgcgcgcgcgt 1826580
to top
>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0020D05
          Length = 158760

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    cggcgtcgtcttcttctcca 111
             ||||||||||||||||||||
Sbjct: 95588 cggcgtcgtcttcttctcca 95607
to top
>dbj|AP004222.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1003B09
          Length = 155263

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     ctttccggcggcggcgtcgt 100
              ||||||||||||||||||||
Sbjct: 124644 ctttccggcggcggcgtcgt 124625
to top
>dbj|AP003563.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1168H06
          Length = 185600

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     ctttccggcggcggcgtcgt 100
              ||||||||||||||||||||
Sbjct: 100103 ctttccggcggcggcgtcgt 100084
to top
>dbj|AP004676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1003_B06
          Length = 131956

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   gctcaacgtctacgacctga 204
             ||||||||||||||||||||
Sbjct: 90140 gctcaacgtctacgacctga 90159
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 209     cggcctcgcgcgccagctct 228
               ||||||||||||||||||||
Sbjct: 1089304 cggcctcgcgcgccagctct 1089285
to top
>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0519E06
          Length = 170634

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   gctcaacgtctacgacctga 204
             ||||||||||||||||||||
Sbjct: 32605 gctcaacgtctacgacctga 32624
to top
>dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0671F11
          Length = 159409

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     ttccggcggcggcgtcgtct 102
              ||||||||||||||||||||
Sbjct: 117279 ttccggcggcggcgtcgtct 117260



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    ttccggcggcggcgtcgtct 102
             ||||||||||||||||||||
Sbjct: 83824 ttccggcggcggcgtcgtct 83805
to top
>dbj|AK109150.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-F09, full
           insert sequence
          Length = 949

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 86  cggcggcggcgtcgtcttct 105
           ||||||||||||||||||||
Sbjct: 713 cggcggcggcgtcgtcttct 694
to top
>dbj|AK072538.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132B16, full
           insert sequence
          Length = 1106

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 gctcaacgtctacgacctga 204
           ||||||||||||||||||||
Sbjct: 99  gctcaacgtctacgacctga 118
to top
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 37      tcccagatccgcgcgcgcgt 56
               ||||||||||||||||||||
Sbjct: 1900015 tcccagatccgcgcgcgcgt 1900034
to top
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 37      tcccagatccgcgcgcgcgt 56
               ||||||||||||||||||||
Sbjct: 1152376 tcccagatccgcgcgcgcgt 1152357
to top
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    gctcaacgtctacgacctga 204
              ||||||||||||||||||||
Sbjct: 195888 gctcaacgtctacgacctga 195907
to top
>emb|AL627269.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
             complete chromosome; segment 5/20
          Length = 254050

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    tcccagatccgcgcgcgcgt 56
             ||||||||||||||||||||
Sbjct: 27798 tcccagatccgcgcgcgcgt 27779


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,597,728
Number of Sequences: 3902068
Number of extensions: 2597728
Number of successful extensions: 54239
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53419
Number of HSP's gapped (non-prelim): 820
length of query: 274
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 252
effective length of database: 17,147,199,772
effective search space: 4321094342544
effective search space used: 4321094342544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top