Clone Information

BLAST Search Result

Clone Name	bart22e03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	HMGYA_SOYBN (Q00423) HMG-Y-related protein A (SB16A protein)	51	2e-06
2	H12_ARATH (P26569) Histone H1.2	49	8e-06
3	H1_WHEAT (P27806) Histone H1	49	1e-05
4	H1_PEA (P08283) Histone H1 (PsH1b) (PsH1b-40)	47	5e-05
5	H1_LYCES (P37218) Histone H1	45	1e-04
6	H1_MAIZE (P23444) Histone H1	45	2e-04
7	H11_ARATH (P26568) Histone H1.1	45	2e-04
8	H1_EUPES (Q9M5W4) Histone H1	43	7e-04
9	H1_ASCIM (Q9UV33) Histone H1	39	0.008
10	H14_CAEEL (O17536) Histone H1.4 (Histone H1-like protein 4)	37	0.051
11	H1_ASHGO (Q75C22) Histone H1	36	0.067
12	H11_VOLCA (Q08864) Histone H1-I	36	0.088
13	H1_LYCPN (P40267) Histone H1	35	0.11
14	H1L_MYTTR (Q05831) Sperm-specific protein PHI-2B (PL-II*) (Sperm...	35	0.11
15	H12_VOLCA (Q08865) Histone H1-II	35	0.20
16	SYFB_SYNPX (Q7U6V9) Phenylalanyl-tRNA synthetase beta chain (EC ...	35	0.20
17	H15_CAEEL (O01833) Histone H1.5 (Histone H1-like protein 5)	35	0.20
18	H1L1_OSTED (Q86QH9) Sperm-specific H1/protamine-like protein typ...	35	0.20
19	H1D_STRPU (P15870) Histone H1-delta	34	0.26
20	H1A_OLILU (P82898) Histone H1A (Fragment)	34	0.33
21	IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2	33	0.44
22	H1L_MYTCA (P22974) Sperm-specific protein PHI-2B (PL-II*) (Sperm...	33	0.44
23	H1G_STRPU (P07796) Histone H1-gamma, late	33	0.74
24	H1_YEAST (P53551) Histone H1	33	0.74
25	AROA2_BURPS (P39915) 3-phosphoshikimate 1-carboxyvinyltransferas...	33	0.74
26	ARLY_HALMA (Q5UZ47) Argininosuccinate lyase (EC 4.3.2.1) (Argino...	32	0.97
27	H1_DICDI (P54671) Histone H1	32	0.97
28	JUND_RAT (P52909) Transcription factor jun-D	32	0.97
29	JUND_MOUSE (P15066) Transcription factor jun-D	32	0.97
30	H1X_CAEEL (Q18336) Histone H1.X (Histone H1-like protein 1)	32	1.3
31	H1_LYTPI (P06144) Late histone H1	32	1.3
32	RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 ...	31	2.2
33	KCNN2_MOUSE (P58390) Small conductance calcium-activated potassi...	31	2.2
34	CDX4_MOUSE (Q07424) Homeobox protein CDX-4 (Caudal-type homeobox...	31	2.2
35	SYA_SILPO (Q5LRU1) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-...	31	2.8
36	KCNN2_RAT (P70604) Small conductance calcium-activated potassium...	31	2.8
37	H1B_STRPU (P15869) Histone H1-beta, late embryonic	30	3.7
38	RFWD2_MOUSE (Q9R1A8) Ring finger and WD repeat domain protein 2 ...	30	3.7
39	H1O_CHITH (Q07134) Histone H1, orphon	30	3.7
40	H11_GLYSA (P40266) Histone H1-I	30	3.7
41	H11_GLYBA (P40263) Histone H1-I	30	3.7
42	ATM_MOUSE (Q62388) Serine-protein kinase ATM (EC 2.7.11.1) (Atax...	30	4.8
43	SYY_PROAC (Q6A7W0) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosin...	30	4.8
44	PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)	30	4.8
45	H11_CAEEL (P10771) Histone H1.1	30	4.8
46	H5_CAIMO (P06513) Histone H5	30	4.8
47	SYFB_SYNSC (Q3AJY9) Phenylalanyl-tRNA synthetase beta chain (EC ...	30	6.3
48	KHSE_RHILO (Q985W2) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)	29	8.2
49	H1E_CHIPA (P40262) Histone H1E	29	8.2
50	H13_GLYBA (P40265) Histone H1-III	29	8.2
51	YDM5_SCHPO (P87136) Hypothetical protein C57A7.05 in chromosome I	29	8.2
52	H1E_CHITE (P40278) Histone H1E	29	8.2
53	H10_RAT (P43278) Histone H1.0 (H1(0)) (Histone H1')	29	8.2
54	DAN1_YEAST (P47178) Cell wall protein DAN1 precursor (Covalently...	29	8.2

>HMGYA_SOYBN (Q00423) HMG-Y-related protein A (SB16A protein)|
          Length = 176

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 25/61 (40%), Positives = 43/61 (70%)
 Frame = +2

Query: 128 IPSYPEMIVEAIASLREPNGSSQAAIARRIEAAHGAGGDLPPSHPALVAAHLSRMSAAAE 307
           +P YPEMIV+ + +L EPNGS+++AI++ IE  +   G+LP +   ++ +HL++M  + E
Sbjct: 12  LPPYPEMIVKTLEALNEPNGSNKSAISKYIETTY---GELPDA--TVLGSHLNKMKDSGE 66

Query: 308 L 310
           L
Sbjct: 67  L 67

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>H12_ARATH (P26569) Histone H1.2|
          Length = 273

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 31/89 (34%), Positives = 48/89 (53%)
 Frame = +2

Query: 47  SRRATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQAAIARRIEAA 226
           S++ T A         ++P      +  P+Y EMI +AI +L+E  GSSQ AI + IE  
Sbjct: 35  SKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEK 94

Query: 227 HGAGGDLPPSHPALVAAHLSRMSAAAELV 313
           H +   LPP+   L+  +L R+ A+ +LV
Sbjct: 95  HKS---LPPTFRKLLLVNLKRLVASEKLV 120

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>H1_WHEAT (P27806) Histone H1|
          Length = 238

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 32/96 (33%), Positives = 49/96 (51%)
 Frame = +2

Query: 38  SQPSRRATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQAAIARRI 217
           ++P++    A    S+ G   PR        PSY EM+ EAIA+L+E +GSS  AI + I
Sbjct: 28  AKPAKAPKAAKAKKSTPGPKKPRVTP---AHPSYAEMVSEAIAALKERSGSSTIAIGKFI 84

Query: 218 EAAHGAGGDLPPSHPALVAAHLSRMSAAAELVAFAG 325
           E  H A   LP +   ++   + ++ AA +L    G
Sbjct: 85  EDKHKA--HLPANFRKILLTQIKKLVAAGKLTKVKG 118

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>H1_PEA (P08283) Histone H1 (PsH1b) (PsH1b-40)|
          Length = 265

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
 Frame = +2

Query: 77  TSSGGQSSPRAAS---DLAVIPSYPEMIVEAIASLREPNGSSQAAIARRIEAAHGAGGDL 247
           T     S P+ AS   + A  P+Y EMI +AI SL+E NGSSQ AIA+ IE        L
Sbjct: 42  TKKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQ---KQL 98

Query: 248 PPSHPALVAAHLSRMSAAAELVAFAG 325
           P +   L+  +L +  A+ +L+   G
Sbjct: 99  PANFKKLLLQNLKKNVASGKLIKVKG 124

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>H1_LYCES (P37218) Histone H1|
          Length = 287

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 30/93 (32%), Positives = 48/93 (51%)
 Frame = +2

Query: 35  DSQPSRRATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQAAIARR 214
           ++ P  ++ +A   T +   ++PR  S     P Y EMI +AI +L+E  GSSQ AI + 
Sbjct: 25  EANPPAKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKF 84

Query: 215 IEAAHGAGGDLPPSHPALVAAHLSRMSAAAELV 313
           IE    +   LP +   L+   L +  A+ +LV
Sbjct: 85  IEEKQKS---LPSNFKKLLLTQLKKFVASEKLV 114

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>H1_MAIZE (P23444) Histone H1|
          Length = 245

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 31/89 (34%), Positives = 45/89 (50%)
 Frame = +2

Query: 44  PSRRATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQAAIARRIEA 223
           P+  A  A  A +    +  + AS   +   Y EM+ EAI SL+E  GSS  AIA+ +E 
Sbjct: 23  PAAPAADANAAKAKKATAPKKRASPTHL--PYAEMVSEAITSLKERTGSSSYAIAKFVED 80

Query: 224 AHGAGGDLPPSHPALVAAHLSRMSAAAEL 310
            H A   LPP+   L+   L ++ A  +L
Sbjct: 81  KHKA--KLPPNFRKLLNVQLKKLVAGGKL 107

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>H11_ARATH (P26568) Histone H1.1|
          Length = 274

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 26/61 (42%), Positives = 38/61 (62%)
 Frame = +2

Query: 131 PSYPEMIVEAIASLREPNGSSQAAIARRIEAAHGAGGDLPPSHPALVAAHLSRMSAAAEL 310
           P+Y EMI +AI +L+E  GSSQ AI + IE       +LPP+   L+  +L R+ A+ +L
Sbjct: 63  PTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKR---KELPPTFRKLLLLNLKRLVASGKL 119

Query: 311 V 313
           V
Sbjct: 120 V 120

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>H1_EUPES (Q9M5W4) Histone H1|
          Length = 229

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 25/61 (40%), Positives = 38/61 (62%)
 Frame = +2

Query: 131 PSYPEMIVEAIASLREPNGSSQAAIARRIEAAHGAGGDLPPSHPALVAAHLSRMSAAAEL 310
           PS+ EMI +AI++L+E  GSSQ AI + +E  H     LP +   L+  HL ++ A+ +L
Sbjct: 52  PSFFEMISDAISTLKERTGSSQYAINKFVEDKH---KQLPSNFRKLLLFHLKKLVASGKL 108

Query: 311 V 313
           V
Sbjct: 109 V 109

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>H1_ASCIM (Q9UV33) Histone H1|
          Length = 213

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 20/56 (35%), Positives = 33/56 (58%)
 Frame = +2

Query: 56  ATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQAAIARRIEA 223
           A  A  A +   +++P+  +     PSY EM+ +AI  L+E NGSS+ AI + I++
Sbjct: 3   AATASAAATPAKKAAPKKPAAAPEHPSYKEMLTKAITELKERNGSSRQAIKKFIQS 58

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>H14_CAEEL (O17536) Histone H1.4 (Histone H1-like protein 4)|
          Length = 252

 Score = 36.6 bits (83), Expect = 0.051
 Identities = 21/62 (33%), Positives = 34/62 (54%)
 Frame = +2

Query: 53  RATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQAAIARRIEAAHG 232
           +AT+A  AT +     P   +D A  P +  M+ EAI+S+++  G S+AAI + I   + 
Sbjct: 27  KATKASKATKAKTTKVPMVKAD-AAHPPFINMVTEAISSIKDRKGPSRAAILKYITTKYT 85

Query: 233 AG 238
            G
Sbjct: 86  LG 87

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>H1_ASHGO (Q75C22) Histone H1|
          Length = 225

 Score = 36.2 bits (82), Expect = 0.067
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 68  GMATSSG--GQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQAAIARRIEAAHGAG 238
           G   +SG  G+         A +P Y ++IVEA+ SL E  GSS+ AI + I   +  G
Sbjct: 2   GPKATSGTRGRGKKVGTKTAAPLPKYKDLIVEAVVSLAERGGSSRQAIKKFIRDKYAVG 60

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>H11_VOLCA (Q08864) Histone H1-I|
          Length = 260

 Score = 35.8 bits (81), Expect = 0.088
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +2

Query: 14  RTRARERDSQPSRRATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSS 193
           + +A +  +    +A +A     +  +  P+AA      P Y EM+ +AI +L+E NGSS
Sbjct: 23  KAKAPKAKAPKQPKAPKAPKEPKAPKEKKPKAAP---THPPYIEMVKDAITTLKERNGSS 79

Query: 194 QAAIARRIEAAHG 232
             A+ + IE  +G
Sbjct: 80  LPALKKFIENKYG 92

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>H1_LYCPN (P40267) Histone H1|
          Length = 202

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 20/61 (32%), Positives = 33/61 (54%)
 Frame = +2

Query: 131 PSYPEMIVEAIASLREPNGSSQAAIARRIEAAHGAGGDLPPSHPALVAAHLSRMSAAAEL 310
           P Y +MI EA+ +L E  GSS  A+A+ +E  H    +LP +   ++   L   +A  +L
Sbjct: 50  PPYFQMIKEALLALNEKGGSSPYAVAKYMEDKH--KDELPANFRKILGLQLKNSAAKGKL 107

Query: 311 V 313
           +
Sbjct: 108 I 108

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>H1L_MYTTR (Q05831) Sperm-specific protein PHI-2B (PL-II*) (Sperm-specific|
           linker histone H1-like protein) [Contains:
           Sperm-specific protein PHI-3 (Protamine-like protein
           PHI-3) (PL-IV)]
          Length = 202

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 26/71 (36%), Positives = 34/71 (47%)
 Frame = +2

Query: 11  SRTRARERDSQPSRRATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGS 190
           SR+R+R R   P R   +    T       PRAA  +   PS   MIV AI +++   GS
Sbjct: 7   SRSRSRSRSKSPKRSPAKKARKTPK----KPRAAGGVKK-PSTLSMIVAAITAMKNRKGS 61

Query: 191 SQAAIARRIEA 223
           S  AI + I A
Sbjct: 62  SVQAIRKYILA 72

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>H12_VOLCA (Q08865) Histone H1-II|
          Length = 240

 Score = 34.7 bits (78), Expect = 0.20
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +2

Query: 131 PSYPEMIVEAIASLREPNGSSQAAIARRIEAAHG 232
           P Y +M+ +AI SL+E +GSS  A+ + IEA +G
Sbjct: 25  PPYIQMVTDAILSLKERDGSSLPALKKFIEAKYG 58

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>SYFB_SYNPX (Q7U6V9) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 814

 Score = 34.7 bits (78), Expect = 0.20
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
 Frame = +2

Query: 59  TQAGMATSSGGQSSPRAASD--------LAVIPSYPEMIVEAIASLREPNGSSQAAIARR 214
           ++ G+AT S G +   A +D        +A +    + ++E   +   P+G S   IAR 
Sbjct: 124 SELGLATESDGIAELDALTDELPALGAPVAPMLGLDDTVLELAITANRPDGLSMVGIARE 183

Query: 215 IEAAHGAGGDLP-----PSHPALVAAHLSRMSAAAELVAFAGGKYAL 340
           + A  G+   LP     P+H  L A      SAA+     AGG Y +
Sbjct: 184 VAALTGSALTLPVLTLKPAHELLQA------SAASAEAMQAGGLYGI 224

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>H15_CAEEL (O01833) Histone H1.5 (Histone H1-like protein 5)|
          Length = 224

 Score = 34.7 bits (78), Expect = 0.20
 Identities = 22/73 (30%), Positives = 39/73 (53%)
 Frame = +2

Query: 59  TQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQAAIARRIEAAHGAG 238
           T+A  AT +     P+    +A  P +  MI EA+++L++  GSS+ AI + I A +  G
Sbjct: 15  TKASKATKAKATKIPKVKV-VAAHPPFINMITEAVSNLKDRKGSSRVAIFKFITAKYTLG 73

Query: 239 GDLPPSHPALVAA 277
             +  ++  L +A
Sbjct: 74  DQVNKTNAHLRSA 86

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>H1L1_OSTED (Q86QH9) Sperm-specific H1/protamine-like protein type 1 precursor|
           [Contains: Sperm-specific protein OE1 (Sperm-specific
           linker histone H1-like protein OE1); Sperm-specific
           protein OE3 (Protamine-like OS3)]
          Length = 202

 Score = 34.7 bits (78), Expect = 0.20
 Identities = 26/71 (36%), Positives = 34/71 (47%)
 Frame = +2

Query: 11  SRTRARERDSQPSRRATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGS 190
           SR+R+R R   P R   +    T       PRAA   A  P+   MIV AI +++   GS
Sbjct: 8   SRSRSRSRSKSPKRSPAKKARKTPK----KPRAAGG-AKKPTTLSMIVAAITAMKNRKGS 62

Query: 191 SQAAIARRIEA 223
           S  AI + I A
Sbjct: 63  SVQAIRKYILA 73

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>H1D_STRPU (P15870) Histone H1-delta|
          Length = 185

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = +2

Query: 29  ERDSQPSRRATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQAAIA 208
           + D+ P+  A       +    S P+     A  P Y +MI  A+ SL+E  GSS+ AI 
Sbjct: 3   DTDAAPAAPAPSTPKKAAKKKASKPKTP---ASHPKYSDMIASALESLKEKKGSSRQAIL 59

Query: 209 RRIEAAHGAG 238
           + ++A    G
Sbjct: 60  KYVKANFTVG 69

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>H1A_OLILU (P82898) Histone H1A (Fragment)|
          Length = 47

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = +2

Query: 131 PSYPEMIVEAIASLREPNGSSQAAIARRIEA 223
           P+Y +M+ +AI +L++ NGSS  AI + IEA
Sbjct: 1   PTYYDMVKDAIVALKDRNGSSMQAIKKYIEA 31

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>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2|
          Length = 954

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = +2

Query: 53  RATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQAAIARRIEAAHG 232
           R   AG     GG+SS    + LA    Y E+    I  +R PNG+ Q    R+  +   
Sbjct: 310 RGGAAGAFGRQGGKSSKARKNRLAKRHEYEELKAPTIGGVRIPNGNGQTIRLRQGASLAD 369

Query: 233 AGGDLPPSHPALVAA--HLSRMSAAAE 307
               +  +  ALV    HL +M+ A +
Sbjct: 370 LAEKINVNQAALVTVLFHLGQMATATQ 396

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>H1L_MYTCA (P22974) Sperm-specific protein PHI-2B (PL-II*) (Sperm-specific|
           linker histone H1-like protein)
          Length = 148

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 25/71 (35%), Positives = 33/71 (46%)
 Frame = +2

Query: 11  SRTRARERDSQPSRRATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGS 190
           SR+R+R R   P R   +    T        R A+  A  PS   MIV AI +++   GS
Sbjct: 7   SRSRSRSRSKSPKRSPAKKARKTPK-----KRRATGGAKKPSTLSMIVAAIQAMKNRKGS 61

Query: 191 SQAAIARRIEA 223
           S  AI + I A
Sbjct: 62  SVQAIRKYILA 72

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>H1G_STRPU (P07796) Histone H1-gamma, late|
          Length = 217

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 95  SSPRAASDLAVIPSYP---EMIVEAIASLREPNGSSQAAIARRIEA 223
           + P+ A    V P++P   +M+V A+ +L+E  GSS  AI + I A
Sbjct: 4   AKPKVAKKARVAPAHPPSSQMVVAAVTALKERGGSSTQAIKKYIAA 49

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>H1_YEAST (P53551) Histone H1|
          Length = 258

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +2

Query: 11  SRTRARERDSQPSRRATQAGM--ATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPN 184
           S T+   +  +P   AT  G   +TS        A  + A   SY E+I+E + +L+E  
Sbjct: 6   STTKTTSKGKKP---ATSKGKEKSTSKAAIKKTTAKKEEASSKSYRELIIEGLTALKERK 62

Query: 185 GSSQAAIARRIE 220
           GSS+ A+ + I+
Sbjct: 63  GSSRPALKKFIK 74

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>AROA2_BURPS (P39915) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)|
           (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
           synthase) (EPSPS)
          Length = 463

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = +2

Query: 11  SRTRARERDSQPSRRATQAGMATSSGGQSSPRAASDLA--VIPSYPEMIVEAIASLREPN 184
           +R R   R +         G A    G    R  ++L+  V+ S PE+   AI +LR P+
Sbjct: 365 ARCRRDSRMAMCFSLPAHGGRAVRHPGSRLHRQDAELSSKVVRSVPEVWGMAITALRCPS 424

Query: 185 GSSQAAIARRIEAAHGAGGDLPPSHPALVAA 277
           G +  A+A R E+  G  GD+    P L AA
Sbjct: 425 GGALRAMA-RFESMTGQRGDVVSQLPLLGAA 454

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>ARLY_HALMA (Q5UZ47) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 499

 Score = 32.3 bits (72), Expect = 0.97
 Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
 Frame = +2

Query: 8   HSRTRARERDSQPSRRATQAGMAT----SSGGQSSPRAASDLAVIPSYPEMIVEAIASLR 175
           H    A +RD    RR   AG       SS        A+DLAV  ++  M+ E     R
Sbjct: 7   HETANADDRDETVVRRDRFAGGPARSFLSSLSDDERIFAADLAVDRAHVVMLAEREIIDR 66

Query: 176 EPNGSSQAAIARRIEAAHGAGGDLPPSHPALVAAHLSRM 292
           E  G   AA+A   +A H A  D    H A+ +A + R+
Sbjct: 67  ETAGDVLAALADVEDAGHDALPDGEDVHEAIESAVIERV 105

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>H1_DICDI (P54671) Histone H1|
          Length = 179

 Score = 32.3 bits (72), Expect = 0.97
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +2

Query: 131 PSYPEMIVEAIASLREPNGSSQAAIARRIEAAHGAGGD 244
           P+Y  MI  AIA  ++  GSSQ AI + IEA +    D
Sbjct: 24  PTYQVMISTAIAHYKDRTGSSQPAIIKYIEANYNVAPD 61

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>JUND_RAT (P52909) Transcription factor jun-D|
          Length = 341

 Score = 32.3 bits (72), Expect = 0.97
 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
 Frame = +2

Query: 53  RATQAGMATSS-GGQSSPRAASDLAVIPSYPEMIVEAIAS-----LREPNGSSQAAIARR 214
           + +Q G AT++  G  +P A +DLA  P   E  V A  S        P G++  A A  
Sbjct: 149 KQSQLGAATAATSGAPAPPAPADLAATPGATETPVYANLSSFAGGAGPPGGAATVAFAAE 208

Query: 215 ---IEAAHGAGGDLPPSHPALVAA 277
                   GA G  PP HP  +AA
Sbjct: 209 PVPFPPPPGALGPPPPPHPPRLAA 232

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>JUND_MOUSE (P15066) Transcription factor jun-D|
          Length = 341

 Score = 32.3 bits (72), Expect = 0.97
 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
 Frame = +2

Query: 53  RATQAGMATSS-GGQSSPRAASDLAVIPSYPEMIVEAIAS-----LREPNGSSQAAIARR 214
           + +Q G AT++  G  +P A +DLA  P   E  V A  S        P G++  A A  
Sbjct: 149 KQSQLGAATAATSGAPAPPAPADLAATPGATETPVYANLSSFAGGAGPPGGAATVAFAAE 208

Query: 215 ---IEAAHGAGGDLPPSHPALVAA 277
                   GA G  PP HP  +AA
Sbjct: 209 PVPFPPPPGALGPPPPPHPPRLAA 232

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>H1X_CAEEL (Q18336) Histone H1.X (Histone H1-like protein 1)|
          Length = 232

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +2

Query: 131 PSYPEMIVEAIASLREPNGSSQAAIARRIEAAHGAGGDLP 250
           PSY +MI  AI ++    GSS+AAI + I   +  G +LP
Sbjct: 38  PSYMDMIKGAIQAIDNGTGSSKAAILKYIAQNYHVGENLP 77

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>H1_LYTPI (P06144) Late histone H1|
          Length = 210

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 95  SSPRAASDLAVIPSYP---EMIVEAIASLREPNGSSQAAIARRIEA 223
           + P+ A      P++P   +M+V AI +L+E  GSS  AI + I A
Sbjct: 4   AKPKTAKKARAAPAHPPTSQMVVAAITALKERGGSSNQAIKKYIAA 49

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>RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)|
           (Ubiquitin-protein ligase COP1) (Constitutive
           photomorphogenesis protein 1 homolog) (hCOP1)
          Length = 731

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 36/109 (33%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
 Frame = +2

Query: 47  SRRATQAGMATSSGGQSSPR---AASDLAVIPSYPEMIVEAIASLREPNGSSQAAIARRI 217
           SR+A      TS G  ++     A+S L+  PS P + V A A +    G +QAA     
Sbjct: 4   SRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSVAVSAAALVS--GGVAQAA----- 56

Query: 218 EAAHGAGGDLPPSHPALVA------------AHLSRMSAAAELVAFAGG 328
               G+GG   P  P LVA              LSR S AA   A  GG
Sbjct: 57  ----GSGGLGGPVRPVLVAPAVSGSGGGAVSTGLSRHSCAARPSAGVGG 101

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>KCNN2_MOUSE (P58390) Small conductance calcium-activated potassium channel|
           protein 2 (SK2)
          Length = 574

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 26/77 (33%), Positives = 35/77 (45%)
 Frame = +2

Query: 11  SRTRARERDSQPSRRATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGS 190
           SR   +E DS+       A +    GG SSP AA+  A   S PE++V    S  E N S
Sbjct: 20  SRRNLQEMDSEAQPLQPPASVVGGGGGASSPSAAA--AASSSAPEIVV----SKPEHNNS 73

Query: 191 SQAAIARRIEAAHGAGG 241
           +  A+       +G GG
Sbjct: 74  NNLAL-------YGTGG 83

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>CDX4_MOUSE (Q07424) Homeobox protein CDX-4 (Caudal-type homeobox protein 4)|
          Length = 282

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 56  ATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQAA 202
           ++ AG+ TS GG  SP  AS+    P YP  +     S  +P+G S  A
Sbjct: 24  SSTAGVGTS-GGSGSPLPASNFTAAPVYPHYVGYPHMSNMDPHGPSLGA 71

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>SYA_SILPO (Q5LRU1) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
            (AlaRS)
          Length = 890

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 25/108 (23%)
 Frame = +2

Query: 92   QSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQAAIA---RRIEAAHGAG-------- 238
            Q   R +   A++ + P  + E + +L +   + Q  +A   R +  A GAG        
Sbjct: 723  QEGARLSQVTAMLKAQPAEVAERVRALMDERKALQNEVAQLRRDLAMAGGAGQGGGAETH 782

Query: 239  --GDLP-----------PSHPALVAAHLSRM-SAAAELVAFAGGKYAL 340
              G +P              PAL+  H SRM S A  L+A AGGK A+
Sbjct: 783  EVGGVPFLAQVLSGVSGKDLPALIDEHKSRMGSGAVLLIADAGGKAAV 830

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>KCNN2_RAT (P70604) Small conductance calcium-activated potassium channel|
           protein 2 (SK2)
          Length = 580

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 26/77 (33%), Positives = 34/77 (44%)
 Frame = +2

Query: 11  SRTRARERDSQPSRRATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGS 190
           SR    E DS+       A +    GG SSP AA+  A   S PE++V    S  E N S
Sbjct: 20  SRRNLHEMDSEAQPLQPPASVVGGGGGASSPSAAA--AASSSAPEIVV----SKPEHNNS 73

Query: 191 SQAAIARRIEAAHGAGG 241
           +  A+       +G GG
Sbjct: 74  NNLAL-------YGTGG 83

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>H1B_STRPU (P15869) Histone H1-beta, late embryonic|
          Length = 211

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +2

Query: 131 PSYPEMIVEAIASLREPNGSSQAAIARRIE 220
           PS  EM++ AI +L+E  GSS  AI + IE
Sbjct: 19  PSSSEMVLAAITALKERGGSSAQAIRKYIE 48

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>RFWD2_MOUSE (Q9R1A8) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)|
           (Ubiquitin-protein ligase COP1) (Constitutive
           photomorphogenesis protein 1 homolog) (mCOP1)
          Length = 733

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
 Frame = +2

Query: 47  SRRATQAGMATSSGGQSSPR---AASDLAVIPSYPEMIVEAIASLREPNGSSQAAIARRI 217
           SR+A      TS G  ++     A+S L+  PS P +             S+   ++  +
Sbjct: 4   SRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSVAA-----------SAATLVSGGV 52

Query: 218 EAAHGAGGDLPPSHPALVAAHLSRMSAAAELVA 316
             A G+GG   P  P LVAA +S  ++A   V+
Sbjct: 53  APAAGSGGLGGPGRPVLVAAAVSGSASAGGAVS 85

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>H1O_CHITH (Q07134) Histone H1, orphon|
          Length = 244

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +2

Query: 38  SQPSRRATQAGMATSSGGQSSPRAASDLA--VIPSYP---EMIVEAIASLREPNGSSQAA 202
           S P  +  +A  A  S     P++       V P++P   EM+V A+ +L+E  GSS  A
Sbjct: 19  SPPKGKKEKAPKAPKSPKAEKPKSDKPKKPKVAPTHPPVSEMVVNAVTTLKERGGSSLIA 78

Query: 203 IARRIEAAH 229
           I + + A +
Sbjct: 79  IKKFVAAQY 87

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>H11_GLYSA (P40266) Histone H1-I|
          Length = 233

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 89  GQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQAAIARRIEAAH 229
           G   P+    +   P   EM+V A+ +L E  GSS  AI + + A +
Sbjct: 39  GSDKPKKPKAIPTHPPVSEMVVNALKTLNEKGGSSVIAIKKFLVATY 85

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>H11_GLYBA (P40263) Histone H1-I|
          Length = 233

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 89  GQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQAAIARRIEAAH 229
           G   P+    +   P   EM+V A+ +L E  GSS  AI + + A +
Sbjct: 39  GSDKPKKPKAIPTHPPVSEMVVNALKTLNEKGGSSVIAIKKFLVATY 85

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>ATM_MOUSE (Q62388) Serine-protein kinase ATM (EC 2.7.11.1) (Ataxia|
            telangiectasia mutated homolog) (A-T, mutated homolog)
          Length = 3066

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
 Frame = +2

Query: 32   RDSQPS-RRATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQAAIA 208
            RDS  S +R T   +  +  G+       D   I + PE++VE + +L E   S+ +  +
Sbjct: 1307 RDSYVSQKRETATKVYDTLKGEDFLGKQIDQVFISNLPEIVVELLMTLHETADSADSDAS 1366

Query: 209  RRIEAAHGAGGDLPPS-HPALVAAHLSRMSAA 301
            +   A     GDL P+ +P    +H+ + + A
Sbjct: 1367 QSATALCDFSGDLDPAPNPPYFPSHVIQATFA 1398

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>SYY_PROAC (Q6A7W0) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA|
           ligase) (TyrRS)
          Length = 418

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
 Frame = +2

Query: 23  ARERDSQPSRRATQAGMA---TSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSS 193
           AR+ + +P RRA Q  +A   T        R A++ A         +     LR+ +  +
Sbjct: 280 ARKTEEEPWRRAAQHCLADDLTDLVHGVEQRKAAEAAA------QAIFGRGELRDLDERT 333

Query: 194 QAAIARRIEAAHGAGGDLPPSHPALVAAHLSRMSAAAELVAFAGGKY 334
             +++  + AAH  GG+ P    A+VAA +    +        GG Y
Sbjct: 334 VLSLSDELGAAHHEGGEYPTVVGAMVAAGVVDTKSGGRRAVAEGGAY 380

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>PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)|
          Length = 939

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
 Frame = +2

Query: 20  RARERDSQPSRRATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQA 199
           R R   +  + R   A  A ++   ++P A SD         ++        +P G +Q 
Sbjct: 36  RLRASQTSDAPRVAAAAAAAAAAASAAPSAPSD--------RLLFSRRGQGADPGGKAQD 87

Query: 200 AIAR--------RIEAAHGAGGDLP 250
           A  R        R+EAA GAG D P
Sbjct: 88  AQPRPDVARADPRLEAASGAGADSP 112

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>H11_CAEEL (P10771) Histone H1.1|
          Length = 207

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 28/94 (29%), Positives = 41/94 (43%)
 Frame = +2

Query: 44  PSRRATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQAAIARRIEA 223
           P  +A +A   T      +P A       P Y  MI EAI  L++  G+S+ AI + I  
Sbjct: 15  PKAKAAKAAKPTKVAKAKAPVAH------PPYINMIKEAIKQLKDRKGASKQAILKFISQ 68

Query: 224 AHGAGGDLPPSHPALVAAHLSRMSAAAELVAFAG 325
            +  G ++   +  L  A L R   +  LV  AG
Sbjct: 69  NYKLGDNVIQINAHLRQA-LKRGVTSKALVQAAG 101

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>H5_CAIMO (P06513) Histone H5|
          Length = 193

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 131 PSYPEMIVEAIASLREPNGSSQAAIARRIEAAHGAG 238
           PSY EMIV AI + +   GSS+ +I + +++ +  G
Sbjct: 27  PSYSEMIVAAIRAEKSRGGSSRQSIQKYVKSHYKVG 62

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>SYFB_SYNSC (Q3AJY9) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 807

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
 Frame = +2

Query: 59  TQAGMATSSGG--------QSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQAAIARR 214
           T+ G+   S G        +S P   S +A +    + ++E   +   P+G S   IAR 
Sbjct: 124 TELGLTEQSDGIAILDELDESLPPNGSPVAPLLGLDDTVLELAITANRPDGLSMVGIARE 183

Query: 215 IEAAHGAGGDLP 250
           + A  G    LP
Sbjct: 184 VAALTGGSLSLP 195

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>KHSE_RHILO (Q985W2) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 320

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 113 SDLAVIPSYPEMIVEAIA--SLREPNGSSQAAIARRIEAAHGAGGDLPPSHPALVA 274
           S +  +   P +I+  +   SLR P  +  A + + + A H AG D P + P  +A
Sbjct: 89  SVIGTLAGRPAVIITFLEGLSLRRPTATHCAEVGKALAALHLAGADFPMTRPNALA 144

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>H1E_CHIPA (P40262) Histone H1E|
          Length = 235

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +2

Query: 38  SQPSRRATQAGMATSSGGQSSPRAASDLAVIPSYP---EMIVEAIASLREPNGSSQAAIA 208
           S P  +  +A  A  +    S +     A  P++P   EM+V AI +L+E  GSS  AI 
Sbjct: 19  SSPKGKKEKAPKAPKAEKPKSDKPKKPKAA-PTHPPVSEMVVNAITTLKERGGSSLIAIK 77

Query: 209 RRIEAAH 229
           + + A +
Sbjct: 78  KFVAAQY 84

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>H13_GLYBA (P40265) Histone H1-III|
          Length = 228

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 101 PRAASDLAVIPSYPEMIVEAIASLREPNGSSQAAIARRIEAAH 229
           P+ A      P   EM+V AI +L+E  GSS  AI + + A +
Sbjct: 31  PKKAKAPRTHPPVSEMVVNAIKTLKERGGSSLQAIKKFLAAQY 73

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>YDM5_SCHPO (P87136) Hypothetical protein C57A7.05 in chromosome I|
          Length = 1337

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = +2

Query: 14  RTRARERDSQPSRRATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSS 193
           +  AR+   QPS     +  ++SS  QSS  +      IPS  +  ++  +  R+P+  S
Sbjct: 116 KDNARDIPQQPSHSQNPSSSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPSPRRKPSFFS 175

Query: 194 QAAIARRIEAAHGAGG-DLPPS 256
           ++ + R+          +LPPS
Sbjct: 176 KSNLKRKYRYLKNPDAWNLPPS 197

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>H1E_CHITE (P40278) Histone H1E|
          Length = 237

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +2

Query: 38  SQPSRRATQAGMATSSGGQSSPRAASDLAVIPSYP---EMIVEAIASLREPNGSSQAAIA 208
           S P  +  +A  A  +    S +     A  P++P   EM+V AI +L+E  GSS  AI 
Sbjct: 19  SSPKGKKEKAPKAPKAEKPKSDKPKKPKAA-PTHPPVSEMVVNAITTLKERGGSSLIAIK 77

Query: 209 RRIEAAH 229
           + + A +
Sbjct: 78  KFVAAQY 84

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>H10_RAT (P43278) Histone H1.0 (H1(0)) (Histone H1')|
          Length = 193

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +2

Query: 59  TQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQAAIARRIEAAHGAG 238
           T+   +T +      +AA      P Y +MIV AI + +   GSS+ +I + I++ +  G
Sbjct: 1   TENSTSTPAAKPKRAKAAKKSTDHPKYSDMIVAAIQAEKNRAGSSRQSIQKYIKSHYKVG 60

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>DAN1_YEAST (P47178) Cell wall protein DAN1 precursor (Covalently-linked cell|
           wall protein 13)
          Length = 298

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 38  SQPSRRATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASLREPNGSSQAA 202
           S+ S  AT++  ++ S  ++S  AAS  A + S        IAS  E + +S  A
Sbjct: 134 SEASSAATESSSSSESSAETSSNAASTQATVSSESSSAASTIASSAESSVASSVA 188


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.127    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,295,629
Number of Sequences: 219361
Number of extensions: 422799
Number of successful extensions: 2430
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 2307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2420
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result