Clone Information

BLAST Search Result

Clone Name	bart22d07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	32	0.054
2	OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-b...	35	0.12
3	NEK1_CAEEL (P84199) Serine/threonine-protein kinase D1044.8 (EC ...	35	0.16
4	MIS_BOVIN (P03972) Muellerian-inhibiting factor precursor (MIS) ...	33	0.60
5	POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Proteas...	33	0.60
6	IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2	32	0.79
7	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	32	0.79
8	SUZ2_DROME (P25172) Protein suppressor 2 of zeste (Protein poste...	27	0.83
9	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	32	1.3
10	ATG26_YARLI (Q6C8M8) Sterol 3-beta-glucosyltransferase (EC 2.4.1...	32	1.3
11	DTX2_MOUSE (Q8R3P2) Protein deltex-2 (Deltex-2) (Deltex2) (mDTX2)	32	1.3
12	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	32	1.3
13	RGDSR_HUMAN (Q8IZJ4) Ral-GDS-related protein (hRGR)	32	1.3
14	PROB_SYNPX (Q7U842) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glut...	32	1.3
15	MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia p...	31	1.8
16	UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (E...	31	1.8
17	HPAB3_PSESM (Q2QCI9) Effector protein hopAB3 (Avirulence protein...	31	1.8
18	SEM6B_RAT (O70141) Semaphorin-6B precursor (Semaphorin Z) (Sema Z)	31	2.3
19	LOLB_XANCP (Q8PC65) Outer-membrane lipoprotein lolB precursor	31	2.3
20	M3K1_RAT (Q62925) Mitogen-activated protein kinase kinase kinase...	31	2.3
21	M3K1_MOUSE (P53349) Mitogen-activated protein kinase kinase kina...	31	2.3
22	IF2_THEFY (Q47RV1) Translation initiation factor IF-2	31	2.3
23	MYCB2_MOUSE (Q7TPH6) Probable ubiquitin ligase protein MYCBP2 (E...	31	2.3
24	SMRC1_HUMAN (Q92922) SWI/SNF-related matrix-associated actin-dep...	28	2.9
25	IE18_PRVIF (P11675) Immediate-early protein IE180	30	3.0
26	ATOH1_PANTR (Q5IS79) Atonal protein homolog 1	30	3.0
27	WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protei...	30	3.0
28	RHG26_HUMAN (Q9UNA1) Rho-GTPase-activating protein 26 (Oligophre...	30	3.0
29	PKSC_STRCO (Q9S2C0) Serine/threonine protein kinase pksC (EC 2.7...	30	3.9
30	LEG3_RABIT (P47845) Galectin-3 (Galactose-specific lectin 3) (Ma...	30	3.9
31	ATOH1_HUMAN (Q92858) Atonal protein homolog 1 (Helix-loop-helix ...	30	3.9
32	VP40_HHV11 (P10210) Capsid protein P40 (Virion structural protei...	30	3.9
33	DNAE2_GLUOX (Q5HXU1) Error-prone DNA polymerase (EC 2.7.7.7)	30	3.9
34	MMPL3_MYCTU (O53657) Putative membrane protein mmpL3	30	5.1
35	BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associa...	30	5.1
36	Y498_MYCBO (P64712) Hypothetical protein Mb0498	30	5.1
37	Y488_MYCTU (P64711) Hypothetical protein Rv0488/MT0507	30	5.1
38	BUR1_YARLI (Q6C842) Serine/threonine-protein kinase BUR1 (EC 2.7...	25	6.4
39	TENS_CHICK (Q04205) Tensin	29	6.7
40	ROBO3_HUMAN (Q96MS0) Roundabout homolog 3 precursor (Roundabout-...	29	6.7
41	TNR1A_BOVIN (O19131) Tumor necrosis factor receptor superfamily ...	29	6.7
42	XKR7_RAT (Q5GH56) XK-related protein 7	29	6.7
43	XKR7_MOUSE (Q5GH64) XK-related protein 7	29	6.7
44	CXA12_HUMAN (Q5T442) Gap junction alpha-12 protein (Connexin-47)...	29	6.7
45	TAF12_DROME (P49905) Transcription initiation factor TFIID subun...	29	6.7
46	BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-assoc...	29	6.7
47	NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4...	24	7.8
48	FGD1_MOUSE (P52734) FYVE, RhoGEF and PH domain-containing protei...	26	8.0
49	STE20_YEAST (Q03497) Serine/threonine-protein kinase STE20 (EC 2...	29	8.7
50	IF2_CAUCR (Q9AC25) Translation initiation factor IF-2	29	8.7
51	Y24K_STRGR (P12752) Hypothetical 24.7 kDa protein in photolyase ...	29	8.7
52	NETR_TRAPH (Q5G266) Neurotrypsin precursor (EC 3.4.21.-)	29	8.7
53	SEM6B_MOUSE (O54951) Semaphorin-6B precursor (Semaphorin VIB) (S...	29	8.7
54	LEM2_CAEEL (Q9XTB5) LEM protein 2 (Ce-MAN1) (MAN1 homolog)	29	8.7
55	ROBO2_MOUSE (Q7TPD3) Roundabout homolog 2 precursor	29	8.7
56	JUN_PIG (P56432) Transcription factor AP-1 (Activator protein 1)...	29	8.7
57	SELO_HUMAN (Q9BVL4) Selenoprotein O	29	8.7
58	IF2_BRAJA (Q89WA9) Translation initiation factor IF-2	29	8.7
59	IE18_PRVKA (P33479) Immediate-early protein IE180	29	8.7
60	IF2_MYCPA (Q73VV4) Translation initiation factor IF-2	29	8.7
61	NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Si...	29	8.7
62	PNRC1_HUMAN (Q12796) Proline-rich nuclear receptor coactivator 1...	29	8.7
63	COL1_CAEEL (P08124) Cuticle collagen 1 precursor (Protein squat-...	26	8.9

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 31.6 bits (70), Expect(2) = 0.054
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -1

Query: 490 RRRPGPNSLPSGPRPRPGAHAAWP----RCHAPSRSTPRALADLTDAYSTHAPSRTGATP 323
           RRRP P   PS  R  P      P    R  +P R   R+ A L+ + S+ + SR+ + P
Sbjct: 308 RRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPP 367

Query: 322 RR 317
           ++
Sbjct: 368 KK 369



 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = -3

Query: 401 PLHSTCPRRSHRCLFHPRALADGRDAPPHADPARSVPGPPLHSLAAPP 258
           P HS  PRR HR     R     R +P    P R +P PP H  +  P
Sbjct: 294 PSHSR-PRRRHRSRSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSP 340



 Score = 23.5 bits (49), Expect(2) = 0.054
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
 Frame = -3

Query: 326 APPHADPARSVPGPP-----LHSLAAPPR 255
           +PP   P R+V  PP     L   A+PPR
Sbjct: 365 SPPKKPPKRTVSSPPRKTRRLSPSASPPR 393

to top

>OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-blind)|
           (L(1)omb) (Protein bifid)
          Length = 972

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
 Frame = -1

Query: 478 GPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRAL--------ADLTDAYSTHAPS 341
           GP SL S PRPRP +H+   R  + S +TP +L        A    A S H+PS
Sbjct: 834 GPRSLSSSPRPRPASHSPPTRPISMSPTTPPSLMKQPRGGGAGAGVAQSQHSPS 887

to top

>NEK1_CAEEL (P84199) Serine/threonine-protein kinase D1044.8 (EC 2.7.11.1)|
          Length = 959

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = -1

Query: 487 RRPGPNSLPSGPRPRPGAHAAWPRCHAPSRS-TPR-----ALADLTDAYSTHAPSRTGAT 326
           +RPG +S  SG    P  + A  R H+ S   TPR      L  +TD YS   PS   A 
Sbjct: 742 KRPGRSSKTSGSGKLPPINPAPRRNHSMSAGETPRPSSIVCLPRITDKYSVMFPSAPSAI 801

Query: 325 PRRTQIQ 305
           P R ++Q
Sbjct: 802 PSRRRVQ 808

to top

>MIS_BOVIN (P03972) Muellerian-inhibiting factor precursor (MIS)|
           (Anti-Muellerian hormone) (AMH) (Mullerian-inhibiting
           substance)
          Length = 575

 Score = 32.7 bits (73), Expect = 0.60
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
 Frame = -3

Query: 404 IPLHSTCPRRSHRCLF-----HPRALADGRDAPPHADP--------ARSVPGPPLHSLAA 264
           +P  S+ P  +H  L       PRA  +  +APP ADP         R++ GPP  + A+
Sbjct: 267 LPARSSAPMPAHGRLDLVPFPQPRASPEPEEAPPSADPFLETLTRLVRALAGPP--ARAS 324

Query: 263 PPRASV 246
           PPR ++
Sbjct: 325 PPRLAL 330

to top

>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC|
           3.4.22.-) (p150); RNA-directed RNA polymerase/helicase
           (EC 2.7.7.48) (EC 3.6.1.-) (p90)]
          Length = 2115

 Score = 32.7 bits (73), Expect = 0.60
 Identities = 24/52 (46%), Positives = 26/52 (50%)
 Frame = -3

Query: 407 PIPLHSTCPRRSHRCLFHPRALADGRDAPPHADPARSVPGPPLHSLAAPPRA 252
           P P     PRR+ R   H    +D R  PP A PAR  P PP  S  APPRA
Sbjct: 721 PPPGDPPPPRRARRSQRH----SDARGTPPPA-PARDPP-PPAPSPPAPPRA 766

to top

>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 32.3 bits (72), Expect = 0.79
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = -1

Query: 508 KPALDHRRRPGPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRALADLT 368
           KP      RPG    P GPRP P       R  AP+ S P+A A+ T
Sbjct: 62  KPGPAASARPGAKPTPGGPRPGP-------RTPAPAASAPQAPAEQT 101

to top

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 32.3 bits (72), Expect = 0.79
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -1

Query: 490 RRRPGPNSLPSGPRPRPGAHAAWP----RCHAPSRSTPRALADLTDAYSTHAPSRTGATP 323
           RRRP P   PS  R  P      P    R  +P R   R+ A L+ + S+ + SR+ + P
Sbjct: 310 RRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSPP 369

Query: 322 RR 317
           ++
Sbjct: 370 KK 371

to top

>SUZ2_DROME (P25172) Protein suppressor 2 of zeste (Protein posterior sex|
           combs)
          Length = 1368

 Score = 26.6 bits (57), Expect(2) = 0.83
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 468 PSRLDHDHALAPTQHGLAAMPHPAPLHVPSQISPMP 361
           P    H H  A     +  MP P PL +P  ++ +P
Sbjct: 889 PKHAGHGHGAAKRSCQMPTMPMPLPLPLPMPMTTIP 924



 Score = 24.3 bits (51), Expect(2) = 0.83
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 353  PRALADGRD--APPHADPARSVPGPPLHSLAAPPRA 252
            P AL + R+  AP H+ P++S P    +S  +PP A
Sbjct: 956  PPALINLRNTAAPQHSFPSKSSPKVEANSKKSPPAA 991

to top

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -1

Query: 490 RRRPGPNSLPSGPRPRPGAHAAWP----RCHAPSRSTPRALADLTDAYSTHAPSRTGATP 323
           RRRP P   PS  R  P      P    R  +P R   R+ A L+ + S+ + SR+ + P
Sbjct: 312 RRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPP 371

Query: 322 RR 317
           ++
Sbjct: 372 KK 373

to top

>ATG26_YARLI (Q6C8M8) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)|
           (Autophagy-related protein 26)
          Length = 1424

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -1

Query: 508 KPALDHRRRPGPNSLPSGPRPRPGAHAAWPRCHAPSRSTP 389
           +P L  +R       PS P P PG+    P  HAP  STP
Sbjct: 521 RPNLASQRTSSSTLFPSAP-PTPGSQPTTPGVHAPGSSTP 559

to top

>DTX2_MOUSE (Q8R3P2) Protein deltex-2 (Deltex-2) (Deltex2) (mDTX2)|
          Length = 619

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = -1

Query: 478 GPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHA----PSRTGATPRRTQ 311
           GP  LPSGP    GA A++P    PS S+P +           A     +  G T   + 
Sbjct: 287 GPQLLPSGPSTSSGASASFP--SGPSSSSPGSAPTTVPVQMPKASRVQQALAGMTSVLSA 344

Query: 310 IQLEACLAR 284
           I L  CL+R
Sbjct: 345 IGLPVCLSR 353

to top

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -1

Query: 490 RRRPGPNSLPSGPRPRPGAHAAWP----RCHAPSRSTPRALADLTDAYSTHAPSRTGATP 323
           RRRP P   PS  R  P      P    R  +P R   R+ A L+ + S+ + SR+ + P
Sbjct: 312 RRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPP 371

Query: 322 RR 317
           ++
Sbjct: 372 KK 373

to top

>RGDSR_HUMAN (Q8IZJ4) Ral-GDS-related protein (hRGR)|
          Length = 473

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -1

Query: 481 PGPNSL-PSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSRTG 332
           P PN   P  P PRPG HA       P+   P  LADL  A    +P+  G
Sbjct: 116 PEPNEAKPDDPAPRPGQHALTMPALEPA---PPLLADLGPALEPESPAALG 163

to top

>PROB_SYNPX (Q7U842) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)|
           (GK)
          Length = 357

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +3

Query: 438 PGRGRGPDGREFGPGRLRWSSAGLQR 515
           P R +GPDGRE G G  + SSA +QR
Sbjct: 307 PVRLQGPDGRELGRGLCQLSSAAVQR 332

to top

>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2|
            (ALL1-related protein)
          Length = 5262

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -1

Query: 517  QRCKPALDHRRRPGPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSR 338
            +R  PA    ++   +S P   RPR GAH    R  A  +ST  ++  L  A    +PS+
Sbjct: 1016 RRSSPARSRIKQGRSSSFPGRRRPRGGAHGGRGRGRARLKSTASSIETLVVADIDSSPSK 1075

to top

>UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 51)
           (Ubiquitin-specific-processing protease 51)
           (Deubiquitinating enzyme 51)
          Length = 711

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 26/60 (43%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
 Frame = -3

Query: 407 PIPLHST----CPRRSHRCLFHPRALA---DGRDAPPHADPARSVPGPPLHSLAAP-PRA 252
           P+  HS+    CPRR  R    PRA +    G  APP   PAR  P PP     AP PRA
Sbjct: 88  PLRCHSSSSPVCPRRKPRPRPQPRARSRSQPGLSAPP-PPPARPPPPPPPPPPPAPRPRA 146

to top

>HPAB3_PSESM (Q2QCI9) Effector protein hopAB3 (Avirulence protein avrPtoB)|
           [Includes: E3 ubiquitin-protein ligase (EC 6.3.2.-)]
          Length = 579

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -1

Query: 451 RPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSRTGATPR 320
           RP+  A AA P+  A  R TP A     DA ++H  +  G TP+
Sbjct: 89  RPQESAEAAAPQARAEERHTPEA-----DAAASHVRTEGGRTPQ 127

to top

>SEM6B_RAT (O70141) Semaphorin-6B precursor (Semaphorin Z) (Sema Z)|
          Length = 887

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 10/48 (20%)
 Frame = -1

Query: 505 PALDHRRRPGPNSLPSGP----------RPRPGAHAAWPRCHAPSRST 392
           PA    RRPGP+  P+              RPG H   PR HAP+ ST
Sbjct: 826 PATSSLRRPGPHGPPTAALRRTHTFNSGEARPGGHR--PRRHAPADST 871

to top

>LOLB_XANCP (Q8PC65) Outer-membrane lipoprotein lolB precursor|
          Length = 218

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 408 AWQRGHAAWA-PGRGRGPDGREFGPGRLRWSSAG 506
           AW + H AW+  GR     GR+ G GRL W   G
Sbjct: 52  AWLQAHPAWSFQGRVAISKGRDGGSGRLDWQQDG 85

to top

>M3K1_RAT (Q62925) Mitogen-activated protein kinase kinase kinase 1 (EC|
           2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1)
           (MEKK 1)
          Length = 1493

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
 Frame = -1

Query: 505 PALDHRRRPGPNSLPSGPRPRPGAHAAWPRCHAP-----SRSTPRALADLTDAYSTHAPS 341
           PA   RR P P S PSG   +P +     +  +P      R TP   A   D +S ++P 
Sbjct: 233 PAPKGRRSPSPGSSPSGRSGKPESPGVRRKRVSPVPFQSGRITPPRRAPSPDGFSPYSPE 292

Query: 340 RT 335
            T
Sbjct: 293 ET 294

to top

>M3K1_MOUSE (P53349) Mitogen-activated protein kinase kinase kinase 1 (EC|
           2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1)
           (MEKK 1)
          Length = 1493

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
 Frame = -1

Query: 505 PALDHRRRPGPNSLPSGPRPRPGAHAAWPRCHAP-----SRSTPRALADLTDAYSTHAPS 341
           PA   RR P P S PSG   +P +     +  +P      R TP   A   D +S ++P 
Sbjct: 238 PAPKGRRSPSPGSSPSGRSVKPESPGVRRKRVSPVPFQSGRITPPRRAPSPDGFSPYSPE 297

Query: 340 RT 335
            T
Sbjct: 298 ET 299

to top

>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 484 RPGPNSLPSGPRPRPGAHAAW-PRCHAPSRSTPR 386
           RPGP   P    PRPGA A   PR  AP    PR
Sbjct: 188 RPGPRPHPGMMPPRPGASAGGPPRPQAPRPQAPR 221

to top

>MYCB2_MOUSE (Q7TPH6) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc|
            binding protein 2) (Protein associated with Myc)
            (Pam/highwire/rpm-1 protein)
          Length = 4711

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -1

Query: 481  PGPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRALA--DLTDAYSTHAPSRTGATPRRTQI 308
            PGP S  S P+P+P      PR      S+PR+ +  D      + AP++T   P R + 
Sbjct: 2847 PGPGSRSSSPKPKP---LPTPRSSPSGASSPRSSSPQDKNLPQKSTAPAKTKLDPPRERS 2903

Query: 307  QLEACLARPCT 275
            + ++    P T
Sbjct: 2904 KSDSYTLDPDT 2914

to top

>SMRC1_HUMAN (Q92922) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 1 (SWI/SNF complex 155
            kDa subunit) (BRG1-associated factor 155)
          Length = 1105

 Score = 28.1 bits (61), Expect(2) = 2.9
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = -1

Query: 499  LDHRRRPGPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSRTGATP 323
            L H + P P+  P  P   PG  +  P  H P R  P   A++        PS +G TP
Sbjct: 1001 LMHHQMPPPH--PPQPGQIPGPGSMMPGQHMPGRMIPTVAANI-------HPSGSGPTP 1050



 Score = 20.8 bits (42), Expect(2) = 2.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 323  PPHADPARSVPGPP 282
            PP   PA  VP PP
Sbjct: 1082 PPPPPPADGVPPPP 1095

to top

>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 24/60 (40%), Positives = 30/60 (50%)
 Frame = -1

Query: 496 DHRRRPGPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSRTGATPRR 317
           D   RPG     +GP P P A AA PR   PS S+  A A  + A ++ AP+   A P R
Sbjct: 410 DEGVRPGAPLARAGPPPSPPAPAAAPR---PSASS--ASATSSSAAASPAPAPEPARPPR 464

to top

>ATOH1_PANTR (Q5IS79) Atonal protein homolog 1|
          Length = 356

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -1

Query: 496 DHRRRPGPNSLPSGPRPRPGAHAAWPRCHA-PSRSTPRALADLTDAYSTHAPSRTG-ATP 323
           DH R+P P+ LP  P P P    A  +    P      +L D TD  +  AP+  G  T 
Sbjct: 18  DHHRQPQPHHLPQPPPPPPPQPPATLQAREHPVYPPELSLLDSTDPRAWLAPTLQGICTA 77

Query: 322 RRTQIQLEA 296
           R  Q  L +
Sbjct: 78  RAAQYLLHS 86

to top

>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related|
           protein) (WIP-and CR16-homologous protein)
          Length = 440

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
 Frame = -3

Query: 413 PCPIPLHST-CPRRSHRCLFHP---RALADGRDAPPHADPARSVP-------GPPLHSLA 267
           P P+P+HS+  P  +      P   + L  GR+ PP   P +  P       GP   SLA
Sbjct: 190 PTPLPMHSSKAPAYNREKPLPPTPGQRLHPGREGPPAPPPVKPPPSPVNIRTGPSGQSLA 249

Query: 266 APP 258
            PP
Sbjct: 250 PPP 252

to top

>RHG26_HUMAN (Q9UNA1) Rho-GTPase-activating protein 26 (Oligophrenin-1-like|
           protein) (GTPase regulator associated with focal
           adhesion kinase)
          Length = 814

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -1

Query: 475 PNSLPSGPRPRPGAHAAWPRCHAPSRSTP 389
           PNSLP  P P      +WP   APS   P
Sbjct: 660 PNSLPPNPSPTSPLSPSWPMFSAPSSPMP 688

to top

>PKSC_STRCO (Q9S2C0) Serine/threonine protein kinase pksC (EC 2.7.11.1)|
          Length = 556

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -1

Query: 478 GPNSLPSGPRPRPGAH---AAWPRCHAPSRSTPRALADLTDAYSTHAPSRTGATP 323
           GP   P  P P PG +      P  H+P+   P+     T A + +A  +  ATP
Sbjct: 329 GPVQTPYQPTPSPGPNPYGTPAPAAHSPAYGYPQQAGYQTPAPAPYAQQQAAATP 383

to top

>LEG3_RABIT (P47845) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)|
           (IgE-binding protein) (35 kDa lectin)
           (Carbohydrate-binding protein 35) (CBP 35)
           (Laminin-binding protein) (Lectin L-29)
          Length = 241

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 475 PNSLPSGPRPRPGAHAAWP 419
           P   P GP P PGAH A+P
Sbjct: 53  PGQAPPGPYPGPGAHGAYP 71

to top

>ATOH1_HUMAN (Q92858) Atonal protein homolog 1 (Helix-loop-helix protein hATH-1)|
          Length = 354

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -1

Query: 496 DHRRRPGPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSRTG-ATPR 320
           DH R+P P+ LP  P P P   A       P      +L D TD  +  AP+  G  T R
Sbjct: 18  DHHRQPQPHHLPQ-PPPPPQPPATLQAREHPVYPPELSLLDSTDPRAWLAPTLQGICTAR 76

Query: 319 RTQIQLEA 296
             Q  L +
Sbjct: 77  AAQYLLHS 84

to top

>VP40_HHV11 (P10210) Capsid protein P40 (Virion structural protein UL26)|
           [Contains: Capsid protein VP24 (EC 3.4.21.97)
           (Assemblin) (Protease); Capsid protein VP22A; UL26.5
           protein; C-terminal peptide]
          Length = 635

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -1

Query: 484 RPGPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSRT--GATPRRTQ 311
           RP P+S P GP   P +HA  P  +AP+   P        +  T AP  T     P  T 
Sbjct: 536 RPPPHSAPYGPPQGPASHAPTPP-YAPAACPPGPPPPPCPSTQTRAPLPTEPAFPPAATG 594

Query: 310 IQLEA 296
            Q EA
Sbjct: 595 SQPEA 599

to top

>DNAE2_GLUOX (Q5HXU1) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 901

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
 Frame = -1

Query: 448 PRPGAHAAWPRC-HAPSRS-----TPRALADLTDAYSTHAPSRTGATPRRTQIQLEACLA 287
           P PG H AW  C  A SRS     TP  L   T A+ TH+ S     P    I   A   
Sbjct: 16  PAPGGHRAWIACSSALSRSAVLAGTPARLPVSTSAFLTHSFSVCAEQPILLAIDTIAVQR 75

Query: 286 RPCTAS 269
             C+ S
Sbjct: 76  DGCSPS 81

to top

>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3|
          Length = 944

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 17/80 (21%)
 Frame = -1

Query: 496 DHRRRPGPNSLPSGPR-------------PRPGAHAAWPRCHAP--SRSTPRALADLTDA 362
           D R+RP  N  P+ P              PRP      P   +P  +RS+P +  +LT A
Sbjct: 753 DERKRPVSNGRPARPPVTAGLVAARAAGDPRPPHDPTHPLAESPRPARSSPASSPELTPA 812

Query: 361 Y-STHAPSR-TGATPRRTQI 308
             +T AP+  +GA+  R QI
Sbjct: 813 LEATAAPAAPSGASTTRMQI 832

to top

>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2161

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -1

Query: 490  RRRPGPNSLPSGPRPRPGAHAAWPRCHAPSRSTP 389
            R +PGP   P G  PRP  H   PR      S P
Sbjct: 1498 RPKPGPPQAPQGSSPRPPTHYDPPRASNAISSDP 1531

to top

>Y498_MYCBO (P64712) Hypothetical protein Mb0498|
          Length = 201

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 112 AWLVGAALLTARVRFRPPAGATRKRGKACFIGLVSL 5
           A+L+G ALL AR  +RP      + G A  IG+V +
Sbjct: 67  AFLIGYALLAARNAWRPSGLVPSESGPAALIGVVQM 102

to top

>Y488_MYCTU (P64711) Hypothetical protein Rv0488/MT0507|
          Length = 201

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 112 AWLVGAALLTARVRFRPPAGATRKRGKACFIGLVSL 5
           A+L+G ALL AR  +RP      + G A  IG+V +
Sbjct: 67  AFLIGYALLAARNAWRPSGLVPSESGPAALIGVVQM 102

to top

>BUR1_YARLI (Q6C842) Serine/threonine-protein kinase BUR1 (EC 2.7.11.22) (EC|
           2.7.11.23)
          Length = 706

 Score = 24.6 bits (52), Expect(2) = 6.4
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -3

Query: 356 HPRALADGRDAPPHADPARSVPGPPLHSLAAPPRAS 249
           +PR     RD  P   P     GPP    + PPR S
Sbjct: 614 NPRDSDKSRDLGPPPGPPLPADGPPPPPSSNPPRPS 649



 Score = 23.1 bits (48), Expect(2) = 6.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 475 PNSLPSGPRPRPG 437
           P  LP GP P PG
Sbjct: 581 PRELPKGPPPAPG 593

to top

>TENS_CHICK (Q04205) Tensin|
          Length = 1744

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 17/58 (29%), Positives = 22/58 (37%)
 Frame = -1

Query: 505 PALDHRRRPGPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSRTG 332
           P  +H   P P  LP+GP    G H    + H     TP      TD      P++ G
Sbjct: 523 PMHNHAPGPAPARLPAGP----GRHVVPAQVHVNGAGTPLLAERETDILDDELPNQDG 576

to top

>ROBO3_HUMAN (Q96MS0) Roundabout homolog 3 precursor (Roundabout-like protein 3)|
          Length = 1386

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 514  RCKP-ALDHRRRPGPNSLPSGPRPRPGAHAAW 422
            R KP AL +RR   P  LP  P P P   A+W
Sbjct: 1250 RKKPKALPYRRENSPGDLPPPPLPPPEEEASW 1281

to top

>TNR1A_BOVIN (O19131) Tumor necrosis factor receptor superfamily member 1A|
           precursor (p60) (TNF-R1) (TNF-RI) (TNFR-I) (p55)
          Length = 471

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -3

Query: 422 ASLPCPIPLHSTCPRRSHRCLFHPRALADGRDAPPHADPARSVPGPPLHSLAAPP 258
           +S P  IP + +C R +   +  P +      APPH      +PGPP  +    P
Sbjct: 280 SSSPVSIPPYISCDRSNFGAVASPSS----ETAPPHLKAGPILPGPPASTHLCTP 330

to top

>XKR7_RAT (Q5GH56) XK-related protein 7|
          Length = 580

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 365 CLFHPRALADGRDAPPHADPARSVP-GPPLHSLAAPPRA 252
           CL HP     G  AP    P    P GPP  ++ +PPR+
Sbjct: 437 CLLHPNGPMLGPQAPGCIFPEAPGPCGPPADAITSPPRS 475

to top

>XKR7_MOUSE (Q5GH64) XK-related protein 7|
          Length = 580

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 365 CLFHPRALADGRDAPPHADPARSVP-GPPLHSLAAPPRA 252
           CL HP     G  AP    P    P GPP  ++ +PPR+
Sbjct: 437 CLLHPNGPMLGPQAPGCIFPEAPGPCGPPADAITSPPRS 475

to top

>CXA12_HUMAN (Q5T442) Gap junction alpha-12 protein (Connexin-47) (Cx47)|
           (Connexin-46.6) (Cx46.6)
          Length = 439

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -1

Query: 490 RRRPGPNSLPSGPRPRPGAHAAWP 419
           RRRPGP   P    P P  HA WP
Sbjct: 115 RRRPGPRRAPRAHLPPP--HAGWP 136

to top

>TAF12_DROME (P49905) Transcription initiation factor TFIID subunit 12|
           (Transcription initiation factor TFIID 28-alpha kDa/22
           kDa subunits) (p28-alpha/p22) (TAFII30 alpha)
          Length = 196

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -2

Query: 495 TTEDARGRTPSRLDHDHALAPTQHGLAAMPHPAPLHVPSQISPM 364
           TT D+ G     L H+H    +  GL    H  P+  PSQ SPM
Sbjct: 6   TTFDSNGVAEHHLHHNHNSTSSASGLL---HDPPMASPSQHSPM 46

to top

>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2157

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 16/86 (18%)
 Frame = -1

Query: 490  RRRPGPNSLPSGPRPRPGAHAAWPRCHAPSRS----------------TPRALADLTDAY 359
            R +PGP   P GP PRP       R ++   S                TPR  A +    
Sbjct: 1498 RHKPGPPQAPQGPSPRPPTRYEPQRVNSGLSSDPHFEEPGPMVRGVGGTPRDSAGV---- 1553

Query: 358  STHAPSRTGATPRRTQIQLEACLARP 281
            S   P R    PR+ ++  E  L  P
Sbjct: 1554 SPFPPKRRERPPRKPELLQEESLPPP 1579

to top

>NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D) (EB11)
          Length = 1336

 Score = 24.3 bits (51), Expect(2) = 7.8
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
 Frame = -1

Query: 481  PGPNSLPSGPRPRPGAHAAWPRCH----APSRSTPRALA 377
            P P    +GP PR  A    PR H      S  TP A A
Sbjct: 1209 PPPPPWAAGPLPRRRARCGCPRSHPHRPRASHRTPAAAA 1247



 Score = 23.1 bits (48), Expect(2) = 7.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 320  PHADPARSVPGPPLHSLAAPPRA 252
            P A PAR + GP  H+   P  A
Sbjct: 1279 PRAAPARRLTGPSRHARRCPHAA 1301

to top

>FGD1_MOUSE (P52734) FYVE, RhoGEF and PH domain-containing protein 1|
           (Faciogenital dysplasia 1 protein homolog) (Zinc finger
           FYVE domain-containing protein 3) (Rho/Rac guanine
           nucleotide exchange factor FGD1) (Rho/Rac GEF)
          Length = 960

 Score = 26.2 bits (56), Expect(2) = 8.0
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = -1

Query: 490 RRRPGPNSLPSGPRPRPGAHAAWPRCHAPSRST----PRAL 380
           R  PGP +   GPRP P   A  P+   P + +    PR L
Sbjct: 134 RSDPGPPTEIPGPRPSPLKRAPGPKPQVPPKPSYLQMPRVL 174



 Score = 21.2 bits (43), Expect(2) = 8.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 308 PARSVPGPPLHSLAAPPRAS 249
           P   +P PP   L A PR +
Sbjct: 176 PPEPIPPPPSRPLPADPRVA 195

to top

>STE20_YEAST (Q03497) Serine/threonine-protein kinase STE20 (EC 2.7.11.1)|
          Length = 939

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -1

Query: 466 LPSGPRPRP--GAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSRTGATPRRTQIQLEAC 293
           +PS P P+P   A A+ P   +P  ++   ++ L   ++   P+RT  +P R+ I   A 
Sbjct: 471 IPSRPAPKPPSSASASAPIIKSPVMNSAANVSPLKQTHAPTTPNRT--SPNRSSISRNAT 528

Query: 292 LAR 284
           L +
Sbjct: 529 LKK 531

to top

>IF2_CAUCR (Q9AC25) Translation initiation factor IF-2|
          Length = 1009

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -1

Query: 478 GPNSLPSGPRPR-PGAHAAWPRCHAPSRSTPR 386
           GP   P GPRP  P A  A P     +RS PR
Sbjct: 309 GPGGPPRGPRPGVPAAAPATPEIQRATRSAPR 340

to top

>Y24K_STRGR (P12752) Hypothetical 24.7 kDa protein in photolyase 5'region|
          Length = 238

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 23/67 (34%), Positives = 27/67 (40%)
 Frame = -1

Query: 487 RRPGPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSRTGATPRRTQI 308
           R P P S  + P PRP   +    C   SR   R L    D    H P+  G T R    
Sbjct: 32  RPPPPGS--ASPSPRPRRASCATGCCGRSRPYARRLRRPADG---HGPAGGGRTGRWYAY 86

Query: 307 QLEACLA 287
            L AC+A
Sbjct: 87  ALAACVA 93

to top

>NETR_TRAPH (Q5G266) Neurotrypsin precursor (EC 3.4.21.-)|
          Length = 875

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 323 PPHADPARSVPGPPLHSLAAPPRA 252
           P H  P R+ P PPL   + PPRA
Sbjct: 48  PTHQRPPRTRPPPPLPRFSRPPRA 71

to top

>SEM6B_MOUSE (O54951) Semaphorin-6B precursor (Semaphorin VIB) (Sema VIB)|
           (Semaphorin N) (Sema N)
          Length = 886

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
 Frame = -1

Query: 505 PALDHRRRPGPNSLPSGP----------RPRPGAHAAWPRCHAPSRST 392
           PA    RRPGP+  P+              RPG H   PR H P+ ST
Sbjct: 825 PATSSLRRPGPHGPPTAALRRTHTFNSGEARPGGHR--PRRHPPADST 870

to top

>LEM2_CAEEL (Q9XTB5) LEM protein 2 (Ce-MAN1) (MAN1 homolog)|
          Length = 500

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 397 STPRALADLTDAYSTHAPSRTGATPRRTQI 308
           S P  + D T ++ST    R GATP R  I
Sbjct: 197 SVPGLITDFTPSFSTFGSDRPGATPPRKSI 226

to top

>ROBO2_MOUSE (Q7TPD3) Roundabout homolog 2 precursor|
          Length = 1470

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 508  KPALDHRRRPGPNSLPSGPRPRPG 437
            +P L HRR   P+ LP  P P PG
Sbjct: 1302 QPVLPHRREGMPDDLPPPPDPPPG 1325

to top

>JUN_PIG (P56432) Transcription factor AP-1 (Activator protein 1) (AP1)|
           (Proto-oncogene c-jun) (V-jun avian sarcoma virus 17
           oncogene homolog)
          Length = 331

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 398 LHSTCPRRSHRCLFHPRALADGRDAPPHADPARSVPGPPLHSLAAPPR 255
           LHS  P  ++   F+P AL+ G  AP +     + P  P      PP+
Sbjct: 163 LHSEPPVYANLSNFNPGALSSGGGAPSYGAAGLAFPAQPQQQQQQPPQ 210

to top

>SELO_HUMAN (Q9BVL4) Selenoprotein O|
          Length = 669

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -1

Query: 481 PGPNSLPSGPRPRPGA 434
           PGP   PS PRP PGA
Sbjct: 65  PGPEGAPSAPRPVPGA 80

to top

>IF2_BRAJA (Q89WA9) Translation initiation factor IF-2|
          Length = 902

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = -1

Query: 463 PSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSRTG 332
           P+ P PRPGA AA P        T  A    T A    AP+  G
Sbjct: 189 PAAPAPRPGAPAARPGTTTTRPGTTTARPATTTAQRPGAPAGRG 232

to top

>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 19/53 (35%), Positives = 22/53 (41%)
 Frame = -1

Query: 496 DHRRRPGPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSR 338
           D   RPG     +GP P P A AA PR  A S S+  A +          P R
Sbjct: 402 DEGVRPGAPLARAGPPPSPPAPAAAPRPSASSASSSAAASPAPAPEPARPPRR 454

to top

>IF2_MYCPA (Q73VV4) Translation initiation factor IF-2|
          Length = 925

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
 Frame = -1

Query: 502 ALDHRRRPGPNSLPSGPRPRPGAHAAWPRC----HAPSRSTPRALADLTDAYSTHAPSRT 335
           ALD+  + G N   + P  +PG  A  P       AP+R  P A      A     P   
Sbjct: 91  ALDNAIKAGGNGEAAAPPAQPGGTATTPAAQATPEAPARPGPAAARPSAPAPGQPKPPAP 150

Query: 334 GATPR 320
           G  PR
Sbjct: 151 GQPPR 155

to top

>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing|
           mediator of retinoic acid and thyroid hormone receptor)
           (SMRT) (SMRTe) (Thyroid-,
           retinoic-acid-receptor-associated corepressor) (T3
           receptor-associating factor) (TRAC) (CTG repeat p
          Length = 2517

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
 Frame = -3

Query: 407 PIPLHSTCPRRSHRCLFHPRALAD--GRDAPPHADPARSVPGPPL-------HSLAAPP 258
           P P   T PRR+ R    P   ++  G   PP A P+ S P P +        + AAPP
Sbjct: 778 PPPGPPTPPRRTSRAPIEPTPASEATGAPTPPPAPPSPSAPPPVVPKEEKEEETAAAPP 836

to top

>PNRC1_HUMAN (Q12796) Proline-rich nuclear receptor coactivator 1 (Proline-rich|
           protein 2) (B4-2 protein)
          Length = 327

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = -1

Query: 517 QRCKPALDHRRRPGPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSR 338
           Q+ +P+L+  R P     PSG +  PG  AA     A +  T  A  DL        P+ 
Sbjct: 118 QQHRPSLEGGRSPATG--PSGAQEVPGPAAALAPSPAAAAGTEGASPDLAPL----RPAA 171

Query: 337 TGATPRRTQI 308
            G TP R ++
Sbjct: 172 PGQTPLRKEV 181

to top

>COL1_CAEEL (P08124) Cuticle collagen 1 precursor (Protein squat-3) (Protein|
           dumpy-15)
          Length = 296

 Score = 26.2 bits (56), Expect(2) = 8.9
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 341 ADGRDAPPHADPARSVPGPP 282
           A G D PP AD     PGPP
Sbjct: 247 APGPDGPPGADGQSGPPGPP 266



 Score = 21.2 bits (43), Expect(2) = 8.9
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = -1

Query: 484 RPGPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSRTG 332
           RPG ++ P  P PR G         AP  +       +++  +  AP   G
Sbjct: 170 RPGTDAAPGSPGPR-GPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPG 219


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,305,286
Number of Sequences: 219361
Number of extensions: 1223770
Number of successful extensions: 6338
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 5218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6277
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result