ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart22d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472296.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
2emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4,... 52 0.002
3dbj|AB190915.1| Oryza sativa (japonica cultivar-group) osysl5 mR... 52 0.002
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
5dbj|AK067281.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
6ref|XM_479250.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.45
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
8gb|AF325198.1|AF325198 Triticum aestivum LRR14 (Lrr14), TAK14 (T... 44 0.45
9dbj|AP003749.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
10dbj|AK068356.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.45
11gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 1.8
12gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
13gb|AC145780.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.8
15gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.8
16gb|AC090488.3| Genomic sequence for Oryza sativa, Nipponbare str... 42 1.8
17gb|AE002098.2| Neisseria meningitidis MC58, complete genome 42 1.8
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
19dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
20dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
21gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
22dbj|AP005830.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
23dbj|AP005258.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
24gb|AF226416.1|AF226416 Neisseria meningitidis strain SWZ107 oute... 42 1.8
25gb|AF226411.1|AF226411 Neisseria meningitidis strain NGF26 outer... 42 1.8
26gb|AF226409.1|AF226409 Neisseria meningitidis strain NGE28 outer... 42 1.8
27gb|AF226408.1|AF226408 Neisseria meningitidis strain NG6/88 oute... 42 1.8
28gb|AF226407.1|AF226407 Neisseria meningitidis strain NG3/88 oute... 42 1.8
29gb|AF226406.1|AF226406 Neisseria meningitidis strain MC58 outer ... 42 1.8
30gb|AF226405.1|AF226405 Neisseria meningitidis strain H44/76 oute... 42 1.8
31gb|AF226401.1|AF226401 Neisseria meningitidis strain BZ83 outer ... 42 1.8
32gb|AF226400.1|AF226400 Neisseria meningitidis strain BZ232 outer... 42 1.8
33gb|AF226399.1|AF226399 Neisseria meningitidis strain BZ198 outer... 42 1.8
34gb|AF226398.1|AF226398 Neisseria meningitidis strain BZ169 outer... 42 1.8
35gb|AF226397.1|AF226397 Neisseria meningitidis strain BZ147 outer... 42 1.8
36gb|AF226391.1|AF226391 Neisseria meningitidis strain 528 outer m... 42 1.8
37gb|AF226390.1|AF226390 Neisseria meningitidis strain 2996 outer ... 42 1.8
38gb|AF226387.1|AF226387 Neisseria meningitidis strain 1000 outer ... 42 1.8
39dbj|AK102397.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
40dbj|AK062161.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
41gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
42gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
43emb|AL596123.32| Mouse DNA sequence from clone RP23-94N18 on chr... 42 1.8
44gb|BC025467.1| Mus musculus AE binding protein 2, mRNA (cDNA clo... 40 7.0
45ref|XM_483039.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.0
46ref|XM_465206.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.0
47gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 7.0
48gb|AC133098.7| Mus musculus BAC clone RP23-336L12 from chromosom... 40 7.0
49gb|AC093312.7| Oryza sativa chromosome 3 BAC OSJNBa0095N06 genom... 40 7.0
50gb|CP000088.1| Thermobifida fusca YX, complete genome 40 7.0
51emb|AL607001.4|OSJN00128 Oryza sativa genomic DNA, chromosome 4,... 40 7.0
52gb|AE005819.1| Caulobacter crescentus CB15 section 145 of 359 of... 40 7.0
53gb|AF069773.1|AF069773 Oryza sativa putative type 1a plasma memb... 40 7.0
54dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
55dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
56dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
57dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
58gb|AC092291.3| Homo sapiens chromosome 16 clone CTD-2502C11, com... 40 7.0
59gb|AC009167.9| Homo sapiens chromosome 16 clone RP11-82O18, comp... 40 7.0
60dbj|AP003340.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
61gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.0
62dbj|AP004376.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
63dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
64dbj|AP004229.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
65gb|AC121359.8| Mus musculus chromosome 15, clone RP23-138I21, co... 40 7.0
66dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
67dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
68emb|BX548169.4| Pig DNA sequence from clone XX-548A10, complete ... 40 7.0
69dbj|AP005517.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
70dbj|AP005410.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
71gb|AC119264.8| Mus musculus chromosome 15, clone RP24-289J12, co... 40 7.0
72gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 7.0
73dbj|AP003053.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
74gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
75emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa... 40 7.0
76emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa... 40 7.0
77emb|AJ867816.2| Uncultured nematode partial 18S rRNA gene, isola... 40 7.0 
>ref|XM_472296.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2175

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 160 ctcggcggcggcggggccgtctcctccttcccct 193
           |||| ||||||||| |||||||||||||||||||
Sbjct: 110 ctcgtcggcggcggcgccgtctcctccttcccct 143
to top
>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08,
             complete sequence
          Length = 145670

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 160   ctcggcggcggcggggccgtctcctccttcccct 193
             |||| ||||||||| |||||||||||||||||||
Sbjct: 20046 ctcgtcggcggcggcgccgtctcctccttcccct 20079
to top
>dbj|AB190915.1| Oryza sativa (japonica cultivar-group) osysl5 mRNA for hypothetical
           protein, complete cds
          Length = 2172

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 160 ctcggcggcggcggggccgtctcctccttcccct 193
           |||| ||||||||| |||||||||||||||||||
Sbjct: 90  ctcgtcggcggcggcgccgtctcctccttcccct 123
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                  
Query: 160      ctcggcggcggcggggccgtctcctccttcccct 193
                |||| ||||||||| |||||||||||||||||||
Sbjct: 19238216 ctcgtcggcggcggcgccgtctcctccttcccct 19238249



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 121      gccgccgccggacggcgtcgccgg 144
                |||||||||||||| |||||||||
Sbjct: 28783317 gccgccgccggacgccgtcgccgg 28783340
to top
>dbj|AK067281.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100H18, full
           insert sequence
          Length = 1521

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 172 ggggccgtctcctccttcccctc 194
           |||||||||||||||||||||||
Sbjct: 2   ggggccgtctcctccttcccctc 24
to top
>ref|XM_479250.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1297

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 111 gcctcctctcgccgccgccgga 132
           ||||||||||||||||||||||
Sbjct: 269 gcctcctctcgccgccgccgga 248
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 111      gcctcctctcgccgccgccgga 132
                ||||||||||||||||||||||
Sbjct: 26359662 gcctcctctcgccgccgccgga 26359641



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 120      cgccgccgccggacggcgtcgccgg 144
                ||||||||||||||| |||||||||
Sbjct: 11450064 cgccgccgccggacgccgtcgccgg 11450040
to top
>gb|AF325198.1|AF325198 Triticum aestivum LRR14 (Lrr14), TAK14 (TAK14), and LRK14 (Lrk14)
             genes, complete cds; and unknown gene
          Length = 43606

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 140   gccgggcaaagcccgtgcggctcggcggcggcggggcc 177
             ||||||||||||| || |||  ||||||||||||||||
Sbjct: 28536 gccgggcaaagcctgtccgggccggcggcggcggggcc 28499
to top
>dbj|AP003749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_D11
          Length = 109399

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 111   gcctcctctcgccgccgccgga 132
             ||||||||||||||||||||||
Sbjct: 13902 gcctcctctcgccgccgccgga 13881
to top
>dbj|AK068356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146D06, full
           insert sequence
          Length = 1297

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 111 gcctcctctcgccgccgccgga 132
           ||||||||||||||||||||||
Sbjct: 269 gcctcctctcgccgccgccgga 248
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 196     gggcggcgtggcgcgggccgt 216
               |||||||||||||||||||||
Sbjct: 1392710 gggcggcgtggcgcgggccgt 1392730
to top
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0063D09 map S1559, complete sequence
          Length = 190721

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 120   cgccgccgccggacggcgtcgccgg 144
             ||||||||||||||| |||||||||
Sbjct: 50938 cgccgccgccggacgccgtcgccgg 50914
to top
>gb|AC145780.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0069P02
             map near S13580, complete sequence
          Length = 88044

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 106   accacgcctcctctcgccgccgccg 130
             ||||| |||||||||||||||||||
Sbjct: 25239 accacccctcctctcgccgccgccg 25215
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 162     cggcggcggcggggccgtctcctccttcc 190
               |||||||||||| | ||||||||||||||
Sbjct: 1297998 cggcggcggcggcggcgtctcctccttcc 1297970



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 121      gccgccgccggacggcgtcgccgg 144
                |||||||||||||| |||||||||
Sbjct: 20658523 gccgccgccggacgccgtcgccgg 20658500
to top
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 328     tcgcgcccgtccgcgagggcgcgtgggtg 356
               ||||| |||||||||| ||||||||||||
Sbjct: 3707081 tcgcggccgtccgcgacggcgcgtgggtg 3707109
to top
>gb|AC090488.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0081F12 from chromosome 10, complete sequence
          Length = 128388

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 174   ggccgtctcctccttcccctc 194
             |||||||||||||||||||||
Sbjct: 95551 ggccgtctcctccttcccctc 95571
to top
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 161   tcggcggcggcggggccgtct 181
             |||||||||||||||||||||
Sbjct: 32076 tcggcggcggcggggccgtct 32056
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 120     cgccgccgccggacggcgtcgccgg 144
               ||||||||||||||| |||||||||
Sbjct: 3683266 cgccgccgccggacgccgtcgccgg 3683242
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 174     ggccgtctcctccttcccctc 194
               |||||||||||||||||||||
Sbjct: 4433943 ggccgtctcctccttcccctc 4433963
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 162     cggcggcggcggggccgtctcctccttcc 190
               |||||||||||| | ||||||||||||||
Sbjct: 1297996 cggcggcggcggcggcgtctcctccttcc 1297968



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 121      gccgccgccggacggcgtcgccgg 144
                |||||||||||||| |||||||||
Sbjct: 20651552 gccgccgccggacgccgtcgccgg 20651529
to top
>gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1126B12,
              complete sequence
          Length = 146241

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 162    cggcggcggcggggccgtctcctccttcc 190
              |||||||||||| | ||||||||||||||
Sbjct: 102900 cggcggcggcggcggcgtctcctccttcc 102872
to top
>dbj|AP005830.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1120F06
          Length = 186712

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 120   cgccgccgccggacggcgtcgccgg 144
             ||||||||||||||| |||||||||
Sbjct: 13722 cgccgccgccggacgccgtcgccgg 13698
to top
>dbj|AP005258.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0446G09
          Length = 146898

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 120   cgccgccgccggacggcgtcgccgg 144
             ||||||||||||||| |||||||||
Sbjct: 59584 cgccgccgccggacgccgtcgccgg 59560
to top
>gb|AF226416.1|AF226416 Neisseria meningitidis strain SWZ107 outer membrane lipoprotein
           GNA33 (gna33) gene, complete cds
          Length = 1326

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 161 tcggcggcggcggggccgtct 181
           |||||||||||||||||||||
Sbjct: 161 tcggcggcggcggggccgtct 181
to top
>gb|AF226411.1|AF226411 Neisseria meningitidis strain NGF26 outer membrane lipoprotein
           GNA33 (gna33) gene, complete cds
          Length = 1326

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 161 tcggcggcggcggggccgtct 181
           |||||||||||||||||||||
Sbjct: 161 tcggcggcggcggggccgtct 181
to top
>gb|AF226409.1|AF226409 Neisseria meningitidis strain NGE28 outer membrane lipoprotein
           GNA33 (gna33) gene, complete cds
          Length = 1326

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 161 tcggcggcggcggggccgtct 181
           |||||||||||||||||||||
Sbjct: 161 tcggcggcggcggggccgtct 181
to top
>gb|AF226408.1|AF226408 Neisseria meningitidis strain NG6/88 outer membrane lipoprotein
           GNA33 (gna33) gene, complete cds
          Length = 1326

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 161 tcggcggcggcggggccgtct 181
           |||||||||||||||||||||
Sbjct: 161 tcggcggcggcggggccgtct 181
to top
>gb|AF226407.1|AF226407 Neisseria meningitidis strain NG3/88 outer membrane lipoprotein
           GNA33 (gna33) gene, complete cds
          Length = 1326

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 161 tcggcggcggcggggccgtct 181
           |||||||||||||||||||||
Sbjct: 161 tcggcggcggcggggccgtct 181
to top
>gb|AF226406.1|AF226406 Neisseria meningitidis strain MC58 outer membrane lipoprotein GNA33
           (gna33) gene, complete cds
          Length = 1326

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 161 tcggcggcggcggggccgtct 181
           |||||||||||||||||||||
Sbjct: 161 tcggcggcggcggggccgtct 181
to top
>gb|AF226405.1|AF226405 Neisseria meningitidis strain H44/76 outer membrane lipoprotein
           GNA33 (gna33) gene, complete cds
          Length = 1326

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 161 tcggcggcggcggggccgtct 181
           |||||||||||||||||||||
Sbjct: 161 tcggcggcggcggggccgtct 181
to top
>gb|AF226401.1|AF226401 Neisseria meningitidis strain BZ83 outer membrane lipoprotein GNA33
           (gna33) gene, complete cds
          Length = 1326

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 161 tcggcggcggcggggccgtct 181
           |||||||||||||||||||||
Sbjct: 161 tcggcggcggcggggccgtct 181
to top
>gb|AF226400.1|AF226400 Neisseria meningitidis strain BZ232 outer membrane lipoprotein
           GNA33 (gna33) gene, complete cds
          Length = 1326

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 161 tcggcggcggcggggccgtct 181
           |||||||||||||||||||||
Sbjct: 161 tcggcggcggcggggccgtct 181
to top
>gb|AF226399.1|AF226399 Neisseria meningitidis strain BZ198 outer membrane lipoprotein
           GNA33 (gna33) gene, complete cds
          Length = 1326

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 161 tcggcggcggcggggccgtct 181
           |||||||||||||||||||||
Sbjct: 161 tcggcggcggcggggccgtct 181
to top
>gb|AF226398.1|AF226398 Neisseria meningitidis strain BZ169 outer membrane lipoprotein
           GNA33 (gna33) gene, complete cds
          Length = 1326

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 161 tcggcggcggcggggccgtct 181
           |||||||||||||||||||||
Sbjct: 161 tcggcggcggcggggccgtct 181
to top
>gb|AF226397.1|AF226397 Neisseria meningitidis strain BZ147 outer membrane lipoprotein
           GNA33 (gna33) gene, complete cds
          Length = 1326

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 161 tcggcggcggcggggccgtct 181
           |||||||||||||||||||||
Sbjct: 161 tcggcggcggcggggccgtct 181
to top
>gb|AF226391.1|AF226391 Neisseria meningitidis strain 528 outer membrane lipoprotein GNA33
           (gna33) gene, complete cds
          Length = 1326

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 161 tcggcggcggcggggccgtct 181
           |||||||||||||||||||||
Sbjct: 161 tcggcggcggcggggccgtct 181
to top
>gb|AF226390.1|AF226390 Neisseria meningitidis strain 2996 outer membrane lipoprotein GNA33
           (gna33) gene, complete cds
          Length = 1326

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 161 tcggcggcggcggggccgtct 181
           |||||||||||||||||||||
Sbjct: 161 tcggcggcggcggggccgtct 181
to top
>gb|AF226387.1|AF226387 Neisseria meningitidis strain 1000 outer membrane lipoprotein GNA33
           (gna33) gene, complete cds
          Length = 1326

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 161 tcggcggcggcggggccgtct 181
           |||||||||||||||||||||
Sbjct: 161 tcggcggcggcggggccgtct 181
to top
>dbj|AK102397.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092H08, full
           insert sequence
          Length = 857

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 162 cggcggcggcggggccgtctcctccttcc 190
           |||||||||||| | ||||||||||||||
Sbjct: 36  cggcggcggcggcggcgtctcctccttcc 8
to top
>dbj|AK062161.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B02, full
           insert sequence
          Length = 981

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 162 cggcggcggcggggccgtctcctccttcc 190
           |||||||||||| | ||||||||||||||
Sbjct: 47  cggcggcggcggcggcgtctcctccttcc 19
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 174     ggccgtctcctccttcccctc 194
               |||||||||||||||||||||
Sbjct: 4434764 ggccgtctcctccttcccctc 4434784
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 120     cgccgccgccggacggcgtcgccgg 144
               ||||||||||||||| |||||||||
Sbjct: 3691960 cgccgccgccggacgccgtcgccgg 3691936
to top
>emb|AL596123.32| Mouse DNA sequence from clone RP23-94N18 on chromosome 11, complete
              sequence
          Length = 165196

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 225    ggcgggagctcggccggcggctacg 249
              ||||||||||||||||| |||||||
Sbjct: 140074 ggcgggagctcggccgggggctacg 140098
to top
>gb|BC025467.1| Mus musculus AE binding protein 2, mRNA (cDNA clone IMAGE:5351959)
          Length = 3752

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 cgcctcctctcgccgccgcc 129
           ||||||||||||||||||||
Sbjct: 184 cgcctcctctcgccgccgcc 165
to top
>ref|XM_483039.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 351

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 107 ccacgcctcctctcgccgccgccg 130
           ||||||| ||||||||||||||||
Sbjct: 14  ccacgccgcctctcgccgccgccg 37
to top
>ref|XM_465206.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 753

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 156 gcggctcggcggcggcgggg 175
           ||||||||||||||||||||
Sbjct: 186 gcggctcggcggcggcgggg 205
to top
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     cagcagcgccgcacccacca 105
              ||||||||||||||||||||
Sbjct: 162677 cagcagcgccgcacccacca 162696
to top
>gb|AC133098.7| Mus musculus BAC clone RP23-336L12 from chromosome 6, complete sequence
          Length = 182955

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   cgcctcctctcgccgccgcc 129
             ||||||||||||||||||||
Sbjct: 30387 cgcctcctctcgccgccgcc 30368
to top
>gb|AC093312.7| Oryza sativa chromosome 3 BAC OSJNBa0095N06 genomic sequence, complete
             sequence
          Length = 152417

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 121   gccgccgccggacggcgtcgccgg 144
             |||||||||||||| |||||||||
Sbjct: 72280 gccgccgccggacgccgtcgccgg 72257
to top
>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 331     cgcccgtccgcgagggcgcg 350
               ||||||||||||||||||||
Sbjct: 2073907 cgcccgtccgcgagggcgcg 2073926



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 87     agcagcgccgcacccaccaaccacgcctcctc 118
              ||||||||||| |||||||||| | |||||||
Sbjct: 411278 agcagcgccgcgcccaccaaccgcccctcctc 411247
to top
>emb|AL607001.4|OSJN00128 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088I22,
            complete sequence
          Length = 164572

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 121  gccgccgccggacggcgtcgccgg 144
            |||||||||||||| |||||||||
Sbjct: 7641 gccgccgccggacgccgtcgccgg 7618
to top
>gb|AE005819.1| Caulobacter crescentus CB15 section 145 of 359 of the complete genome
          Length = 10591

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  ggggcggcgtggcgcgggcc 214
            ||||||||||||||||||||
Sbjct: 1571 ggggcggcgtggcgcgggcc 1552
to top
>gb|AF069773.1|AF069773 Oryza sativa putative type 1a plasma membrane receptor (DD3) mRNA,
           complete cds
          Length = 1203

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 107 ccacgcctcctctcgccgccgccg 130
           ||||||| ||||||||||||||||
Sbjct: 273 ccacgccgcctctcgccgccgccg 296
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 154      gtgcggctcggcggcggcgg 173
                ||||||||||||||||||||
Sbjct: 25647356 gtgcggctcggcggcggcgg 25647337
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 107      ccacgcctcctctcgccgccgccg 130
                ||||||| ||||||||||||||||
Sbjct: 23991907 ccacgccgcctctcgccgccgccg 23991930



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 121     gccgccgccggacggcgtcgccgg 144
               |||||||||||||| |||||||||
Sbjct: 7832445 gccgccgccggacgccgtcgccgg 7832468



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 111     gcctcctctcgccgccgccg 130
               ||||||||||||||||||||
Sbjct: 6309255 gcctcctctcgccgccgccg 6309236
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 110      cgcctcctctcgccgccgcc 129
                ||||||||||||||||||||
Sbjct: 11068608 cgcctcctctcgccgccgcc 11068589
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 112      cctcctctcgccgccgccgg 131
                ||||||||||||||||||||
Sbjct: 26191863 cctcctctcgccgccgccgg 26191882
to top
>gb|AC092291.3| Homo sapiens chromosome 16 clone CTD-2502C11, complete sequence
          Length = 194551

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 380    gagggcacgtggagtggagc 399
              ||||||||||||||||||||
Sbjct: 127053 gagggcacgtggagtggagc 127034
to top
>gb|AC009167.9| Homo sapiens chromosome 16 clone RP11-82O18, complete sequence
          Length = 193633

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 380    gagggcacgtggagtggagc 399
              ||||||||||||||||||||
Sbjct: 188244 gagggcacgtggagtggagc 188263
to top
>dbj|AP003340.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1316_H05
          Length = 105346

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   cctcctctcgccgccgccgg 131
             ||||||||||||||||||||
Sbjct: 97280 cctcctctcgccgccgccgg 97299
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 120     cgccgccgccggacggcgtc 139
               ||||||||||||||||||||
Sbjct: 1329064 cgccgccgccggacggcgtc 1329083
to top
>dbj|AP004376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0481F05
          Length = 139739

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 107   ccacgcctcctctcgccgccgccg 130
             ||||||| ||||||||||||||||
Sbjct: 19307 ccacgccgcctctcgccgccgccg 19330
to top
>dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:OJ1159_D09
          Length = 147770

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 112  cctcctctcgccgccgccgg 131
            ||||||||||||||||||||
Sbjct: 4094 cctcctctcgccgccgccgg 4113
to top
>dbj|AP004229.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1124_E11
          Length = 133524

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   cgcctcctctcgccgccgcc 129
             ||||||||||||||||||||
Sbjct: 51302 cgcctcctctcgccgccgcc 51283
to top
>gb|AC121359.8| Mus musculus chromosome 15, clone RP23-138I21, complete sequence
          Length = 194871

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 390   ggagtggagcgggatggggcatgg 413
             ||||||||| ||||||||||||||
Sbjct: 59602 ggagtggagggggatggggcatgg 59579
to top
>dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1734_E04
          Length = 101439

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   gcctcctctcgccgccgccg 130
             ||||||||||||||||||||
Sbjct: 95392 gcctcctctcgccgccgccg 95373
to top
>dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0419H09
          Length = 143533

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 107    ccacgcctcctctcgccgccgccg 130
              ||||||| ||||||||||||||||
Sbjct: 125058 ccacgccgcctctcgccgccgccg 125081
to top
>emb|BX548169.4| Pig DNA sequence from clone XX-548A10, complete sequence
          Length = 101248

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   cctcctctcgccgccgccgg 131
             ||||||||||||||||||||
Sbjct: 32620 cctcctctcgccgccgccgg 32639
to top
>dbj|AP005517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0090H20
          Length = 132628

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 121   gccgccgccggacggcgtcgccgg 144
             |||||||||||||| |||||||||
Sbjct: 63732 gccgccgccggacgccgtcgccgg 63755
to top
>dbj|AP005410.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0038P10
          Length = 148527

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 121   gccgccgccggacggcgtcgccgg 144
             |||||||||||||| |||||||||
Sbjct: 22336 gccgccgccggacgccgtcgccgg 22359
to top
>gb|AC119264.8| Mus musculus chromosome 15, clone RP24-289J12, complete sequence
          Length = 163578

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 390    ggagtggagcgggatggggcatgg 413
              ||||||||| ||||||||||||||
Sbjct: 138165 ggagtggagggggatggggcatgg 138142
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 152     ccgtgcggctcggcggcggc 171
               ||||||||||||||||||||
Sbjct: 2772554 ccgtgcggctcggcggcggc 2772573
to top
>dbj|AP003053.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0047B08
          Length = 57846

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   cctcctctcgccgccgccgg 131
             ||||||||||||||||||||
Sbjct: 32993 cctcctctcgccgccgccgg 33012
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 154      gtgcggctcggcggcggcgg 173
                ||||||||||||||||||||
Sbjct: 25575532 gtgcggctcggcggcggcgg 25575513
to top
>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 167131

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   gtgcggctcggcggcggcgg 173
             ||||||||||||||||||||
Sbjct: 14594 gtgcggctcggcggcggcgg 14575
to top
>emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa0036L12 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 127003

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   gtgcggctcggcggcggcgg 173
             ||||||||||||||||||||
Sbjct: 26362 gtgcggctcggcggcggcgg 26381
to top
>emb|AJ867816.2| Uncultured nematode partial 18S rRNA gene, isolate DGGE band Env1
          Length = 399

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 135 gcgtcgccgggcaaagcccgtgcg 158
           |||||||||||||||| |||||||
Sbjct: 259 gcgtcgccgggcaaagaccgtgcg 236


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,020,487
Number of Sequences: 3902068
Number of extensions: 4020487
Number of successful extensions: 98052
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94297
Number of HSP's gapped (non-prelim): 3755
length of query: 517
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 494
effective length of database: 17,143,297,704
effective search space: 8468789065776
effective search space used: 8468789065776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top