ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart22c08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121440.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140L10, full insert sequence Length = 1466 Score = 264 bits (133), Expect = 3e-67 Identities = 229/261 (87%) Strand = Plus / Plus Query: 322 gtcggacaacaccaaggggctggcgctggcggtcgcctccagcgccttcatcggcgccag 381 |||||||||||| |||||| |||||||||| || ||||||||||||||||||||||| Sbjct: 222 gtcggacaacacggtggggctttcgctggcggtggcgtccagcgccttcatcggcgccag 281 Query: 382 cttcatcctcaagaagatcggcctcatgcgcgccggcaagtgcggcgtccgcgcaggcgg 441 ||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| || Sbjct: 282 cttcatcctcaagaagatcggactcatccgcgccggcaagggcggcgtccgcgcaggtgg 341 Query: 442 aggaggatacacgtatcttctggagcctctctggtgggctggcttgatcaccatgctgct 501 ||||||||||| |||||| |||| ||||| ||||||||||| |||| || ||| |||| Sbjct: 342 tggaggatacacttatcttttggaacctctatggtgggctggaatgatgacaatgttgct 401 Query: 502 tggggaggttgcgaactttgttgcctatgtctttgcaccagctgtccttgtgactcctct 561 ||||||| | || ||||| ||||| ||| |||||||||||| || ||||||||||| || Sbjct: 402 tggggagatagcaaacttcgttgcttatacctttgcaccagccgtacttgtgactcccct 461 Query: 562 tggagcactaagcataatcgt 582 ||| ||||||||||||||||| Sbjct: 462 tggggcactaagcataatcgt 482
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 153 bits (77), Expect = 8e-34 Identities = 107/117 (91%) Strand = Plus / Minus Query: 322 gtcggacaacaccaaggggctggcgctggcggtcgcctccagcgccttcatcggcgccag 381 |||||||||||| |||||| |||||||||| || ||||||||||||||||||||||| Sbjct: 29870769 gtcggacaacacggtggggctttcgctggcggtggcgtccagcgccttcatcggcgccag 29870710 Query: 382 cttcatcctcaagaagatcggcctcatgcgcgccggcaagtgcggcgtccgcgcagg 438 ||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| Sbjct: 29870709 cttcatcctcaagaagatcggactcatccgcgccggcaagggcggcgtccgcgcagg 29870653 Score = 81.8 bits (41), Expect = 2e-12 Identities = 74/85 (87%) Strand = Plus / Minus Query: 498 tgcttggggaggttgcgaactttgttgcctatgtctttgcaccagctgtccttgtgactc 557 ||||||||||| | || ||||| ||||| ||| |||||||||||| || |||||||||| Sbjct: 29869770 tgcttggggagatagcaaacttcgttgcttatacctttgcaccagccgtacttgtgactc 29869711 Query: 558 ctcttggagcactaagcataatcgt 582 | ||||| ||||||||||||||||| Sbjct: 29869710 cccttggggcactaagcataatcgt 29869686 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Minus Query: 443 ggaggatacacgtatcttctggagcctctctggtgggctgg 483 ||||||||||| |||||| |||| ||||| ||||||||||| Sbjct: 29869909 ggaggatacacttatcttttggaacctctatggtgggctgg 29869869
>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0481E08 Length = 171965 Score = 153 bits (77), Expect = 8e-34 Identities = 107/117 (91%) Strand = Plus / Minus Query: 322 gtcggacaacaccaaggggctggcgctggcggtcgcctccagcgccttcatcggcgccag 381 |||||||||||| |||||| |||||||||| || ||||||||||||||||||||||| Sbjct: 66282 gtcggacaacacggtggggctttcgctggcggtggcgtccagcgccttcatcggcgccag 66223 Query: 382 cttcatcctcaagaagatcggcctcatgcgcgccggcaagtgcggcgtccgcgcagg 438 ||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| Sbjct: 66222 cttcatcctcaagaagatcggactcatccgcgccggcaagggcggcgtccgcgcagg 66166 Score = 81.8 bits (41), Expect = 2e-12 Identities = 74/85 (87%) Strand = Plus / Minus Query: 498 tgcttggggaggttgcgaactttgttgcctatgtctttgcaccagctgtccttgtgactc 557 ||||||||||| | || ||||| ||||| ||| |||||||||||| || |||||||||| Sbjct: 65283 tgcttggggagatagcaaacttcgttgcttatacctttgcaccagccgtacttgtgactc 65224 Query: 558 ctcttggagcactaagcataatcgt 582 | ||||| ||||||||||||||||| Sbjct: 65223 cccttggggcactaagcataatcgt 65199 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Minus Query: 443 ggaggatacacgtatcttctggagcctctctggtgggctgg 483 ||||||||||| |||||| |||| ||||| ||||||||||| Sbjct: 65422 ggaggatacacttatcttttggaacctctatggtgggctgg 65382
>ref|XM_463526.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1779 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 326 gacaacaccaaggggctggcgctggcggtcgcctccagcgccttcatcggcgccagcttc 385 ||||||| ||||||||||| ||| ||| || |||||||| ||||||||||||||||||| Sbjct: 73 gacaacatcaaggggctggtgctagcgctctcctccagcttcttcatcggcgccagcttc 132 Query: 386 atcctcaagaaga 398 ||| ||||||||| Sbjct: 133 atcgtcaagaaga 145
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 326 gacaacaccaaggggctggcgctggcggtcgcctccagcgccttcatcggcgccagcttc 385 ||||||| ||||||||||| ||| ||| || |||||||| ||||||||||||||||||| Sbjct: 38293684 gacaacatcaaggggctggtgctagcgctctcctccagcttcttcatcggcgccagcttc 38293743 Query: 386 atcctcaagaaga 398 ||| ||||||||| Sbjct: 38293744 atcgtcaagaaga 38293756 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 353 gtcgcctccagcgccttcatcggcgccagcttcatcctcaagaaga 398 ||||||||| |||||||||||| | |||||||||| ||||||||| Sbjct: 37881145 gtcgcctcctccgccttcatcggggtcagcttcatcgtcaagaaga 37881190 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 cgcctcccctgtccctctcgc 36 ||||||||||||||||||||| Sbjct: 26304666 cgcctcccctgtccctctcgc 26304686
>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065E10 Length = 183580 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 326 gacaacaccaaggggctggcgctggcggtcgcctccagcgccttcatcggcgccagcttc 385 ||||||| ||||||||||| ||| ||| || |||||||| ||||||||||||||||||| Sbjct: 54509 gacaacatcaaggggctggtgctagcgctctcctccagcttcttcatcggcgccagcttc 54568 Query: 386 atcctcaagaaga 398 ||| ||||||||| Sbjct: 54569 atcgtcaagaaga 54581
>dbj|AK102845.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110A12, full insert sequence Length = 1821 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 326 gacaacaccaaggggctggcgctggcggtcgcctccagcgccttcatcggcgccagcttc 385 ||||||| ||||||||||| ||| ||| || |||||||| ||||||||||||||||||| Sbjct: 428 gacaacatcaaggggctggtgctagcgctctcctccagcttcttcatcggcgccagcttc 487 Query: 386 atcctcaagaaga 398 ||| ||||||||| Sbjct: 488 atcgtcaagaaga 500
>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02, complete sequence Length = 125650 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 346 gctggcggtcgcctccagcgccttcatcggcgccagcttcatcctcaagaagatcggcct 405 ||||||| || |||||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct: 88419 gctggcgctctcctccagcctcttcatcggcgccagcttcatcgtcaagaagaagggcct 88360 Query: 406 ca 407 || Sbjct: 88359 ca 88358
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 346 gctggcggtcgcctccagcgccttcatcggcgccagcttcatcctcaagaagatcggcct 405 ||||||| || |||||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct: 20666379 gctggcgctctcctccagcctcttcatcggcgccagcttcatcgtcaagaagaagggcct 20666320 Query: 406 ca 407 || Sbjct: 20666319 ca 20666318 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 358 ctccagcgccttcatcggcgccagcttcatcctcaagaaga 398 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 25258603 ctccagcggcttcatcggcgccagcttcatcatcaagaaga 25258643 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Plus Query: 548 cttgtgactcctcttggagcactaagcataat 579 ||||| ||||||||||||||||| |||||||| Sbjct: 25258976 cttgttactcctcttggagcactgagcataat 25259007 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 461 ctggagcctctctggtgggctggcttgatcacca 494 ||||||||||| ||||||| |||| ||||||||| Sbjct: 25258790 ctggagcctctatggtgggttggcatgatcacca 25258823
>dbj|AK121054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055P22, full insert sequence Length = 1972 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 346 gctggcggtcgcctccagcgccttcatcggcgccagcttcatcctcaagaagatcggcct 405 ||||||| || |||||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct: 595 gctggcgctctcctccagcctcttcatcggcgccagcttcatcgtcaagaagaagggcct 654 Query: 406 ca 407 || Sbjct: 655 ca 656
>gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1155G07, complete sequence Length = 146712 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 358 ctccagcgccttcatcggcgccagcttcatcctcaagaaga 398 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 121444 ctccagcggcttcatcggcgccagcttcatcatcaagaaga 121484 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Plus Query: 548 cttgtgactcctcttggagcactaagcataat 579 ||||| ||||||||||||||||| |||||||| Sbjct: 121817 cttgttactcctcttggagcactgagcataat 121848 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 461 ctggagcctctctggtgggctggcttgatcacca 494 ||||||||||| ||||||| |||| ||||||||| Sbjct: 121631 ctggagcctctatggtgggttggcatgatcacca 121664
>ref|XM_475706.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1065 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 358 ctccagcgccttcatcggcgccagcttcatcctcaagaaga 398 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 72 ctccagcggcttcatcggcgccagcttcatcatcaagaaga 112 Score = 56.0 bits (28), Expect = 1e-04 Identities = 124/156 (79%) Strand = Plus / Plus Query: 424 cggcgtccgcgcaggcggaggaggatacacgtatcttctggagcctctctggtgggctgg 483 |||| |||||||||| | || || ||| |||| || ||||||||||| ||||||| ||| Sbjct: 141 cggcatccgcgcaggggttggtgggtactcgtacctcctggagcctctatggtgggttgg 200 Query: 484 cttgatcaccatgctgcttggggaggttgcgaactttgttgcctatgtctttgcaccagc 543 | ||||||||||| | | || || ||||| || || || || || | ||| || || || Sbjct: 201 catgatcaccatgattgtgggagaagttgccaatttcgtcgcatacgccttcgctcccgc 260 Query: 544 tgtccttgtgactcctcttggagcactaagcataat 579 || ||||| ||||||||||||||||| |||||||| Sbjct: 261 ggttcttgttactcctcttggagcactgagcataat 296
>dbj|AK121638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052K11, full insert sequence Length = 1916 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 358 ctccagcgccttcatcggcgccagcttcatcctcaagaaga 398 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 315 ctccagcggcttcatcggcgccagcttcatcatcaagaaga 355 Score = 56.0 bits (28), Expect = 1e-04 Identities = 124/156 (79%) Strand = Plus / Plus Query: 424 cggcgtccgcgcaggcggaggaggatacacgtatcttctggagcctctctggtgggctgg 483 |||| |||||||||| | || || ||| |||| || ||||||||||| ||||||| ||| Sbjct: 384 cggcatccgcgcaggggttggtgggtactcgtacctcctggagcctctatggtgggttgg 443 Query: 484 cttgatcaccatgctgcttggggaggttgcgaactttgttgcctatgtctttgcaccagc 543 | ||||||||||| | | || || ||||| || || || || || | ||| || || || Sbjct: 444 catgatcaccatgattgtgggagaagttgccaatttcgtcgcatacgccttcgctcccgc 503 Query: 544 tgtccttgtgactcctcttggagcactaagcataat 579 || ||||| ||||||||||||||||| |||||||| Sbjct: 504 ggttcttgttactcctcttggagcactgagcataat 539
>dbj|AK069309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012B05, full insert sequence Length = 1675 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 358 ctccagcgccttcatcggcgccagcttcatcctcaagaaga 398 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 269 ctccagcggcttcatcggcgccagcttcatcatcaagaaga 309 Score = 56.0 bits (28), Expect = 1e-04 Identities = 124/156 (79%) Strand = Plus / Plus Query: 424 cggcgtccgcgcaggcggaggaggatacacgtatcttctggagcctctctggtgggctgg 483 |||| |||||||||| | || || ||| |||| || ||||||||||| ||||||| ||| Sbjct: 338 cggcatccgcgcaggggttggtgggtactcgtacctcctggagcctctatggtgggttgg 397 Query: 484 cttgatcaccatgctgcttggggaggttgcgaactttgttgcctatgtctttgcaccagc 543 | ||||||||||| | | || || ||||| || || || || || | ||| || || || Sbjct: 398 catgatcaccatgattgtgggagaagttgccaatttcgtcgcatacgccttcgctcccgc 457 Query: 544 tgtccttgtgactcctcttggagcactaagcataat 579 || ||||| ||||||||||||||||| |||||||| Sbjct: 458 ggttcttgttactcctcttggagcactgagcataat 493
>gb|AY107039.1| Zea mays PCO071030 mRNA sequence Length = 934 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 324 cggacaacaccaaggggctggcgctggcggtcgcctccagcgccttcatcggcgccagct 383 |||| |||| |||||| |||| ||| ||| || |||||||| ||||||||||||||||| Sbjct: 389 cggataacatcaagggcctggtgctcgcgctctcctccagcctcttcatcggcgccagct 448 Query: 384 tcatcctcaagaaga 398 |||| ||||||||| Sbjct: 449 tcattatcaagaaga 463
>gb|AC139170.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0058P12, complete sequence Length = 173073 Score = 60.0 bits (30), Expect = 9e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 326 gacaacaccaaggggctggcgctggcggtcgcctccagcgccttcatcggcgccagcttc 385 |||||| |||||||||||| || ||||| | || |||||||||||||| || |||||| Sbjct: 153345 gacaacgccaaggggctggtcctcgcggtgtcgtcgagcgccttcatcggggcgagcttc 153404 Query: 386 atcctcaagaagat 399 ||| |||||||||| Sbjct: 153405 atcgtcaagaagat 153418
>ref|XM_420186.1| PREDICTED: Gallus gallus similar to hypothetical protein (LOC422191), mRNA Length = 1014 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 337 ggggctggcgctggcggtcgcctccagcgccttcatcggcgccagcttcatcctcaagaa 396 |||||||| |||||| | || ||||||||||||||||| | |||||||||||| ||||| Sbjct: 36 ggggctggggctggctttggcttccagcgccttcatcgggggcagcttcatcctgaagaa 95 Query: 397 ga 398 || Sbjct: 96 ga 97
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 60.0 bits (30), Expect = 9e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 326 gacaacaccaaggggctggcgctggcggtcgcctccagcgccttcatcggcgccagcttc 385 |||||| |||||||||||| || ||||| | || |||||||||||||| || |||||| Sbjct: 4841548 gacaacgccaaggggctggtcctcgcggtgtcgtcgagcgccttcatcggggcgagcttc 4841489 Query: 386 atcctcaagaagat 399 ||| |||||||||| Sbjct: 4841488 atcgtcaagaagat 4841475
>dbj|AK120356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067B07, full insert sequence Length = 4790 Score = 60.0 bits (30), Expect = 9e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 326 gacaacaccaaggggctggcgctggcggtcgcctccagcgccttcatcggcgccagcttc 385 |||||| |||||||||||| || ||||| | || |||||||||||||| || |||||| Sbjct: 191 gacaacgccaaggggctggtcctcgcggtgtcgtcgagcgccttcatcggggcgagcttc 250 Query: 386 atcctcaagaagat 399 ||| |||||||||| Sbjct: 251 atcgtcaagaagat 264
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 60.0 bits (30), Expect = 9e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 326 gacaacaccaaggggctggcgctggcggtcgcctccagcgccttcatcggcgccagcttc 385 |||||| |||||||||||| || ||||| | || |||||||||||||| || |||||| Sbjct: 4860332 gacaacgccaaggggctggtcctcgcggtgtcgtcgagcgccttcatcggggcgagcttc 4860273 Query: 386 atcctcaagaagat 399 ||| |||||||||| Sbjct: 4860272 atcgtcaagaagat 4860259
>dbj|AK073285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027O22, full insert sequence Length = 1316 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 368 ttcatcggcgccagcttcatcctcaagaagatcggcctca 407 ||||||||||||||||||||| ||||||||| ||||||| Sbjct: 128 ttcatcggcgccagcttcatcatcaagaagaagggcctca 167
>ref|XM_463503.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 969 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 353 gtcgcctccagcgccttcatcggcgccagcttcatcctcaagaaga 398 ||||||||| |||||||||||| | |||||||||| ||||||||| Sbjct: 196 gtcgcctcctccgccttcatcggggtcagcttcatcgtcaagaaga 241
>dbj|AP004669.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0491F11 Length = 152274 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 353 gtcgcctccagcgccttcatcggcgccagcttcatcctcaagaaga 398 ||||||||| |||||||||||| | |||||||||| ||||||||| Sbjct: 102501 gtcgcctcctccgccttcatcggggtcagcttcatcgtcaagaaga 102546
>dbj|AK103484.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130L04, full insert sequence Length = 1683 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 353 gtcgcctccagcgccttcatcggcgccagcttcatcctcaagaaga 398 ||||||||| |||||||||||| | |||||||||| ||||||||| Sbjct: 263 gtcgcctcctccgccttcatcggggtcagcttcatcgtcaagaaga 308
>dbj|AP003566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0008G24 Length = 152736 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 353 gtcgcctccagcgccttcatcggcgccagcttcatcctcaagaaga 398 ||||||||| |||||||||||| | |||||||||| ||||||||| Sbjct: 140393 gtcgcctcctccgccttcatcggggtcagcttcatcgtcaagaaga 140438
>ref|XM_512217.1| PREDICTED: Pan troglodytes LOC455529 (LOC455529), mRNA Length = 15756 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 419 aagtgcggcgtccgcgcaggcggaggag 446 ||||| |||||||||||||||||||||| Sbjct: 13721 aagtggggcgtccgcgcaggcggaggag 13694 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 419 aagtgcggcgtccgcgcaggcggaggag 446 ||||| ||||||||||||||||| |||| Sbjct: 13653 aagtggggcgtccgcgcaggcggcggag 13626 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 419 aagtgcggcgtccgcgcaggcggaggag 446 ||||| ||||||||||||||||| |||| Sbjct: 13551 aagtggggcgtccgcgcaggcggcggag 13524
>gb|AC083806.16| Homo sapiens 12q BAC RP11-240G22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164461 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 461 ctggagcctctctggtgggctggctt 486 ||||||| |||||||||||||||||| Sbjct: 146879 ctggagcatctctggtgggctggctt 146904
>gb|AC115795.11| Mus musculus chromosome 5, clone RP23-400O10, complete sequence Length = 207103 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 170 aggcacgcgccaccaccggcggctc 194 ||||| ||||||||||||||||||| Sbjct: 166831 aggcatgcgccaccaccggcggctc 166855
>ref|NM_192376.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 363 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 cgcctcccctgtccctctcgc 36 ||||||||||||||||||||| Sbjct: 90 cgcctcccctgtccctctcgc 70
>ref|XM_469208.1| Oryza sativa (japonica cultivar-group), mRNA Length = 819 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 367 cttcatcggcgccagcttcatcctc 391 |||||||||| |||||||||||||| Sbjct: 715 cttcatcggcaccagcttcatcctc 691
>gb|AC145388.2| Oryza sativa chromosome 3 BAC OSJNBb0036M02 genomic sequence, complete sequence Length = 125380 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 367 cttcatcggcgccagcttcatcctc 391 |||||||||| |||||||||||||| Sbjct: 14882 cttcatcggcaccagcttcatcctc 14906
>ref|XM_426339.1| PREDICTED: Gallus gallus similar to hypothetical protein LOC152519 (LOC428783), mRNA Length = 1479 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 515 aactttgttgcctatgtctttgcaccagc 543 ||||||| |||||||| |||||||||||| Sbjct: 643 aactttgctgcctatgcctttgcaccagc 671
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 367 cttcatcggcgccagcttcatcctc 391 |||||||||| |||||||||||||| Sbjct: 26088204 cttcatcggcaccagcttcatcctc 26088180
>gb|AC133930.4| Oryza sativa chromosome 3 BAC OSJNBa0039O18 genomic sequence, complete sequence Length = 139187 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 367 cttcatcggcgccagcttcatcctc 391 |||||||||| |||||||||||||| Sbjct: 68346 cttcatcggcaccagcttcatcctc 68370
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 367 cttcatcggcgccagcttcatcctc 391 |||||||||| |||||||||||||| Sbjct: 26179513 cttcatcggcaccagcttcatcctc 26179489
>gb|AC119977.18| Mus musculus chromosome 5, clone RP24-486F14, complete sequence Length = 151580 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 170 aggcacgcgccaccaccggcggctc 194 ||||| ||||||||||||||||||| Sbjct: 139462 aggcatgcgccaccaccggcggctc 139438
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 328 caacaccaaggggctggcgctggcg 352 ||||||||||||| ||||||||||| Sbjct: 6552523 caacaccaagggggtggcgctggcg 6552499
>dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1159_D09 Length = 147770 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 cgcctcccctgtccctctcgc 36 ||||||||||||||||||||| Sbjct: 117347 cgcctcccctgtccctctcgc 117367
>dbj|AK108369.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-D06, full insert sequence Length = 1161 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 367 cttcatcggcgccagcttcatcctc 391 |||||||||| |||||||||||||| Sbjct: 803 cttcatcggcaccagcttcatcctc 779
>dbj|AK059784.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-D06, full insert sequence Length = 948 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 cgcctcccctgtccctctcgc 36 ||||||||||||||||||||| Sbjct: 718 cgcctcccctgtccctctcgc 738
>dbj|AP006730.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT45B09, TM0885b, complete sequence Length = 44466 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 cttcatcggcgccagcttcat 387 ||||||||||||||||||||| Sbjct: 20934 cttcatcggcgccagcttcat 20914
>gb|AY650322.1| Macaca fascicularis nestin mRNA, complete cds Length = 4665 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 ggaggcccgcggtgcggcgcgggg 244 |||||||||||| ||||||||||| Sbjct: 506 ggaggcccgcggggcggcgcgggg 483
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ccaaggggctggcgctggcg 352 |||||||||||||||||||| Sbjct: 3597953 ccaaggggctggcgctggcg 3597934
>gb|DQ176871.1| Streptomyces aureofaciens strain Tu117 lipomycin biosynthesis gene cluster, complete sequence Length = 66871 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 64 cgaccgggccgccggccggcgggc 87 ||||||| |||||||||||||||| Sbjct: 13438 cgaccggtccgccggccggcgggc 13461
>ref|NM_006617.1| Homo sapiens nestin (NES), mRNA Length = 5591 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 ggaggcccgcggtgcggcgcgggg 244 |||||||||||| ||||||||||| Sbjct: 639 ggaggcccgcggggcggcgcgggg 616
>gb|BT012745.1| Lycopersicon esculentum clone 113684R, mRNA sequence Length = 2208 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 521 gttgcctatgtctttgcaccagct 544 ||||||||||| |||||||||||| Sbjct: 1418 gttgcctatgtttttgcaccagct 1441
>gb|BC032580.1| Homo sapiens nestin, mRNA (cDNA clone IMAGE:5493839), containing frame-shift errors Length = 1880 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 ggaggcccgcggtgcggcgcgggg 244 |||||||||||| ||||||||||| Sbjct: 614 ggaggcccgcggggcggcgcgggg 591
>gb|DQ459071.1| Sorghum bicolor cultivar BTx623 clone BAC c0156b06, complete sequence Length = 112592 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 ccaccaccggcggctcctcc 198 |||||||||||||||||||| Sbjct: 88147 ccaccaccggcggctcctcc 88166
>gb|AY232247.1| Drosophila yakuba clone yak-ad_CG12292 mRNA sequence Length = 495 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 367 cttcatcggcgccagcttcatcctcaagaaga 398 ||||||||| ||||||||||| ||||||||| Sbjct: 165 cttcatcggttccagcttcatcatcaagaaga 196
>gb|AY165002.1| Pigmentiphaga kullae aerobic azoreductase (azoA) gene, complete cds Length = 11821 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 cacgaccgggccgccggccggcgg 85 |||||||||||||| ||||||||| Sbjct: 3149 cacgaccgggccgcgggccggcgg 3172
>emb|CR662937.2|CNS0FAHR Tetraodon nigroviridis full-length cDNA Length = 1466 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 ccaccggcggctcctcctgcttcc 205 |||||||||||||||||| ||||| Sbjct: 758 ccaccggcggctcctccttcttcc 781
>emb|AL590666.8| Human DNA sequence from clone RP11-66D17 on chromosome 1 Contains the 3' end of the SH2D2A gene for SH2 domain protein 2A, the PRCC gene for papillary renal cell carcinoma (translocation-associated), the HDGF gene for hepatoma-derived growth factor (high-mobility group protein 1-like), the MRPL24 gene for mitochondrial ribosomal protein L24, the gene for CGI-41 protein (CGI-41), a novel gene (FLJ12671), a novel gene, the CRABP2 gene for cellular retinoic acid binding protein 2, a novel gene, the gene for NES nestin, the 5' end of a novel gene, the 3' end of the BCAN gene for brevican and 5 CpG islands, complete sequence Length = 160597 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 ggaggcccgcggtgcggcgcgggg 244 |||||||||||| ||||||||||| Sbjct: 25384 ggaggcccgcggggcggcgcgggg 25407
>emb|AL109924.20|HSDJ495K2 Human DNA sequence from clone RP3-495K2 on chromosome 6q26-27 Contains three novel genes and two CpG islands, complete sequence Length = 130296 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 tctggagcctctctggtggg 479 |||||||||||||||||||| Sbjct: 77914 tctggagcctctctggtggg 77933
>emb|BX058907.1|CNS09HM7 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC39CB05 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 885 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 acggacgagacaagcgcgcg 152 |||||||||||||||||||| Sbjct: 213 acggacgagacaagcgcgcg 232
>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16 Length = 347786 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 53 agcagcacccacgaccgggccgcc 76 |||||||||||||||| ||||||| Sbjct: 75293 agcagcacccacgacctggccgcc 75270
>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14 Length = 349146 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 53 agcagcacccacgaccgggccgcc 76 |||||||||||||||| ||||||| Sbjct: 79246 agcagcacccacgacctggccgcc 79223
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 53 agcagcacccacgaccgggccgcc 76 |||||||||||||||| ||||||| Sbjct: 233690 agcagcacccacgacctggccgcc 233713
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29 Length = 276800 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 gtccgcgcaggcggaggagg 447 |||||||||||||||||||| Sbjct: 77506 gtccgcgcaggcggaggagg 77525
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 gctggcggtcgcctccagcg 365 |||||||||||||||||||| Sbjct: 4975179 gctggcggtcgcctccagcg 4975160
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 394 gaagatcggcctcatgcgcgccggcaag 421 |||||||||||| ||||||| ||||||| Sbjct: 2196214 gaagatcggcctgatgcgcgacggcaag 2196241
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 accgggccgccggccggcgggcgg 89 ||||||||||| |||||||||||| Sbjct: 2049289 accgggccgcccgccggcgggcgg 2049312
>tpg|BK001125.1| TPA: TPA_exp: Silurana tropicalis non-imprinted in Prader-Willi/Angelman syndrome 2 mRNA, complete cds Length = 1978 Score = 40.1 bits (20), Expect = 7.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 509 gttgcgaactttgttgcctatgtctttgcaccagct 544 ||||| ||||||| ||| |||| ||||||||||||| Sbjct: 484 gttgcaaactttgctgcatatgcctttgcaccagct 519
>ref|NM_001011172.2| Xenopus tropicalis hypothetical LOC496590 (LOC496590), mRNA Length = 1978 Score = 40.1 bits (20), Expect = 7.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 509 gttgcgaactttgttgcctatgtctttgcaccagct 544 ||||| ||||||| ||| |||| ||||||||||||| Sbjct: 484 gttgcaaactttgctgcatatgcctttgcaccagct 519
>gb|BC051373.1| Homo sapiens nestin, mRNA (cDNA clone IMAGE:6671906) Length = 1917 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 ggaggcccgcggtgcggcgcgggg 244 |||||||||||| ||||||||||| Sbjct: 639 ggaggcccgcggggcggcgcgggg 616
>emb|AL136120.8| Human DNA sequence from clone RP5-975D15 on chromosome 1p31.3-32.2 Contains the GADD45A gene for growth arrest and DNA-damage-inducible alpha, the 3' end of the GNG12 gene for guanine nucleotide binding protein (G protein) gamma 12 and a CpG island, complete sequence Length = 104198 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 gaccacaacaataggcggag 108 |||||||||||||||||||| Sbjct: 83950 gaccacaacaataggcggag 83931
>gb|BC084998.1| Xenopus tropicalis hypothetical LOC496590, mRNA (cDNA clone MGC:89560 IMAGE:6993828), complete cds Length = 1786 Score = 40.1 bits (20), Expect = 7.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 509 gttgcgaactttgttgcctatgtctttgcaccagct 544 ||||| ||||||| ||| |||| ||||||||||||| Sbjct: 601 gttgcaaactttgctgcatatgcctttgcaccagct 636
>emb|CR760985.2| Xenopus tropicalis finished cDNA, clone TEgg012j14 Length = 1779 Score = 40.1 bits (20), Expect = 7.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 509 gttgcgaactttgttgcctatgtctttgcaccagct 544 ||||| ||||||| ||| |||| ||||||||||||| Sbjct: 277 gttgcaaactttgctgcatatgcctttgcaccagct 312
>gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, partial genome Length = 189370 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 gctggcgctggcggtcgcct 359 |||||||||||||||||||| Sbjct: 138380 gctggcgctggcggtcgcct 138399 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,929,817 Number of Sequences: 3902068 Number of extensions: 3929817 Number of successful extensions: 94902 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93501 Number of HSP's gapped (non-prelim): 1401 length of query: 584 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 561 effective length of database: 17,143,297,704 effective search space: 9617390011944 effective search space used: 9617390011944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
