Clone Name	bart22c06
Clone Library Name	barley_pub

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No.	Definition	Score (bits)	E Value
1	ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor	132	1e-30
2	ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur...	129	8e-30
3	ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)	125	1e-28
4	ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur...	119	7e-27
5	ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precur...	92	9e-19
6	ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro...	91	2e-18
7	ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec...	91	3e-18
8	ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec...	89	1e-17
9	ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur...	87	5e-17
10	ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur...	85	1e-16
11	ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor	75	2e-13
12	RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch...	74	2e-13
13	CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-r...	60	5e-09
14	CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine...	60	5e-09
15	CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine...	60	5e-09
16	CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine...	60	5e-09
17	CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine...	60	5e-09
18	GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A	59	1e-08
19	RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Co...	59	1e-08
20	RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (He...	59	1e-08
21	CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit...	58	2e-08
22	CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit...	58	2e-08
23	CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit...	58	2e-08
24	GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A	58	2e-08
25	GAR2_SCHPO (P41891) Protein gar2	57	3e-08
26	CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit...	57	3e-08
27	EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (...	57	3e-08
28	NSR1_YEAST (P27476) Nuclear localization sequence-binding protei...	57	3e-08
29	CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit...	57	3e-08
30	CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit...	57	3e-08
31	PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bi...	57	5e-08
32	RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15	57	5e-08
33	EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Emb...	56	7e-08
34	GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2	56	7e-08
35	RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ss...	56	7e-08
36	MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)	56	9e-08
37	MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)	56	9e-08
38	EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (...	56	9e-08
39	PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bind...	56	9e-08
40	PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bi...	56	9e-08
41	GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein	56	9e-08
42	PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-...	56	9e-08
43	RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding ...	55	1e-07
44	GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 pro...	55	1e-07
45	CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine...	55	2e-07
46	PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bi...	55	2e-07
47	PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bi...	55	2e-07
48	RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding ...	55	2e-07
49	RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HS...	55	2e-07
50	PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bi...	55	2e-07
51	GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7	54	3e-07
52	ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (...	54	4e-07
53	CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcrip...	53	6e-07
54	ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimu...	53	8e-07
55	ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 ...	53	8e-07
56	RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-bindin...	53	8e-07
57	GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu...	53	8e-07
58	ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimula...	52	1e-06
59	ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimu...	52	1e-06
60	ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1 (...	52	1e-06
61	PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic a...	52	1e-06
62	SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a...	52	1e-06
63	RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA	52	1e-06
64	ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1 (He...	52	1e-06
65	ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1 (...	52	1e-06
66	ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1 (...	52	1e-06
67	RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 h...	52	1e-06
68	PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-bi...	52	1e-06
69	PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-bi...	52	1e-06
70	PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-bi...	52	1e-06
71	PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-bi...	52	1e-06
72	PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-bi...	52	1e-06
73	PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-bi...	52	1e-06
74	RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 h...	52	1e-06
75	ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimu...	52	1e-06
76	RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 h...	52	1e-06
77	PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi...	52	1e-06
78	HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hn...	52	2e-06
79	PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-...	52	2e-06
80	HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (...	52	2e-06
81	HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (...	52	2e-06
82	ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/...	51	2e-06
83	ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalo...	51	2e-06
84	ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/...	51	2e-06
85	DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in azoosp...	51	2e-06
86	GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10	51	2e-06
87	ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encepha...	51	2e-06
88	ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encepha...	51	2e-06
89	YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 i...	51	2e-06
90	DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in azoosp...	51	3e-06
91	ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)	51	3e-06
92	ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2	51	3e-06
93	ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	51	3e-06
94	PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-bi...	51	3e-06
95	ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (...	51	3e-06
96	PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-bindi...	51	3e-06
97	ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	51	3e-06
98	ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1 (...	51	3e-06
99	ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hn...	51	3e-06
100	ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (...	51	3e-06
101	ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)	50	4e-06
102	RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif p...	50	5e-06
103	GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein ...	50	5e-06
104	DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in azoosp...	50	5e-06
105	FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing ...	50	6e-06
106	ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (E...	49	8e-06
107	ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)	49	8e-06
108	ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (P...	49	8e-06
109	GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochon...	49	8e-06
110	YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5	49	8e-06
111	HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4...	49	8e-06
112	HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (...	49	1e-05
113	RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif p...	49	1e-05
114	ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visu...	49	1e-05
115	ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visu...	49	1e-05
116	RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro...	49	1e-05
117	PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g...	49	1e-05
118	RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 h...	48	2e-05
119	CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (C...	48	2e-05
120	CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (C...	48	2e-05
121	SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2	48	2e-05
122	RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C...	48	2e-05
123	SAFB2_HUMAN (Q14151) Scaffold attachment factor B2	48	2e-05
124	A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1	47	3e-05
125	A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1	47	3e-05
126	SAP49_SCHPO (O14102) Spliceosome-associated protein 49	47	4e-05
127	PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b...	47	4e-05
128	RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif pro...	47	4e-05
129	RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial pre...	47	4e-05
130	MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote...	47	4e-05
131	RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif pro...	47	5e-05
132	SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attach...	47	5e-05
133	SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold atta...	47	5e-05
134	RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-ri...	46	7e-05
135	BOLL_MACFA (Q8WP23) Protein boule-like	46	7e-05
136	BOLL_HUMAN (Q8N9W6) Protein boule-like	46	7e-05
137	YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 i...	46	9e-05
138	ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, ...	46	9e-05
139	BOLL_MOUSE (Q924M5) Protein boule-like	46	9e-05
140	RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif p...	45	1e-04
141	PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bi...	45	2e-04
142	HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (...	45	2e-04
143	HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hn...	45	2e-04
144	HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)	45	2e-04
145	HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (...	45	2e-04
146	NUCL_XENLA (P20397) Nucleolin (Protein C23)	45	2e-04
147	GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)	44	3e-04
148	TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)	44	3e-04
149	MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing prote...	44	3e-04
150	MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phos...	44	3e-04
151	TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)	44	3e-04
152	RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2	44	3e-04
153	MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musa...	44	3e-04
154	MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musa...	44	3e-04
155	MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musa...	44	3e-04
156	RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2	44	5e-04
157	RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif p...	44	5e-04
158	RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-bindin...	43	6e-04
159	SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)	43	6e-04
160	YAG3_SCHPO (Q09868) Hypothetical RNA-binding protein C12G12.03 i...	43	8e-04
161	PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bi...	43	8e-04
162	TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10 (Tran...	43	8e-04
163	TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10 (Tr...	43	8e-04
164	TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10 (Tr...	43	8e-04
165	HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 ...	43	8e-04
166	HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 ...	43	8e-04
167	YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 i...	43	8e-04
168	MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing prote...	42	0.001
169	TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein	42	0.001
170	SXL_MUSDO (O17310) Sex-lethal homolog	42	0.001
171	SXL_CHRRU (O97018) Sex-lethal homolog	42	0.001
172	ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1	42	0.001
173	MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing prote...	42	0.001
174	HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (h...	42	0.001
175	MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musash...	42	0.001
176	MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musa...	42	0.001
177	MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phos...	42	0.002
178	NOP12_CANGA (Q6FUS6) Nucleolar protein 12	42	0.002
179	SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nucl...	42	0.002
180	MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phos...	42	0.002
181	DND1_MOUSE (Q6VY05) Dead end protein homolog 1 (RNA-binding moti...	42	0.002
182	SXL_DROSU (Q24668) Protein sex-lethal	42	0.002
183	SXL_DROME (P19339) Protein sex-lethal	42	0.002
184	RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-ri...	42	0.002
185	FCA_ARATH (O04425) Flowering time control protein FCA	42	0.002
186	ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (...	41	0.002
187	HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (...	41	0.002
188	MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing prote...	41	0.002
189	YRA1_YEAST (Q12159) RNA annealing protein YRA1	41	0.002
190	RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F...	41	0.003
191	NUCL_HUMAN (P19338) Nucleolin (Protein C23)	41	0.003
192	SGN1_YEAST (P40561) RNA-binding protein SGN1	41	0.003
193	NUCL_PONPY (Q5RF26) Nucleolin	41	0.003
194	PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5....	41	0.003
195	PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5....	41	0.003
196	MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phos...	41	0.003
197	NUCL_MACFA (Q4R4J7) Nucleolin	41	0.003
198	HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (...	41	0.003
199	MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing prote...	40	0.004
200	IF34_SCHPO (P78795) Probable eukaryotic translation initiation f...	40	0.004
201	TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)	40	0.004
202	ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B ...	40	0.004
203	RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interact...	40	0.004
204	BOULE_DROME (Q24207) Protein boule	40	0.004
205	RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interact...	40	0.005
206	RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-bindin...	40	0.005
207	PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein	40	0.005
208	RB97D_DROME (Q02926) Ribonucleoprotein RB97D	40	0.005
209	THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1...	40	0.007
210	THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and expor...	40	0.007
211	CPSF7_RAT (Q5XI29) Cleavage and polyadenylation specificity fact...	40	0.007
212	NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NO...	40	0.007
213	ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B ...	40	0.007
214	CPSF7_MOUSE (Q8BTV2) Cleavage and polyadenylation specificity fa...	40	0.007
215	DND1_HUMAN (Q8IYX4) Dead end protein homolog 1 (RNA-binding moti...	39	0.009
216	RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interact...	39	0.009
217	NUCL_MOUSE (P09405) Nucleolin (Protein C23)	39	0.009
218	RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif pro...	39	0.009
219	RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif p...	39	0.009
220	RNP24_SCHPO (Q09100) RNA-binding protein rnp24	39	0.009
221	TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding p...	39	0.009
222	RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif pro...	39	0.009
223	HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hn...	39	0.009
224	CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity fa...	39	0.009
225	RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interact...	39	0.009
226	RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif pro...	39	0.009
227	NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding pr...	39	0.009
228	NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding pr...	39	0.009
229	CPSF7_HUMAN (Q8N684) Cleavage and polyadenylation specificity fa...	39	0.009
230	CPSF6_XENLA (Q6DDW4) Cleavage and polyadenylation specificity fa...	39	0.009
231	CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity fa...	39	0.009
232	CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity fa...	39	0.009
233	CPSF6_CHICK (Q5ZL34) Cleavage and polyadenylation specificity fa...	39	0.009
234	NUCL_MESAU (P08199) Nucleolin (Protein C23)	39	0.009
235	NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding pr...	39	0.009
236	RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif pro...	39	0.009
237	RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif p...	39	0.009
238	DND1_BRARE (Q7T1H5) Dead end protein 1	39	0.009
239	NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding prot...	39	0.009
240	RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif pro...	39	0.009
241	NUCL_RAT (P13383) Nucleolin (Protein C23)	39	0.009
242	NUCL_CHICK (P15771) Nucleolin (Protein C23)	39	0.011
243	TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)	39	0.011
244	NOP12_YEAST (Q08208) Nucleolar protein 12	39	0.011
245	HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hn...	39	0.011
246	TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)	39	0.011
247	MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing prote...	39	0.015
248	RAVR2_HUMAN (Q9HCJ3) Protein raver-2	39	0.015
249	RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin...	39	0.015
250	MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing prote...	39	0.015
251	U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 aux...	39	0.015
252	RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1	39	0.015
253	G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protei...	38	0.019
254	G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protei...	38	0.019
255	RAVR1_HUMAN (Q8IY67) Protein raver-1	38	0.019
256	PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein	38	0.019
257	MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing prote...	38	0.019
258	NOP12_SCHPO (O13741) Nucleolar protein 12	38	0.019
259	IF34_CAEEL (Q19706) Probable eukaryotic translation initiation f...	38	0.025
260	NAM8_YEAST (Q00539) Protein NAM8	38	0.025
261	MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing prote...	38	0.025
262	CPSF6_PONPY (Q5NVH8) Cleavage and polyadenylation specificity fa...	38	0.025
263	RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U...	38	0.025
264	IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SN...	38	0.025
265	PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5....	38	0.025
266	RNP1_CAEEL (Q10667) RNA-binding protein rnp-1	37	0.033
267	RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa ho...	37	0.033
268	NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2	37	0.033
269	U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 aux...	37	0.033
270	U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 aux...	37	0.033
271	NOP12_KLULA (Q6CKV6) Nucleolar protein 12	37	0.033
272	G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protei...	37	0.033
273	YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 i...	37	0.033
274	LARK_DROME (Q94901) RNA-binding protein lark	37	0.033
275	G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protei...	37	0.033
276	DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1	37	0.033
277	MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phos...	37	0.033
278	IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 s...	37	0.033
279	IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 s...	37	0.033
280	SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich...	37	0.043
281	RSD1_SCHPO (O13845) RNA-binding protein rsd1	37	0.043
282	YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 i...	37	0.043
283	RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, fa...	37	0.043
284	SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich...	37	0.043
285	DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding prote...	37	0.043
286	DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding prote...	37	0.043
287	SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)	37	0.043
288	RAVR2_MOUSE (Q7TPD6) Protein raver-2	37	0.056
289	DND1_XENLA (Q6DCB7) Dead end protein homolog 1	37	0.056
290	SXL_MEGSC (O01671) Sex-lethal homolog	37	0.056
291	HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2...	37	0.056
292	SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1	36	0.073
293	SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-lik...	36	0.073
294	NOP12_ASHGO (Q75BJ7) Nucleolar protein 12	36	0.073
295	IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 R...	36	0.073
296	SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1	36	0.073
297	SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1	36	0.073
298	SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1	36	0.073
299	SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pr...	36	0.073
300	REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2	36	0.073
301	PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-bin...	36	0.073
302	SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Sp...	36	0.095
303	SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Spli...	36	0.095
304	SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Sp...	36	0.095
305	SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Sp...	36	0.095
306	SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Sp...	36	0.095
307	RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U...	36	0.095
308	EWS_MOUSE (Q61545) RNA-binding protein EWS	36	0.095
309	RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-ri...	36	0.095
310	MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing prote...	36	0.095
311	RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U...	36	0.095
312	SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1	35	0.12
313	SCE3_SCHPO (O14369) Probable RNA-binding protein sce3	35	0.12
314	DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)	35	0.12
315	DAZ1_CAEEL (Q20870) DAZ protein 1	35	0.12
316	PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-bi...	35	0.16
317	PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-bi...	35	0.16
318	PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-bi...	35	0.16
319	RAVR1_RAT (Q5XI28) Protein raver-1	35	0.16
320	RAVR1_MOUSE (Q9CW46) Protein raver-1	35	0.16
321	EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing...	35	0.16
322	HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)	35	0.16
323	TRA2_DROME (P19018) Transformer-2 sex-determining protein	35	0.21
324	SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9	35	0.21
325	SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pr...	35	0.21
326	PRT1_PICAN (P12806) Putative PRT1 protein	35	0.21
327	MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing prote...	35	0.21
328	NOP12_YARLI (Q6C2Q7) Nucleolar protein 12	35	0.21
329	SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9	35	0.21
330	PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-bin...	34	0.28
331	RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41	34	0.28
332	DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autoso...	34	0.28
333	DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autoso...	34	0.28
334	DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autoso...	34	0.28
335	U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 aux...	34	0.28
336	RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif p...	34	0.28
337	RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif p...	34	0.28
338	RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif p...	34	0.28
339	RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif p...	34	0.28
340	YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 ...	34	0.36
341	DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3	34	0.36
342	DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4	34	0.36
343	MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog) (SMA...	34	0.36
344	MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog) (SMA...	34	0.36
345	MLO3_SCHPO (Q09330) Protein mlo3	34	0.36
346	DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2	34	0.36
347	TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)	34	0.36
348	SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein...	34	0.36
349	DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1	34	0.36
350	RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40	33	0.47
351	RBM10_RAT (P70501) RNA-binding protein 10 (RNA-binding motif pro...	33	0.47
352	RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-bindi...	33	0.47
353	RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-bindi...	33	0.47
354	NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2	33	0.47
355	DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autoso...	33	0.47
356	TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)	33	0.62
357	NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 k...	33	0.81
358	RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U...	33	0.81
359	RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif pro...	32	1.1
360	RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif pro...	32	1.1
361	NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 k...	32	1.1
362	NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 k...	32	1.1
363	NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2	32	1.1
364	TRA2_DROVI (O02008) Transformer-2 sex-determining protein	32	1.1
365	RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U...	32	1.1
366	YQO1_CAEEL (Q09293) Putative RNA-binding protein EEED8.1	32	1.4
367	ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)	32	1.4
368	ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)	32	1.4
369	RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protei...	32	1.4
370	NONA_DROLR (Q9GRX4) Protein no-on-transient A	32	1.4
371	SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pr...	32	1.4
372	RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif pro...	32	1.4
373	SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4	32	1.4
374	KSGA_METCA (Q60B77) Dimethyladenosine transferase (EC 2.1.1.-) (...	32	1.4
375	CAZ_DROME (Q27294) RNA-binding protein cabeza (Sarcoma-associate...	32	1.8
376	RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif p...	32	1.8
377	NONA_DROVI (Q9GRW7) Protein no-on-transient A	32	1.8
378	CMTG_PSEPU (Q51983) 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.-...	31	2.3
379	WHI3_YEAST (P34761) Protein WHI3	31	2.3
380	SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pr...	31	3.1
381	ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)	31	3.1
382	NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific pro...	31	3.1
383	RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-ri...	31	3.1
384	PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 ...	30	4.0
385	PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 ...	30	4.0
386	RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31	30	5.2
387	RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-bindin...	30	5.2
388	KSGA_PSEPK (Q88QT6) Dimethyladenosine transferase (EC 2.1.1.-) (...	30	5.2
389	RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif p...	30	6.8
390	RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif p...	30	6.8
391	ERME_SACER (P07287) rRNA adenine N-6-methyltransferase (EC 2.1.1...	30	6.8
392	IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B ...	30	6.8
393	NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting...	30	6.8
394	RBM12_MOUSE (Q8R4X3) RNA-binding protein 12 (RNA-binding motif p...	30	6.8
395	CASC3_HUMAN (O15234) Protein CASC3 (Cancer susceptibility candid...	29	8.9
396	GRP33_ARTSA (P13230) Glycine-rich protein GRP33	29	8.9
397	KSGA_XYLFA (Q9PBJ6) Dimethyladenosine transferase (EC 2.1.1.-) (...	29	8.9
398	CPB1_CAEEL (Q03571) Cytoplasmic polyadenylation element-binding ...	29	8.9
399	RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-ri...	29	8.9

---

>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score =  132 bits (331), Expect = 1e-30
 Identities = 60/77 (77%), Positives = 74/77 (96%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           EPPE+AK++VGNLPYDVDSE LA+LF+QAGVVE+AEVIYNR++ QSRGFGFVTMST+EEA
Sbjct: 131 EPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEA 190

Query: 536 DKAIETFNRYDISGRLL 586
           +KA+E +NRYD++GRLL
Sbjct: 191 EKAVEMYNRYDVNGRLL 207



 Score = 72.8 bits (177), Expect = 7e-13
 Identities = 33/71 (46%), Positives = 48/71 (67%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           ++YVGN+P+ +D  RL QLF + G V  A V+Y+RE+G+SRGFGFVTM++  E   AI  
Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290

Query: 554 FNRYDISGRLL 586
            +   + GR +
Sbjct: 291 LDGQSLDGRTI 301

---

>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score =  129 bits (323), Expect = 8e-30
 Identities = 62/87 (71%), Positives = 77/87 (88%), Gaps = 3/87 (3%)
 Frame = +2

Query: 335 GDAGYTAE---PPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFG 505
           G+AG T E   P E+AK++VGNLPYD+DSE LAQLF QAGVVE+AEVIYNRE+ +SRGFG
Sbjct: 82  GEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFG 141

Query: 506 FVTMSTIEEADKAIETFNRYDISGRLL 586
           FVTMST+EEADKA+E +++YD++GRLL
Sbjct: 142 FVTMSTVEEADKAVELYSQYDLNGRLL 168



 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 34/71 (47%), Positives = 50/71 (70%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           ++YVGN+P+D+D  RL Q+F + G V  A V+++RESG+SRGFGFVTMS+  E  +AI  
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251

Query: 554 FNRYDISGRLL 586
            +   + GR +
Sbjct: 252 LDGQTLDGRTI 262

---

>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)|
          Length = 233

 Score =  125 bits (313), Expect = 1e-28
 Identities = 60/84 (71%), Positives = 73/84 (86%)
 Frame = +2

Query: 335 GDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVT 514
           G  G++ EPPEEAK++VGNLPYDVDSE+LA +FD AGVVE+AEVIYNRE+ +SRGFGFVT
Sbjct: 44  GGQGFS-EPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVT 102

Query: 515 MSTIEEADKAIETFNRYDISGRLL 586
           MST+EEA+KA+E  N YD+ GR L
Sbjct: 103 MSTVEEAEKAVELLNGYDMDGRQL 126



 Score = 75.9 bits (185), Expect = 8e-14
 Identities = 37/69 (53%), Positives = 49/69 (71%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           +VYVGNLP+DVD+ RL QLF + G V  A V+ +RE+G+SRGFGFVTMS+  E + AI  
Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 209

Query: 554 FNRYDISGR 580
            +   + GR
Sbjct: 210 LDGQTLDGR 218

---

>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score =  119 bits (298), Expect = 7e-27
 Identities = 55/77 (71%), Positives = 69/77 (89%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           EP EEAK++VGNL YDV+S+ LA LF+QAG VE+AEVIYNRE+ QSRGFGFVTMS+++EA
Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204

Query: 536 DKAIETFNRYDISGRLL 586
           + A+E FNRYD++GRLL
Sbjct: 205 ETAVEKFNRYDLNGRLL 221



 Score = 82.8 bits (203), Expect = 7e-16
 Identities = 38/71 (53%), Positives = 54/71 (76%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           +VYVGNLP+DVD+ RL QLF + G V  A V+Y+RE+G+SRGFGFVTMS ++E ++AI  
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304

Query: 554 FNRYDISGRLL 586
            +  ++ GR +
Sbjct: 305 LDGQNLEGRAI 315

---

>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)|
          Length = 292

 Score = 92.4 bits (228), Expect = 9e-19
 Identities = 47/81 (58%), Positives = 61/81 (75%), Gaps = 3/81 (3%)
 Frame = +2

Query: 353 AEPP---EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMST 523
           AE P   E+ K++VGNLP+ VDS  LA LF++AG VE+ EVIY++ SG+SRGFGFVTMST
Sbjct: 79  AEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMST 138

Query: 524 IEEADKAIETFNRYDISGRLL 586
            EE + A + FN Y+I GR +
Sbjct: 139 KEEVEAAEQQFNGYEIDGRAI 159



 Score = 73.6 bits (179), Expect = 4e-13
 Identities = 35/69 (50%), Positives = 50/69 (72%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           +VYVGNL + VD   L +LF + G V  A+V+Y+R+SG+SRGFGFVT S+ +E + AI++
Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268

Query: 554 FNRYDISGR 580
            N  D+ GR
Sbjct: 269 LNGIDLDGR 277

---

>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 90.9 bits (224), Expect = 2e-18
 Identities = 44/82 (53%), Positives = 62/82 (75%), Gaps = 6/82 (7%)
 Frame = +2

Query: 359 PPEEA------KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMS 520
           PP+E       K++VGNLP++VDS +LAQLF+ AG VE+ EVIY++ +G+SRGFGFVTMS
Sbjct: 81  PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMS 140

Query: 521 TIEEADKAIETFNRYDISGRLL 586
           ++ E + A + FN Y++ GR L
Sbjct: 141 SVSEVEAAAQQFNGYELDGRPL 162



 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 33/69 (47%), Positives = 46/69 (66%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           +VYVGNL + VD   L  LF + G V  A VIY+R+SG+S+GFGFVT  + +E   AI++
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264

Query: 554 FNRYDISGR 580
            +  D+ GR
Sbjct: 265 LDGADLDGR 273

---

>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 46/81 (56%), Positives = 61/81 (75%), Gaps = 3/81 (3%)
 Frame = +2

Query: 353 AEPP---EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMST 523
           AE P   E+ K++VGNLP+ VDS  LA LF++AG VE+ EVIY++ +G+SRGFGFVTMST
Sbjct: 78  AEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMST 137

Query: 524 IEEADKAIETFNRYDISGRLL 586
            EE + A + FN Y+I GR +
Sbjct: 138 KEEVEAAEQQFNGYEIDGRAI 158



 Score = 73.2 bits (178), Expect = 5e-13
 Identities = 35/69 (50%), Positives = 50/69 (72%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           +VYVGNL + VD   L +LF + G V  A+V+Y+R+SG+SRGFGFVT S+ +E + AI++
Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267

Query: 554 FNRYDISGR 580
            N  D+ GR
Sbjct: 268 LNGVDLDGR 276

---

>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 44/86 (51%), Positives = 61/86 (70%), Gaps = 2/86 (2%)
 Frame = +2

Query: 335 GDAGYTAEP--PEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGF 508
           GD G   E     + K++VGNLP+  DS  LA+LF++AG VE+ EVIY++ +G+SRGFGF
Sbjct: 73  GDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGF 132

Query: 509 VTMSTIEEADKAIETFNRYDISGRLL 586
           VTMS+ EE + A + FN Y++ GR L
Sbjct: 133 VTMSSKEEVEAACQQFNGYELDGRAL 158



 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 36/71 (50%), Positives = 52/71 (73%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           +VYVGNL + VD + L  LF + G V  A+V+Y+R+SG+SRGFGFVT S+ EE + AIE+
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248

Query: 554 FNRYDISGRLL 586
            +  D++GR +
Sbjct: 249 LDGVDLNGRAI 259

---

>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 86.7 bits (213), Expect = 5e-17
 Identities = 41/73 (56%), Positives = 56/73 (76%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           + K++VGNL ++VDS +LAQLF+ AG VE+ EVIY++ +G+SRGFGFVTMST  E + A 
Sbjct: 98  DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAA 157

Query: 548 ETFNRYDISGRLL 586
           + FN Y+  GR L
Sbjct: 158 QQFNGYEFEGRPL 170



 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 35/69 (50%), Positives = 49/69 (71%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           ++YVGNL + VD   L  LF++ G V  A VIY+R+SG+S+GFGFVT+S+ +E  KAI +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317

Query: 554 FNRYDISGR 580
            N  D+ GR
Sbjct: 318 LNGADLDGR 326

---

>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 43/86 (50%), Positives = 60/86 (69%), Gaps = 2/86 (2%)
 Frame = +2

Query: 335 GDAGYTAEP--PEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGF 508
           GD G   E     + K++VGNL +  DS  LA+LF++AG VE+ EVIY++ +G+SRGFGF
Sbjct: 73  GDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGF 132

Query: 509 VTMSTIEEADKAIETFNRYDISGRLL 586
           VTMS+ EE + A + FN Y++ GR L
Sbjct: 133 VTMSSKEEVEAACQQFNGYELDGRAL 158



 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 36/71 (50%), Positives = 52/71 (73%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           +VYVGNL + VD + L  LF + G V  A+V+Y+R+SG+SRGFGFVT S+ EE + AIE+
Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254

Query: 554 FNRYDISGRLL 586
            +  D++GR +
Sbjct: 255 LDGVDLNGRAI 265

---

>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor|
          Length = 324

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 33/76 (43%), Positives = 53/76 (69%)
 Frame = +2

Query: 353 AEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEE 532
           +E  E  ++YVGNLP+ + S +L+++F +AG V   E++Y+R + +SRGF FVTM ++EE
Sbjct: 108 SESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEE 167

Query: 533 ADKAIETFNRYDISGR 580
           A +AI  F+   + GR
Sbjct: 168 AKEAIRLFDGSQVGGR 183



 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLF-DQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           K+YV NL + + S+ L   F DQ G +  A+VIY+R SG+SRGFGF+T S+ E  + A++
Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMS-AKVIYDRSSGRSRGFGFITFSSAEAMNSALD 276

Query: 551 TFNRYDISGRLL 586
           T N  ++ GR L
Sbjct: 277 TMNEVELEGRPL 288

---

>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 33/84 (39%), Positives = 57/84 (67%)
 Frame = +2

Query: 329 SGGDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGF 508
           S   A  +++     ++YVGN+P +++++ L  + ++ G +E+AEV+Y++ SG+SR FGF
Sbjct: 70  SSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGF 129

Query: 509 VTMSTIEEADKAIETFNRYDISGR 580
           VTM T+E+A+  IE  N  +I GR
Sbjct: 130 VTMKTVEDANAVIEKLNDTEIGGR 153



 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 27/69 (39%), Positives = 39/69 (56%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           KVY+GNL   V +E L   F + G V  A+V     + +S GFGFV+ S+ EE + AI+ 
Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244

Query: 554 FNRYDISGR 580
            N   + G+
Sbjct: 245 LNNSVLEGQ 253

---

>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 27/72 (37%), Positives = 44/72 (61%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           +E K++VG L +D + + L Q+F + G +    V+ +RE+ +SRGFGFVT   I++A  A
Sbjct: 4   DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query: 545 IETFNRYDISGR 580
           +   N   + GR
Sbjct: 64  MMAMNGKSVDGR 75

---

>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP)
          Length = 172

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 27/72 (37%), Positives = 44/72 (61%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           +E K++VG L +D + + L Q+F + G +    V+ +RE+ +SRGFGFVT   I++A  A
Sbjct: 4   DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query: 545 IETFNRYDISGR 580
           +   N   + GR
Sbjct: 64  MMAMNGKSVDGR 75

---

>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 27/72 (37%), Positives = 44/72 (61%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           +E K++VG L +D + + L Q+F + G +    V+ +RE+ +SRGFGFVT   I++A  A
Sbjct: 4   DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query: 545 IETFNRYDISGR 580
           +   N   + GR
Sbjct: 64  MMAMNGKSVDGR 75

---

>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 27/72 (37%), Positives = 44/72 (61%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           +E K++VG L +D + + L Q+F + G +    V+ +RE+ +SRGFGFVT   I++A  A
Sbjct: 4   DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query: 545 IETFNRYDISGR 580
           +   N   + GR
Sbjct: 64  MMAMNGKSVDGR 75

---

>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 27/72 (37%), Positives = 44/72 (61%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           +E K++VG L +D + + L Q+F + G +    V+ +RE+ +SRGFGFVT   I++A  A
Sbjct: 4   DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query: 545 IETFNRYDISGR 580
           +   N   + GR
Sbjct: 64  MMAMNGKSVDGR 75

---

>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A|
          Length = 166

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +2

Query: 353 AEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEE 532
           A P  E + +VG L +  D   L   F Q G V  +++I +RE+G+SRGFGFVT    + 
Sbjct: 2   ASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKS 61

Query: 533 ADKAIETFNRYDISGR 580
              AIE  N  D+ GR
Sbjct: 62  MKDAIEGMNGQDLDGR 77

---

>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of|
           activating protein 1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER)
          Length = 530

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 24/69 (34%), Positives = 48/69 (69%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           ++YVG+L +++  + L  +F+  G +E  +++ + E+G+S+G+GF+T S  E A KA+E 
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310

Query: 554 FNRYDISGR 580
            N ++++GR
Sbjct: 311 LNGFELAGR 319

---

>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular|
           carcinoma protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 24/69 (34%), Positives = 48/69 (69%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           ++YVG+L +++  + L  +F+  G +E  +++ + E+G+S+G+GF+T S  E A KA+E 
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310

Query: 554 FNRYDISGR 580
            N ++++GR
Sbjct: 311 LNGFELAGR 319

---

>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
 Frame = +2

Query: 341 AGYTAEPPEEAK----VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGF 508
           AG T   P   +    V+VGN+PY+   E+L  +F + G V    ++Y+RE+G+ +G+GF
Sbjct: 2   AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGF 61

Query: 509 VTMSTIEEADKAIETFNRYDISGRLL 586
                 E A  A+   N  + SGR L
Sbjct: 62  CEYQDQETALSAMRNLNGREFSGRAL 87

---

>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
 Frame = +2

Query: 341 AGYTAEPPEEAK----VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGF 508
           AG T   P   +    V+VGN+PY+   E+L  +F + G V    ++Y+RE+G+ +G+GF
Sbjct: 2   AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGF 61

Query: 509 VTMSTIEEADKAIETFNRYDISGRLL 586
                 E A  A+   N  + SGR L
Sbjct: 62  CEYQDQETALSAMRNLNGREFSGRAL 87

---

>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
 Frame = +2

Query: 341 AGYTAEPPEEAK----VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGF 508
           AG T   P   +    V+VGN+PY+   E+L  +F + G V    ++Y+RE+G+ +G+GF
Sbjct: 2   AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGF 61

Query: 509 VTMSTIEEADKAIETFNRYDISGRLL 586
                 E A  A+   N  + SGR L
Sbjct: 62  CEYQDQETALSAMRNLNGREFSGRAL 87

---

>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A|
          Length = 169

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 30/76 (39%), Positives = 42/76 (55%)
 Frame = +2

Query: 353 AEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEE 532
           A P  E + +VG L +  D   L   F Q G +  +++I +RE+G+SRGFGFVT    + 
Sbjct: 2   ASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKS 61

Query: 533 ADKAIETFNRYDISGR 580
              AIE  N  D+ GR
Sbjct: 62  MKDAIEGMNGQDLDGR 77

---

>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 28/75 (37%), Positives = 45/75 (60%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           E   V+VG L ++VD + L Q F++ G +  A VI + +SG+S+G+G+V   T E A  A
Sbjct: 261 ETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAA 320

Query: 545 IETFNRYDISGRLLN 589
           +      +I GR++N
Sbjct: 321 VAANGTKEIDGRMVN 335



 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 27/82 (32%), Positives = 46/82 (56%)
 Frame = +2

Query: 335 GDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVT 514
           G+ G     P +  V+VGNL ++   + L+  F   G ++   +  + +SG+ +GFG+VT
Sbjct: 355 GNFGDQLSEPSDT-VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVT 413

Query: 515 MSTIEEADKAIETFNRYDISGR 580
            S I+ A K +E  N + I+GR
Sbjct: 414 FSDIDSAKKCVE-MNGHFIAGR 434

---

>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 26/70 (37%), Positives = 41/70 (58%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V+VGN+PY+   E+L  +F + G V    ++Y+RE+G+ +G+GF      E A  A+   
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query: 557 NRYDISGRLL 586
           N  + SGR L
Sbjct: 78  NGREFSGRAL 87

---

>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic|
           poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A)
          Length = 629

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 30/80 (37%), Positives = 47/80 (58%)
 Frame = +2

Query: 347 YTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTI 526
           Y A+  E   VY+ N   D+D +RL ++F   G     +V+ + +SG+SRGFGFV     
Sbjct: 183 YGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNH 241

Query: 527 EEADKAIETFNRYDISGRLL 586
           EEA KA+   N  +++GR++
Sbjct: 242 EEAQKAVSEMNGKEVNGRMI 261



 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 28/70 (40%), Positives = 40/70 (57%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YV NL   +D +RL + F   G +  A+V+   E G S+GFGFV  S+ EEA KA+   
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEM 353

Query: 557 NRYDISGRLL 586
           N   +S + L
Sbjct: 354 NGRIVSTKPL 363



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 25/71 (35%), Positives = 38/71 (53%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V++ NL   +D++ L   F   G +   +V+ +     SRG+GFV   T E A++AI+T 
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTM 158

Query: 557 NRYDISGRLLN 589
           N     G LLN
Sbjct: 159 N-----GMLLN 164

---

>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 30/78 (38%), Positives = 44/78 (56%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           E  E A ++VG L + +D E L + F+  G V  A VIY R + +SRG+G+V       A
Sbjct: 163 ETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYA 222

Query: 536 DKAIETFNRYDISGRLLN 589
           +KAI+     +I GR +N
Sbjct: 223 EKAIQEMQGKEIDGRPIN 240



 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 24/79 (30%), Positives = 43/79 (54%)
 Frame = +2

Query: 344 GYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMST 523
           G T   P +  +++GNL ++ D + + +LF + G V    +  + E+ Q +GFG+V  S 
Sbjct: 259 GDTPSEPSDT-LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSN 317

Query: 524 IEEADKAIETFNRYDISGR 580
           +E+A KA++      I  R
Sbjct: 318 MEDAKKALDALQGEYIDNR 336

---

>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 26/70 (37%), Positives = 41/70 (58%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V+VGN+PY+   E+L  +F + G V    ++Y+RE+G+ +G+GF      E A  A+   
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query: 557 NRYDISGRLL 586
           N  + SGR L
Sbjct: 78  NGREFSGRAL 87

---

>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 26/70 (37%), Positives = 41/70 (58%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V+VGN+PY+   E+L  +F + G V    ++Y+RE+G+ +G+GF      E A  A+   
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query: 557 NRYDISGRLL 586
           N  + SGR L
Sbjct: 78  NGREFSGRAL 87

---

>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein|
           4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 31/83 (37%), Positives = 50/83 (60%)
 Frame = +2

Query: 338 DAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTM 517
           +A   A+  E   VY+ N   +VD E L +LF Q G     +V+ +  +G+S+GFGFV+ 
Sbjct: 180 EAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSY 238

Query: 518 STIEEADKAIETFNRYDISGRLL 586
              E+A+KA+E  N  +ISG+++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKII 261



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 25/61 (40%), Positives = 37/61 (60%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +Y+ NL   +D E+L + F   G +  A+V+   E G+S+GFGFV  S+ EEA KA+   
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 353

Query: 557 N 559
           N
Sbjct: 354 N 354



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 27/71 (38%), Positives = 39/71 (54%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V++ NL   +D++ L   F   G +   +V+ + E+G S+G+ FV   T E ADKAIE  
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158

Query: 557 NRYDISGRLLN 589
           N     G LLN
Sbjct: 159 N-----GMLLN 164

---

>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15|
          Length = 296

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 26/86 (30%), Positives = 47/86 (54%)
 Frame = +2

Query: 329 SGGDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGF 508
           SG +AG    PP    VY+G++PYD   E++  L    G V   +++++ ++G+S+G+ F
Sbjct: 5   SGVNAGVQNNPPSRV-VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAF 63

Query: 509 VTMSTIEEADKAIETFNRYDISGRLL 586
           +    +E +  A+   N Y +  R L
Sbjct: 64  IEFRDLESSASAVRNLNGYQLGSRFL 89

---

>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)|
           binding protein) (ePABP)
          Length = 629

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 29/80 (36%), Positives = 47/80 (58%)
 Frame = +2

Query: 347 YTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTI 526
           Y A+  E   VY+ N   D+D +RL ++F   G     +V+ + ++G+SRGFGFV     
Sbjct: 183 YGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNH 241

Query: 527 EEADKAIETFNRYDISGRLL 586
           EEA KA+   N  +++GR++
Sbjct: 242 EEAQKAVSEMNGKEVNGRMI 261



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 28/70 (40%), Positives = 40/70 (57%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YV NL   +D +RL + F   G +  A+V+   E G S+GFGFV  S+ EEA KA+   
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEM 353

Query: 557 NRYDISGRLL 586
           N   +S + L
Sbjct: 354 NGRIVSTKPL 363



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 25/71 (35%), Positives = 38/71 (53%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V++ NL   +D++ L   F   G +   +V+ +     SRG+GFV   T E A++AI+T 
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTM 158

Query: 557 NRYDISGRLLN 589
           N     G LLN
Sbjct: 159 N-----GMLLN 164

---

>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2|
          Length = 168

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 30/71 (42%), Positives = 44/71 (61%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           E + +VG L +  ++E L Q F   G V  ++VI +RE+G+SRGFGFVT S+ +    AI
Sbjct: 7   EYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAI 66

Query: 548 ETFNRYDISGR 580
           E  N  ++ GR
Sbjct: 67  ENMNGKELDGR 77

---

>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding|
           protein SEB4)
          Length = 237

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 31/72 (43%), Positives = 44/72 (61%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K++VG LPY      L + F+  G +E A VI +R++G+SRG+GFVTM+    AD+A + 
Sbjct: 33  KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92

Query: 554 FNRYDISGRLLN 589
            N   I GR  N
Sbjct: 93  PNPI-IDGRKAN 103

---

>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)|
          Length = 591

 Score = 55.8 bits (133), Expect = 9e-08
 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
 Frame = +2

Query: 362 PEEAKVYVGNLPYDVDSERLAQLF-DQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEAD 538
           P   +V++ N+PYD+  + +  L  ++ G V   E+  + E G+SRG G V     E   
Sbjct: 88  PNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVK 146

Query: 539 KAIETFNRYDISGRLLN 589
           KA+ET N+YD+SGR LN
Sbjct: 147 KALETMNKYDLSGRPLN 163



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 27/69 (39%), Positives = 41/69 (59%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           +++V NLP+D+  ++L + F Q G V  AE+    E+G+S+G G V   + E A+KA   
Sbjct: 515 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFESAESAEKACRI 572

Query: 554 FNRYDISGR 580
            N   ISGR
Sbjct: 573 MNGIKISGR 581

---

>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)|
          Length = 600

 Score = 55.8 bits (133), Expect = 9e-08
 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
 Frame = +2

Query: 362 PEEAKVYVGNLPYDVDSERLAQLF-DQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEAD 538
           P   +V++ N+PYD+  + +  L  ++ G V   E+  + E G+SRG G V     E   
Sbjct: 97  PNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVK 155

Query: 539 KAIETFNRYDISGRLLN 589
           KA+ET N+YD+SGR LN
Sbjct: 156 KALETMNKYDLSGRPLN 172



 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 27/69 (39%), Positives = 41/69 (59%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           +++V NLP+D+  ++L + F Q G V  AE+    E+G+S+G G V   + E A+KA   
Sbjct: 524 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFDSPESAEKACRI 581

Query: 554 FNRYDISGR 580
            N   ISGR
Sbjct: 582 MNGIKISGR 590

---

>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic|
           poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B)
          Length = 629

 Score = 55.8 bits (133), Expect = 9e-08
 Identities = 30/80 (37%), Positives = 46/80 (57%)
 Frame = +2

Query: 347 YTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTI 526
           Y A+  E   VY+ N   D+D +RL ++F   G     +V+ +  SG+SRGFGFV     
Sbjct: 183 YGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNH 241

Query: 527 EEADKAIETFNRYDISGRLL 586
           EEA KA+   N  +++GR++
Sbjct: 242 EEAQKAVTEMNGKEVNGRMV 261



 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 27/70 (38%), Positives = 39/70 (55%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YV NL   +D +RL + F   G +   +V+   E G S+GFGFV  S+ EEA KA+   
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPEEATKAVTEM 353

Query: 557 NRYDISGRLL 586
           N   +S + L
Sbjct: 354 NGRIVSTKPL 363



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 25/71 (35%), Positives = 38/71 (53%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V++ NL   +D++ L   F   G +   +V+ +     SRG+GFV   T E A++AI+T 
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158

Query: 557 NRYDISGRLLN 589
           N     G LLN
Sbjct: 159 N-----GMLLN 164

---

>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 55.8 bits (133), Expect = 9e-08
 Identities = 30/81 (37%), Positives = 48/81 (59%)
 Frame = +2

Query: 338 DAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTM 517
           +A   A   E   VY+ N   D+D ERL +LF + G     +V+ + ESG+S+GFGFV+ 
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSF 238

Query: 518 STIEEADKAIETFNRYDISGR 580
              E+A KA++  N  +++G+
Sbjct: 239 ERHEDAQKAVDEMNGKELNGK 259



 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 27/61 (44%), Positives = 37/61 (60%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YV NL   +D ERL + F   G +  A+V+   E G+S+GFGFV  S+ EEA KA+   
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353

Query: 557 N 559
           N
Sbjct: 354 N 354



 Score = 38.5 bits (88), Expect = 0.015
 Identities = 25/71 (35%), Positives = 40/71 (56%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +++ NL   +D++ L   F   G +   +V+ + E+G S+G+GFV   T E A++AIE  
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158

Query: 557 NRYDISGRLLN 589
           N     G LLN
Sbjct: 159 N-----GMLLN 164

---

>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 55.8 bits (133), Expect = 9e-08
 Identities = 30/81 (37%), Positives = 48/81 (59%)
 Frame = +2

Query: 338 DAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTM 517
           +A   A   E   VY+ N   D+D ERL +LF + G     +V+ + ESG+S+GFGFV+ 
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSF 238

Query: 518 STIEEADKAIETFNRYDISGR 580
              E+A KA++  N  +++G+
Sbjct: 239 ERHEDAQKAVDEMNGKELNGK 259



 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 27/61 (44%), Positives = 37/61 (60%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YV NL   +D ERL + F   G +  A+V+   E G+S+GFGFV  S+ EEA KA+   
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353

Query: 557 N 559
           N
Sbjct: 354 N 354



 Score = 38.5 bits (88), Expect = 0.015
 Identities = 25/71 (35%), Positives = 40/71 (56%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +++ NL   +D++ L   F   G +   +V+ + E+G S+G+GFV   T E A++AIE  
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158

Query: 557 NRYDISGRLLN 589
           N     G LLN
Sbjct: 159 N-----GMLLN 164

---

>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein|
          Length = 157

 Score = 55.8 bits (133), Expect = 9e-08
 Identities = 28/71 (39%), Positives = 42/71 (59%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           E + +VG L +  + E L Q F Q G +  +++I +RE+G+SRGFGFVT    +    AI
Sbjct: 5   EYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAI 64

Query: 548 ETFNRYDISGR 580
           E  N  ++ GR
Sbjct: 65  EGMNGQELDGR 75

---

>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein|
           1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B)
           (PABP 1-B) (xPABP1-B)
          Length = 633

 Score = 55.8 bits (133), Expect = 9e-08
 Identities = 30/83 (36%), Positives = 47/83 (56%)
 Frame = +2

Query: 338 DAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTM 517
           +A   A   E   VY+ N   D+D ERL + F Q G     +V+ + + G+SRGFGFV+ 
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSF 238

Query: 518 STIEEADKAIETFNRYDISGRLL 586
              E+A KA++  N  D++G+ +
Sbjct: 239 ERHEDAQKAVDDMNGKDLNGKAI 261



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 27/61 (44%), Positives = 37/61 (60%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YV NL   +D ERL + F   G +  A+V+   E G+S+GFGFV  S+ EEA KA+   
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353

Query: 557 N 559
           N
Sbjct: 354 N 354



 Score = 37.4 bits (85), Expect = 0.033
 Identities = 24/71 (33%), Positives = 40/71 (56%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +++ NL   +D++ L   F   G +   +V+ + E+G S+G+GFV   T E A++AI+  
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDKM 158

Query: 557 NRYDISGRLLN 589
           N     G LLN
Sbjct: 159 N-----GMLLN 164

---

>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3)
          Length = 153

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 26/72 (36%), Positives = 40/72 (55%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           EE K++VG L ++ D + L   F   G +    V+ +RE+ +SRGFGF+T +  E A  A
Sbjct: 4   EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63

Query: 545 IETFNRYDISGR 580
           +   N   + GR
Sbjct: 64  MRAMNGESLDGR 75

---

>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)|
          Length = 169

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 29/73 (39%), Positives = 44/73 (60%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           E + +VG L +  + E L + F Q G V  +++I +RESG+SRGFGFVT    +    AI
Sbjct: 5   EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64

Query: 548 ETFNRYDISGRLL 586
           E  N  ++ GR++
Sbjct: 65  EEMNGKELDGRVI 77

---

>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (xCIRP)
          Length = 163

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 24/72 (33%), Positives = 43/72 (59%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           +E K+++G L ++ + + L Q F + G +    V+ +RE+ +SRGFGFVT   +++A  A
Sbjct: 3   DEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDA 62

Query: 545 IETFNRYDISGR 580
           +   N   + GR
Sbjct: 63  MMAMNGKSVDGR 74

---

>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 30/81 (37%), Positives = 47/81 (58%)
 Frame = +2

Query: 338 DAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTM 517
           +A   A   E   VY+ N   D+D ERL  LF + G     +V+ + ESG+S+GFGFV+ 
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSF 238

Query: 518 STIEEADKAIETFNRYDISGR 580
              E+A KA++  N  +++G+
Sbjct: 239 ERHEDAQKAVDEMNGKELNGK 259



 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 27/61 (44%), Positives = 37/61 (60%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YV NL   +D ERL + F   G +  A+V+   E G+S+GFGFV  S+ EEA KA+   
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353

Query: 557 N 559
           N
Sbjct: 354 N 354



 Score = 38.5 bits (88), Expect = 0.015
 Identities = 25/71 (35%), Positives = 40/71 (56%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +++ NL   +D++ L   F   G +   +V+ + E+G S+G+GFV   T E A++AIE  
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158

Query: 557 NRYDISGRLLN 589
           N     G LLN
Sbjct: 159 N-----GMLLN 164

---

>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 30/81 (37%), Positives = 47/81 (58%)
 Frame = +2

Query: 338 DAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTM 517
           +A   A   E   VY+ N   D+D ERL  LF + G     +V+ + ESG+S+GFGFV+ 
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSF 238

Query: 518 STIEEADKAIETFNRYDISGR 580
              E+A KA++  N  +++G+
Sbjct: 239 ERHEDAQKAVDEMNGKELNGK 259



 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 27/61 (44%), Positives = 37/61 (60%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YV NL   +D ERL + F   G +  A+V+   E G+S+GFGFV  S+ EEA KA+   
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353

Query: 557 N 559
           N
Sbjct: 354 N 354



 Score = 38.5 bits (88), Expect = 0.015
 Identities = 25/71 (35%), Positives = 40/71 (56%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +++ NL   +D++ L   F   G +   +V+ + E+G S+G+GFV   T E A++AIE  
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158

Query: 557 NRYDISGRLLN 589
           N     G LLN
Sbjct: 159 N-----GMLLN 164

---

>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3) (RNPL)
          Length = 157

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 26/72 (36%), Positives = 40/72 (55%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           EE K++VG L ++ D + L   F   G +    V+ +RE+ +SRGFGF+T +  E A  A
Sbjct: 4   EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63

Query: 545 IETFNRYDISGR 580
           +   N   + GR
Sbjct: 64  MRAMNGESLDGR 75

---

>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA|
           binding protein SEB4) (CLL-associated antigen KW-5)
          Length = 216

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 30/72 (41%), Positives = 44/72 (61%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K++VG LPY      L + F+  G +E A VI +R++G+SRG+GFVTM+    A++A + 
Sbjct: 12  KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query: 554 FNRYDISGRLLN 589
            N   I GR  N
Sbjct: 72  PNPI-IDGRKAN 82

---

>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3) (Testis-specific poly(A)-binding protein)
          Length = 631

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 30/81 (37%), Positives = 47/81 (58%)
 Frame = +2

Query: 338 DAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTM 517
           +A   A   E   VY+ N   D+D ERL  LF + G     +V+ + ESG+S+GFGFV+ 
Sbjct: 180 EAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSF 238

Query: 518 STIEEADKAIETFNRYDISGR 580
              E+A KA++  N  +++G+
Sbjct: 239 ERHEDAQKAVDEMNGKELNGK 259



 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 27/61 (44%), Positives = 37/61 (60%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YV NL   +D ERL + F   G +  A+V+   E G+S+GFGFV  S+ EEA KA+   
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353

Query: 557 N 559
           N
Sbjct: 354 N 354



 Score = 33.9 bits (76), Expect = 0.36
 Identities = 21/68 (30%), Positives = 38/68 (55%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V NL   ++++ L       G +    V+ + E+G S+G+GFV   T E A++AI+  
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKKM 158

Query: 557 NRYDISGR 580
           N   ++GR
Sbjct: 159 NGMLLNGR 166

---

>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7|
          Length = 176

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 29/71 (40%), Positives = 40/71 (56%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           E + +VG L +  D   L   F Q G V  +++I +RE+G+SRGFGFVT    +    AI
Sbjct: 7   EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66

Query: 548 ETFNRYDISGR 580
           E  N  D+ GR
Sbjct: 67  EGMNGQDLDGR 77

---

>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)|
          Length = 305

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
 Frame = +2

Query: 350 TAEPPEEAKV---YVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMS 520
           +A P   AKV   +VG L  DV    L + F Q G VE AE+I +++SG+ RGFGFV   
Sbjct: 88  SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147

Query: 521 TIEEADKA 544
             + ADKA
Sbjct: 148 NHDAADKA 155



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 22/64 (34%), Positives = 34/64 (53%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           E  +  K+++G L        L   F+  G +    V+ N ++ +SR FGFVT S +EEA
Sbjct: 2   ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61

Query: 536 DKAI 547
           D A+
Sbjct: 62  DAAM 65

---

>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription|
           termination factor ctf1)
          Length = 363

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 21/68 (30%), Positives = 40/68 (58%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V+VGN+PYDV  +++ ++F+Q G V+  +++ + E+G  +G+GF      E    A+   
Sbjct: 9   VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68

Query: 557 NRYDISGR 580
           N  ++  R
Sbjct: 69  NNSELGPR 76

---

>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 595

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
 Frame = +2

Query: 332 GGDAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGF 508
           G   G+ + PPE   ++++G LP D+  + L  L ++ G +    ++ +  +G +RG+ F
Sbjct: 42  GPPPGWDSTPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDF-NGNNRGYAF 100

Query: 509 VTMSTIEEADKAIETFNRYDI-SGRLL 586
           VT S  +EA  AI+  N Y+I +GRLL
Sbjct: 101 VTFSNKQEAKNAIKQLNNYEIRTGRLL 127

---

>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP|
           A1) (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 365

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 22/58 (37%), Positives = 36/58 (62%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           K++VG +  D + + L + F+Q G +EV E++ +R SG+ RGF FVT    +  DK +
Sbjct: 106 KIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163



 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 26/77 (33%), Positives = 45/77 (58%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           EP +  K+++G L ++   E L + F+Q G +    V+ +  S +SRGFGFVT  + +E 
Sbjct: 9   EPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEV 68

Query: 536 DKAIETFNRYDISGRLL 586
           D A+ T   + + GR++
Sbjct: 69  DAAM-TARPHKVDGRVV 84

---

>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein|
           23) (RNA-binding region-containing protein 4) (Splicing
           factor SF2)
          Length = 439

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 21/69 (30%), Positives = 47/69 (68%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           ++YVG+L +++  + L  +F+  G ++   ++ + ++G+S+G+GF+T S  E A +A+E 
Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323

Query: 554 FNRYDISGR 580
            N ++++GR
Sbjct: 324 LNGFELAGR 332

---

>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 28/71 (39%), Positives = 41/71 (57%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           E + +VG L +   +E L   F   G +  ++VI +RE+G+SRGFGFVT S+      AI
Sbjct: 7   EYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAI 66

Query: 548 ETFNRYDISGR 580
           E  N  ++ GR
Sbjct: 67  ENMNGKELDGR 77

---

>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
 Frame = +2

Query: 332 GGDAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGF 508
           G   G+   PPE   ++++G LP D+  + L  L ++ G +    ++ +  +G +RG+ F
Sbjct: 42  GPPPGWDTTPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAF 100

Query: 509 VTMSTIEEADKAIETFNRYDI-SGRLL 586
           VT S  +EA  AI+  N Y+I +GRLL
Sbjct: 101 VTFSNKQEAKNAIKQLNNYEIRNGRLL 127

---

>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
 Frame = +2

Query: 332 GGDAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGF 508
           G   G+ A PPE   ++++G LP D+  + L  L ++ G +    ++ +  +G +RG+ F
Sbjct: 42  GPPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAF 100

Query: 509 VTMSTIEEADKAIETFNRYDI-SGRLL 586
           VT S   EA  AI+  N Y+I +GRLL
Sbjct: 101 VTFSNKVEAKNAIKQLNNYEIRNGRLL 127

---

>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (Unwinding protein 1)
           (UP1) (Fragment)
          Length = 195

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 26/77 (33%), Positives = 45/77 (58%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           EP +  K+++G L ++   E L   F+Q G +    V+ +  + +SRGFGFVT +T+EE 
Sbjct: 8   EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 67

Query: 536 DKAIETFNRYDISGRLL 586
           D A+     + + GR++
Sbjct: 68  DAAMNA-RPHKVDGRVV 83



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 22/58 (37%), Positives = 34/58 (58%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           K++VG +  D +   L   F+Q G +EV E++ +R SG+ RGF FVT    +  DK +
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162

---

>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear|
           (Poly(A)-binding protein) (PABP) (ARS consensus-binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 576

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 30/70 (42%), Positives = 44/70 (62%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V NL   VD E+L + F   G +  A+V+   E+G+S+GFGFV  ST EEA KAI   
Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEK 381

Query: 557 NRYDISGRLL 586
           N+  ++G+ L
Sbjct: 382 NQQIVAGKPL 391



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 22/70 (31%), Positives = 38/70 (54%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YV N+  +   E+  +LF + G + V+  +     G+ +GFGFV     E+A KA+E  
Sbjct: 220 LYVKNINSETTDEQFQELFAKFGPI-VSASLEKDADGKLKGFGFVNYEKHEDAVKAVEAL 278

Query: 557 NRYDISGRLL 586
           N  +++G  L
Sbjct: 279 NDSELNGEKL 288



 Score = 38.9 bits (89), Expect = 0.011
 Identities = 24/71 (33%), Positives = 32/71 (45%)
 Frame = +2

Query: 371 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           A +YVG+L   V    L  +F   G V    V  +  +  S G+ +V  +  E   KAIE
Sbjct: 37  ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 96

Query: 551 TFNRYDISGRL 583
             N   I GRL
Sbjct: 97  QLNYTPIKGRL 107



 Score = 37.7 bits (86), Expect = 0.025
 Identities = 21/68 (30%), Positives = 38/68 (55%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +++ NL  D+D++ L   F   G + ++  I   E+G+S+GFGFV       A +AI+  
Sbjct: 127 IFIKNLHPDIDNKALYDTFSVFGDI-LSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 185

Query: 557 NRYDISGR 580
           N   ++G+
Sbjct: 186 NGMLLNGQ 193

---

>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 31/80 (38%), Positives = 45/80 (56%)
 Frame = +2

Query: 341 AGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMS 520
           AG  +E  ++A VYVG L   V    L +LF QAG V    +  +R +GQ +G+GFV   
Sbjct: 3   AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFL 62

Query: 521 TIEEADKAIETFNRYDISGR 580
           + E+AD AI+  N   + G+
Sbjct: 63  SEEDADYAIKIMNMIKLYGK 82



 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 18/64 (28%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
 Frame = +2

Query: 371 AKVYVGNLPYDVDSERLAQLFDQAGVV-EVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           A +++GNL  ++D + L   F   GV+ +  +++ + ++G S+G+ F+  ++ + +D AI
Sbjct: 100 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 159

Query: 548 ETFN 559
           E  N
Sbjct: 160 EAMN 163

---

>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA|
          Length = 101

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 27/68 (39%), Positives = 39/68 (57%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YVGNL YDV    L  +F + G V+  ++  +RE+G+ RGFGFV +    E   AIE  
Sbjct: 3   IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62

Query: 557 NRYDISGR 580
           +  +  GR
Sbjct: 63  DGAEWMGR 70

---

>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (HDP)
          Length = 319

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 26/77 (33%), Positives = 45/77 (58%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           EP +  K+++G L ++   E L   F+Q G +    V+ +  + +SRGFGFVT +T+EE 
Sbjct: 8   EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 67

Query: 536 DKAIETFNRYDISGRLL 586
           D A+     + + GR++
Sbjct: 68  DAAMNA-RPHKVDGRVV 83



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 22/58 (37%), Positives = 34/58 (58%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           K++VG +  D +   L   F+Q G +EV E++ +R SG+ RGF FVT    +  DK +
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162

---

>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed)
          Length = 319

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 26/77 (33%), Positives = 45/77 (58%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           EP +  K+++G L ++   E L   F+Q G +    V+ +  + +SRGFGFVT +T+EE 
Sbjct: 8   EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 67

Query: 536 DKAIETFNRYDISGRLL 586
           D A+     + + GR++
Sbjct: 68  DAAMNA-RPHKVDGRVV 83



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 22/58 (37%), Positives = 34/58 (58%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           K++VG +  D +   L   F+Q G +EV E++ +R SG+ RGF FVT    +  DK +
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162

---

>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1)
          Length = 371

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 26/77 (33%), Positives = 45/77 (58%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           EP +  K+++G L ++   E L   F+Q G +    V+ +  + +SRGFGFVT +T+EE 
Sbjct: 8   EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 67

Query: 536 DKAIETFNRYDISGRLL 586
           D A+     + + GR++
Sbjct: 68  DAAMNA-RPHKVDGRVV 83



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 22/58 (37%), Positives = 34/58 (58%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           K++VG +  D +   L   F+Q G +EV E++ +R SG+ RGF FVT    +  DK +
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162

---

>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2|
           (hnRNP A2(B))
          Length = 358

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 21/58 (36%), Positives = 37/58 (63%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           K++VG +  D +   L + F++ G +E  E+I +++SG+ RGFGFVT +  +  DK +
Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV 158



 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 25/77 (32%), Positives = 42/77 (54%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           E  +  K+++G L ++   E L   ++Q G +    V+ +  S +SRGFGFVT S + E 
Sbjct: 4   EKEQFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEV 63

Query: 536 DKAIETFNRYDISGRLL 586
           D A+     + I GR++
Sbjct: 64  DAAMSA-RPHTIDGRVV 79

---

>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 29/70 (41%), Positives = 43/70 (61%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V+V N+  D+D E+L +LF + G  E  +VI +  SG+S+GFGFV   T E A KA+   
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259

Query: 557 NRYDISGRLL 586
           +   I G++L
Sbjct: 260 HGKSIDGKVL 269



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 24/66 (36%), Positives = 37/66 (56%)
 Frame = +2

Query: 362 PEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 541
           P    +Y+ NL   ++ E+L + F   G +  A+V+   E GQ +GFG V  S+ EEA K
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATK 356

Query: 542 AIETFN 559
           A++  N
Sbjct: 357 AVDEMN 362

---

>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 29/70 (41%), Positives = 43/70 (61%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V+V N+  D+D E+L +LF + G  E  +VI +  SG+S+GFGFV   T E A KA+   
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259

Query: 557 NRYDISGRLL 586
           +   I G++L
Sbjct: 260 HGKSIDGKVL 269



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 24/66 (36%), Positives = 37/66 (56%)
 Frame = +2

Query: 362 PEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 541
           P    +Y+ NL   ++ E+L + F   G +  A+V+   E GQ +GFG V  S+ EEA K
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATK 356

Query: 542 AIETFN 559
           A++  N
Sbjct: 357 AVDEMN 362

---

>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 29/70 (41%), Positives = 43/70 (61%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V+V N+  D+D E+L +LF + G  E  +VI +  SG+S+GFGFV   T E A KA+   
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259

Query: 557 NRYDISGRLL 586
           +   I G++L
Sbjct: 260 HGKSIDGKVL 269



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 24/66 (36%), Positives = 37/66 (56%)
 Frame = +2

Query: 362 PEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 541
           P    +Y+ NL   ++ E+L + F   G +  A+V+   E GQ +GFG V  S+ EEA K
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATK 356

Query: 542 AIETFN 559
           A++  N
Sbjct: 357 AVDEMN 362

---

>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 29/70 (41%), Positives = 43/70 (61%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V+V N+  D+D E+L +LF + G  E  +VI +  SG+S+GFGFV   T E A KA+   
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259

Query: 557 NRYDISGRLL 586
           +   I G++L
Sbjct: 260 HGKSIDGKVL 269



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 24/66 (36%), Positives = 37/66 (56%)
 Frame = +2

Query: 362 PEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 541
           P    +Y+ NL   ++ E+L + F   G +  A+V+   E GQ +GFG V  S+ EEA K
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATK 356

Query: 542 AIETFN 559
           A++  N
Sbjct: 357 AVDEMN 362

---

>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 29/70 (41%), Positives = 43/70 (61%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V+V N+  D+D E+L +LF + G  E  +VI +  SG+S+GFGFV   T E A KA+   
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259

Query: 557 NRYDISGRLL 586
           +   I G++L
Sbjct: 260 HGKSIDGKVL 269



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 24/66 (36%), Positives = 37/66 (56%)
 Frame = +2

Query: 362 PEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 541
           P    +Y+ NL   ++ E+L + F   G +  A+V+   E GQ +GFG V  S+ EEA K
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATK 356

Query: 542 AIETFN 559
           A++  N
Sbjct: 357 AVDEMN 362

---

>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 29/70 (41%), Positives = 43/70 (61%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V+V N+  D+D E+L +LF + G  E  +VI +  SG+S+GFGFV   T E A KA+   
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259

Query: 557 NRYDISGRLL 586
           +   I G++L
Sbjct: 260 HGKSIDGKVL 269



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 24/66 (36%), Positives = 37/66 (56%)
 Frame = +2

Query: 362 PEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 541
           P    +Y+ NL   ++ E+L + F   G +  A+V+   E GQ +GFG V  S+ EEA K
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATK 356

Query: 542 AIETFN 559
           A++  N
Sbjct: 357 AVDEMN 362

---

>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1|
           (hnRNP A3(A))
          Length = 373

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
 Frame = +2

Query: 329 SGGDAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFG 505
           S  D G+  + PE+  K+++G L ++   + L + F+Q G +    V+ + ++ +SRGFG
Sbjct: 12  SSDDQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFG 71

Query: 506 FVTMSTIEEADKAIETFNRYDISGRLL 586
           FVT S +EE D ++     + + GR++
Sbjct: 72  FVTYSCVEEVDASMSA-RPHKVDGRVV 97



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 20/58 (34%), Positives = 32/58 (55%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           K++VG +  D +   L    +  G +E  EV+ +R+SG+ RGF FVT    +  DK +
Sbjct: 119 KIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176

---

>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 587

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
 Frame = +2

Query: 332 GGDAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGF 508
           G   G+ A PPE   ++++G LP D+  + L  L ++ G +    ++ +  +G +RG+ F
Sbjct: 42  GPPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAF 100

Query: 509 VTMSTIEEADKAIETFNRYDI-SGRLL 586
           VT S   EA  AI+  N Y+I +GRLL
Sbjct: 101 VTFSNKLEAKNAIKQLNNYEIRNGRLL 127

---

>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2|
           (hnRNP A3(B))
          Length = 385

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
 Frame = +2

Query: 329 SGGDAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFG 505
           S  D G+  + PE+  K+++G L ++   + L + F+Q G +    V+ + ++ +SRGFG
Sbjct: 12  SSDDQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFG 71

Query: 506 FVTMSTIEEADKAIETFNRYDISGRLL 586
           FVT S +EE D ++     + + GR++
Sbjct: 72  FVTYSCVEEVDASMSA-RPHKVDGRVV 97



 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 21/58 (36%), Positives = 33/58 (56%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           K++VG +  D +   L   F+  G +E  EV+ +R+SG+ RGF FVT    +  DK +
Sbjct: 119 KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176

---

>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 27/70 (38%), Positives = 45/70 (64%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +++ NL  +VD ERL   F   G +  A+++ + E G+S+GFGFV  +T EEA+KA+   
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEM 424

Query: 557 NRYDISGRLL 586
           N+  ++G+ L
Sbjct: 425 NQRMLAGKPL 434



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 23/73 (31%), Positives = 36/73 (49%)
 Frame = +2

Query: 362 PEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 541
           P  A +YVG L   V    L +LF+  G V    V  +  + +S G+ +V    +E+ +K
Sbjct: 77  PTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 136

Query: 542 AIETFNRYDISGR 580
           A++  N   I GR
Sbjct: 137 ALDELNYTLIKGR 149



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 21/70 (30%), Positives = 38/70 (54%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           VY+ NL  ++  +  + LF Q G +    ++ + ++ + RGFGFV  +  E A KA++  
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDEL 321

Query: 557 NRYDISGRLL 586
           N  +  G+ L
Sbjct: 322 NDKEYKGKKL 331



 Score = 38.1 bits (87), Expect = 0.019
 Identities = 23/71 (32%), Positives = 39/71 (54%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V++ NL   +D++ L   F   G +   +V  + E G ++G+GFV   ++E A+ AIE  
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIE-- 226

Query: 557 NRYDISGRLLN 589
               ++G LLN
Sbjct: 227 ---HVNGMLLN 234

---

>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Liver regeneration-related
           protein LRRG077)
          Length = 533

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
 Frame = +2

Query: 338 DAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVT 514
           D+ Y+ + P    +++VG +P D+  + L  LF++AG +    ++ +  +G +RG+ FVT
Sbjct: 60  DSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVT 119

Query: 515 MSTIEEADKAIETFNRYDI 571
             T E A +A++ +N ++I
Sbjct: 120 FCTKEAAQEAVKLYNNHEI 138

---

>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein|
           1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A)
           (PABP 1-A) (xPABP1-A)
          Length = 633

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 27/81 (33%), Positives = 48/81 (59%)
 Frame = +2

Query: 338 DAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTM 517
           +A   A   E   VY+ N   D++ ERL ++F + G     +V+ + ++G+S+GFGFV+ 
Sbjct: 180 EAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSF 238

Query: 518 STIEEADKAIETFNRYDISGR 580
              E+A KA++  N  D++G+
Sbjct: 239 ERHEDAQKAVDEMNGKDMNGK 259



 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 27/61 (44%), Positives = 37/61 (60%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YV NL   +D ERL + F   G +  A+V+   E G+S+GFGFV  S+ EEA KA+   
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353

Query: 557 N 559
           N
Sbjct: 354 N 354



 Score = 37.4 bits (85), Expect = 0.033
 Identities = 24/71 (33%), Positives = 40/71 (56%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +++ NL   +D++ L   F   G +   +V+ + E+G S+G+GFV   T E A++AI+  
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDKM 158

Query: 557 NRYDISGRLLN 589
           N     G LLN
Sbjct: 159 N-----GMLLN 164

---

>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1) (pp68)
          Length = 623

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
 Frame = +2

Query: 338 DAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVT 514
           D+ Y+ + P    +++VG +P D+  + L  LF++AG +    ++ +  +G +RG+ FVT
Sbjct: 150 DSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVT 209

Query: 515 MSTIEEADKAIETFNRYDI 571
             T E A +A++ +N ++I
Sbjct: 210 FCTKEAAQEAVKLYNNHEI 228

---

>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1)
          Length = 623

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
 Frame = +2

Query: 338 DAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVT 514
           D+ Y+ + P    +++VG +P D+  + L  LF++AG +    ++ +  +G +RG+ FVT
Sbjct: 150 DSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVT 209

Query: 515 MSTIEEADKAIETFNRYDI 571
             T E A +A++ +N ++I
Sbjct: 210 FCTKEAAQEAVKLYNNHEI 228

---

>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 353

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 21/58 (36%), Positives = 35/58 (60%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           K++VG +  D +   L   F++ G ++  E+I +R+SG+ RGFGFVT    +  DK +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170



 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 25/77 (32%), Positives = 43/77 (55%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           E  +  K+++G L ++   E L   ++Q G +    V+ +  S +SRGFGFVT S++ E 
Sbjct: 16  EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75

Query: 536 DKAIETFNRYDISGRLL 586
           D A+     + I GR++
Sbjct: 76  DAAMAA-RPHSIDGRVV 91

---

>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 373

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 28/70 (40%), Positives = 40/70 (57%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V NL  D D   L QLF   G V   +VI +  + + +GFGFVTM+  +EA  AI + 
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351

Query: 557 NRYDISGRLL 586
           N Y +  R+L
Sbjct: 352 NGYRLGDRVL 361



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 24/70 (34%), Positives = 39/70 (55%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           +A +YV  LP  +  + L QLF Q G +  + ++ ++ +G SRG GF+      EA++AI
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183

Query: 548 ETFNRYDISG 577
           +  N    SG
Sbjct: 184 KGLNGQKPSG 193



 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 22/69 (31%), Positives = 37/69 (53%)
 Frame = +2

Query: 353 AEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEE 532
           A    +  + V  LP ++  E    LF   G +E  +++ ++ +GQS G+GFV     ++
Sbjct: 33  ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92

Query: 533 ADKAIETFN 559
           A+KAI T N
Sbjct: 93  AEKAINTLN 101

---

>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 341

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 21/58 (36%), Positives = 35/58 (60%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           K++VG +  D +   L   F++ G ++  E+I +R+SG+ RGFGFVT    +  DK +
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158



 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 25/77 (32%), Positives = 43/77 (55%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           E  +  K+++G L ++   E L   ++Q G +    V+ +  S +SRGFGFVT S++ E 
Sbjct: 4   EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63

Query: 536 DKAIETFNRYDISGRLL 586
           D A+     + I GR++
Sbjct: 64  DAAMAA-RPHSIDGRVV 79

---

>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 406

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 25/83 (30%), Positives = 45/83 (54%)
 Frame = +2

Query: 332 GGDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFV 511
           G   G  ++  +  K++VG +P++     L + F + GVV    +IY+ E  + RGFGF+
Sbjct: 100 GWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 159

Query: 512 TMSTIEEADKAIETFNRYDISGR 580
           T    +  D+A+   + +DI G+
Sbjct: 160 TFEDEQSVDQAV-NMHFHDIMGK 181



 Score = 38.9 bits (89), Expect = 0.011
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = +2

Query: 350 TAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFV 511
           +A   E  K++VG L +    E L   F Q G V    ++ ++ + QSRGFGFV
Sbjct: 3   SAGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56

---

>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10|
          Length = 169

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 26/73 (35%), Positives = 41/73 (56%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           E + +VG L +      L + F Q G V  +++I +RE+G+SRGFGFVT    +    AI
Sbjct: 5   EYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 64

Query: 548 ETFNRYDISGRLL 586
           +  N  ++ GR +
Sbjct: 65  DEMNGKELDGRTI 77

---

>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 380

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 28/70 (40%), Positives = 40/70 (57%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V NL  D D   L QLF   G V   +VI +  + + +GFGFVTM+  +EA  AI + 
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358

Query: 557 NRYDISGRLL 586
           N Y +  R+L
Sbjct: 359 NGYRLGDRVL 368



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 24/70 (34%), Positives = 39/70 (55%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           +A +YV  LP  +  + L QLF Q G +  + ++ ++ +G SRG GF+      EA++AI
Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 190

Query: 548 ETFNRYDISG 577
           +  N    SG
Sbjct: 191 KGLNGQKPSG 200



 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 21/64 (32%), Positives = 36/64 (56%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           +  + V  LP ++  E    LF   G +E  +++ ++ +GQS G+GFV     ++A+KAI
Sbjct: 45  KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104

Query: 548 ETFN 559
            T N
Sbjct: 105 NTLN 108

---

>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 385

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 28/70 (40%), Positives = 40/70 (57%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V NL  D D   L QLF   G V   +VI +  + + +GFGFVTM+  +EA  AI + 
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363

Query: 557 NRYDISGRLL 586
           N Y +  R+L
Sbjct: 364 NGYRLGDRVL 373



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 24/70 (34%), Positives = 39/70 (55%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           +A +YV  LP  +  + L QLF Q G +  + ++ ++ +G SRG GF+      EA++AI
Sbjct: 136 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 195

Query: 548 ETFNRYDISG 577
           +  N    SG
Sbjct: 196 KGLNGQKPSG 205



 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 22/69 (31%), Positives = 37/69 (53%)
 Frame = +2

Query: 353 AEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEE 532
           A    +  + V  LP ++  E    LF   G +E  +++ ++ +GQS G+GFV     ++
Sbjct: 45  ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 104

Query: 533 ADKAIETFN 559
           A+KAI T N
Sbjct: 105 AEKAINTLN 113

---

>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I|
          Length = 297

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 24/71 (33%), Positives = 40/71 (56%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V  +   +  + L Q+F + G V    ++    +  SRGFGF++ ST+EEA  AI+  
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162

Query: 557 NRYDISGRLLN 589
           N  +  GR+LN
Sbjct: 163 NSQEFYGRVLN 173

---

>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 407

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 25/83 (30%), Positives = 45/83 (54%)
 Frame = +2

Query: 332 GGDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFV 511
           G   G  ++  +  K++VG +P++     L + F + GVV    +IY+ E  + RGFGF+
Sbjct: 100 GWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 159

Query: 512 TMSTIEEADKAIETFNRYDISGR 580
           T    +  D+A+   + +DI G+
Sbjct: 160 TFEDEQSVDQAV-NMHFHDIMGK 181



 Score = 38.5 bits (88), Expect = 0.015
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFV 511
           E  K++VG L +    E L   F Q G V    ++ ++ + QSRGFGFV
Sbjct: 8   EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56

---

>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)|
          Length = 359

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 27/70 (38%), Positives = 40/70 (57%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V NL  D D   L Q+F   G V   +VI +  + + +GFGFVTM+  +EA  AI + 
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query: 557 NRYDISGRLL 586
           N Y +  R+L
Sbjct: 338 NGYRLGDRVL 347



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 37/64 (57%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           +A +YV  LP  +  + L QLF Q G +  + ++ ++ +G SRG GF+      EA++AI
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183

Query: 548 ETFN 559
           +  N
Sbjct: 184 KGLN 187



 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 21/56 (37%), Positives = 34/56 (60%)
 Frame = +2

Query: 392 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFN 559
           LP ++  E L  LF   G +E  +++ ++ +GQS G+GFV     ++A+KAI T N
Sbjct: 46  LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN 101

---

>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2|
          Length = 359

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 27/70 (38%), Positives = 40/70 (57%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V NL  D D   L Q+F   G V   +VI +  + + +GFGFVTM+  +EA  AI + 
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query: 557 NRYDISGRLL 586
           N Y +  R+L
Sbjct: 338 NGYRLGDRVL 347



 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 25/74 (33%), Positives = 42/74 (56%)
 Frame = +2

Query: 338 DAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTM 517
           D+G T +   +  + V  LP ++  E L  LF   G +E  +++ ++ +GQS G+GFV  
Sbjct: 30  DSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87

Query: 518 STIEEADKAIETFN 559
              ++A+KAI T N
Sbjct: 88  IDPKDAEKAINTLN 101



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 37/64 (57%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           +A +YV  LP  +  + L QLF Q G +  + ++ ++ +G SRG GF+      EA++AI
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183

Query: 548 ETFN 559
           +  N
Sbjct: 184 KGLN 187

---

>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Hel-N1)
          Length = 359

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 27/70 (38%), Positives = 40/70 (57%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V NL  D D   L Q+F   G V   +VI +  + + +GFGFVTM+  +EA  AI + 
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query: 557 NRYDISGRLL 586
           N Y +  R+L
Sbjct: 338 NGYRLGDRVL 347



 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 25/74 (33%), Positives = 42/74 (56%)
 Frame = +2

Query: 338 DAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTM 517
           D+G T +   +  + V  LP ++  E L  LF   G +E  +++ ++ +GQS G+GFV  
Sbjct: 30  DSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87

Query: 518 STIEEADKAIETFN 559
              ++A+KAI T N
Sbjct: 88  IDPKDAEKAINTLN 101



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 37/64 (57%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           +A +YV  LP  +  + L QLF Q G +  + ++ ++ +G SRG GF+      EA++AI
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183

Query: 548 ETFN 559
           +  N
Sbjct: 184 KGLN 187

---

>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3)
          Length = 660

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 28/68 (41%), Positives = 41/68 (60%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           E  + A +Y+ NL   VD E+L ++F + G V  ++V+ N + G SRGFGFV  S  EEA
Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEA 385

Query: 536 DKAIETFN 559
            +A+   N
Sbjct: 386 LRALSEMN 393



 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 27/75 (36%), Positives = 38/75 (50%)
 Frame = +2

Query: 362 PEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 541
           P    VYV NLP ++  + L + F + GV+  A V+   +SG SR FGFV     E A  
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSA-VVMRDQSGNSRCFGFVNFECTEAAAS 284

Query: 542 AIETFNRYDISGRLL 586
           A+E  N   +   +L
Sbjct: 285 AVEKMNGISLGDDVL 299



 Score = 37.0 bits (84), Expect = 0.043
 Identities = 21/74 (28%), Positives = 38/74 (51%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           +  +++ NL   +D++ L + F   G +   +V  +  +G+S+G+GFV     E A  AI
Sbjct: 135 KGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAI 193

Query: 548 ETFNRYDISGRLLN 589
           +  N     G L+N
Sbjct: 194 DKLN-----GMLMN 202

---

>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 378

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +2

Query: 335 GDAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFV 511
           G+ G+  + PE+  K+++G L ++   + L + F++ G +    V+ + ++ +SRGFGFV
Sbjct: 22  GEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFV 81

Query: 512 TMSTIEEADKAI 547
           T S +EE D A+
Sbjct: 82  TYSCVEEVDAAM 93



 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 21/58 (36%), Positives = 34/58 (58%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           K++VG +  D +   L   F++ G +E  EV+ +R+SG+ RGF FVT    +  DK +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184

---

>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 634

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 25/65 (38%), Positives = 39/65 (60%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           VYV N   D D E+L + F+  G +   +V+ ++E G+S+GFGFV   T E A+ A++  
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243

Query: 557 NRYDI 571
           N  D+
Sbjct: 244 NGKDM 248



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 23/61 (37%), Positives = 34/61 (55%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YV NL   +D +RL   F   G +  A+V+ + E G+S+GFGFV  +   EA  A+   
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTEL 347

Query: 557 N 559
           N
Sbjct: 348 N 348



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 21/63 (33%), Positives = 34/63 (53%)
 Frame = +2

Query: 371 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           A +YVG+LP DV+   L   F  AG V    V  +  + +S G+ +V      +A++A++
Sbjct: 2   ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61

Query: 551 TFN 559
           T N
Sbjct: 62  TMN 64



 Score = 36.2 bits (82), Expect = 0.073
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V++ NL   +D++ +   F   G +   +V  + E G S+G+GFV   T E A+ +I+  
Sbjct: 92  VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTSIDKV 150

Query: 557 NRYDISGR 580
           N   ++G+
Sbjct: 151 NGMLLNGK 158

---

>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Mel-N1)
          Length = 360

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 27/70 (38%), Positives = 40/70 (57%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V NL  D D   L Q+F   G V   +VI +  + + +GFGFVTM+  +EA  AI + 
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338

Query: 557 NRYDISGRLL 586
           N Y +  R+L
Sbjct: 339 NGYRLGDRVL 348



 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 25/74 (33%), Positives = 42/74 (56%)
 Frame = +2

Query: 338 DAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTM 517
           D+G T +   +  + V  LP ++  E L  LF   G +E  +++ ++ +GQS G+GFV  
Sbjct: 30  DSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87

Query: 518 STIEEADKAIETFN 559
              ++A+KAI T N
Sbjct: 88  IDPKDAEKAINTLN 101



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 37/64 (57%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           +A +YV  LP  +  + L QLF Q G +  + ++ ++ +G SRG GF+      EA++AI
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183

Query: 548 ETFN 559
           +  N
Sbjct: 184 KGLN 187

---

>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 319

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 25/77 (32%), Positives = 45/77 (58%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           EP +  K+++G L ++   E L   F+Q G +    V+ +  + +SRGFGFVT +T+E+ 
Sbjct: 8   EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKV 67

Query: 536 DKAIETFNRYDISGRLL 586
           D A+     + + GR++
Sbjct: 68  DAAMNA-RPHKVDGRVV 83



 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 22/58 (37%), Positives = 33/58 (56%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           K++VG +  D +   L   F+Q G +EV E++ +R SG+ RGF FVT       DK +
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV 162

---

>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +2

Query: 335 GDAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFV 511
           G+ G+  + PE+  K+++G L ++   + L + F++ G +    V+ + ++ +SRGFGFV
Sbjct: 22  GEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFV 81

Query: 512 TMSTIEEADKAI 547
           T S +EE D A+
Sbjct: 82  TYSCVEEVDAAM 93



 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 21/58 (36%), Positives = 34/58 (58%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           K++VG +  D +   L   F++ G +E  EV+ +R+SG+ RGF FVT    +  DK +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184

---

>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +2

Query: 335 GDAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFV 511
           G+ G+  + PE+  K+++G L ++   + L + F++ G +    V+ + ++ +SRGFGFV
Sbjct: 22  GEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFV 81

Query: 512 TMSTIEEADKAI 547
           T S +EE D A+
Sbjct: 82  TYSCVEEVDAAM 93



 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 21/58 (36%), Positives = 34/58 (58%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           K++VG +  D +   L   F++ G +E  EV+ +R+SG+ RGF FVT    +  DK +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184

---

>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)|
          Length = 326

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 26/70 (37%), Positives = 40/70 (57%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +++ NL  D D   L Q+F   G V   +VI +  + + +GFGFVTM+  EEA  AI + 
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305

Query: 557 NRYDISGRLL 586
           N Y +  ++L
Sbjct: 306 NGYRLGDKIL 315



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 20/76 (26%), Positives = 42/76 (55%)
 Frame = +2

Query: 350 TAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIE 529
           ++E  ++A +Y+  LP  +  + +  +F + G +  + V+ ++ +G SRG  F+      
Sbjct: 99  SSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRS 158

Query: 530 EADKAIETFNRYDISG 577
           EA++AI +FN +   G
Sbjct: 159 EAEEAITSFNGHKPPG 174

---

>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 758

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 23/64 (35%), Positives = 38/64 (59%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++VG LP    SE+L +LF Q G V+   V+  + S   RGFG+VT S +E+  +A++  
Sbjct: 5   LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64

Query: 557 NRYD 568
             ++
Sbjct: 65  TTFE 68



 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 24/72 (33%), Positives = 38/72 (52%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           ++A++ + NL +    + L  +F Q G V     I  +  G+ RGFGFV    + EA KA
Sbjct: 111 KKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVN-IPRKPDGKMRGFGFVQFKNLLEAGKA 169

Query: 545 IETFNRYDISGR 580
           ++  N  +I GR
Sbjct: 170 LKGMNMKEIKGR 181

---

>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2|
           (G-strand-binding protein 2) (RAP1 localization factor
           6)
          Length = 427

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 28/71 (39%), Positives = 45/71 (63%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           +V++ NLPY ++ + L  +F + G V  A+V  +  +G SRGFG V   T +E  +AI+T
Sbjct: 220 EVFIINLPYSMNWQSLKDMFKECGHVLRADVELDF-NGFSRGFGSVIYPTEDEMIRAIDT 278

Query: 554 FNRYDISGRLL 586
           FN  ++ GR+L
Sbjct: 279 FNGMEVEGRVL 289



 Score = 38.1 bits (87), Expect = 0.019
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +Y  NLP+      L  LF   G +  AE +  +E+GQ  G   V    + +AD  I+  
Sbjct: 351 IYCSNLPFSTARSDLFDLFGPIGKINNAE-LKPQENGQPTGVAVVEYENLVDADFCIQKL 409

Query: 557 NRYDISG 577
           N Y+  G
Sbjct: 410 NNYNYGG 416

---

>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1) (Proline-rich Vg1
           mRNA-binding protein)
          Length = 360

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 23/69 (33%), Positives = 41/69 (59%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K++VG +P++     L + F++ GVV    +IY+ E  + RGFGF+T    +  D+A+  
Sbjct: 115 KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-N 173

Query: 554 FNRYDISGR 580
            + +DI G+
Sbjct: 174 MHFHDIMGK 182



 Score = 38.5 bits (88), Expect = 0.015
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFV 511
           E  K++VG L +    E L   F Q G V    ++ ++ + QSRGFGFV
Sbjct: 8   EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56

---

>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X|
           protein 1)
          Length = 415

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 26/81 (32%), Positives = 45/81 (55%)
 Frame = +2

Query: 338 DAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTM 517
           D   ++ P    +++V N+P+      L  +F++ GVV   E+I+N     S+GFGFVTM
Sbjct: 142 DPSTSSGPDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTM 199

Query: 518 STIEEADKAIETFNRYDISGR 580
              ++A++A +  +   I GR
Sbjct: 200 ERPQDAERARQELHGSMIEGR 220

---

>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like|
           generic protein) (MelG)
          Length = 326

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 25/70 (35%), Positives = 40/70 (57%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +++ NL  D D   L Q+F   G V   +VI +  + + +GFGFVTM+  EE+  AI + 
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASL 305

Query: 557 NRYDISGRLL 586
           N Y +  ++L
Sbjct: 306 NGYRLGDKIL 315

---

>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)|
          Length = 367

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 27/70 (38%), Positives = 40/70 (57%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V NL  + D   L QLF   G V   +VI +  + + +GFGFVTM+  +EA  AI + 
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query: 557 NRYDISGRLL 586
           N Y +  R+L
Sbjct: 346 NGYRLGERVL 355



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 23/69 (33%), Positives = 37/69 (53%)
 Frame = +2

Query: 353 AEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEE 532
           A    +  + V  LP ++  +    LF   G +E  +++ ++ +GQS G+GFV  S   +
Sbjct: 33  ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPND 92

Query: 533 ADKAIETFN 559
           ADKAI T N
Sbjct: 93  ADKAINTLN 101



 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 21/64 (32%), Positives = 37/64 (57%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           +A +YV  LP  +  + + QLF Q G +  + ++ ++ +G SRG GF+      EA++AI
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAI 183

Query: 548 ETFN 559
           +  N
Sbjct: 184 KGLN 187

---

>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic|
           cerebellar degeneration-associated antigen)
           (Paraneoplastic limbic encephalitis antigen 21)
          Length = 367

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 27/70 (38%), Positives = 40/70 (57%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V NL  + D   L QLF   G V   +VI +  + + +GFGFVTM+  +EA  AI + 
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query: 557 NRYDISGRLL 586
           N Y +  R+L
Sbjct: 346 NGYRLGERVL 355



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 23/69 (33%), Positives = 37/69 (53%)
 Frame = +2

Query: 353 AEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEE 532
           A    +  + V  LP ++  +    LF   G +E  +++ ++ +GQS G+GFV  S   +
Sbjct: 33  ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPND 92

Query: 533 ADKAIETFN 559
           ADKAI T N
Sbjct: 93  ADKAINTLN 101



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 21/64 (32%), Positives = 37/64 (57%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           +A +YV  LP  +  + + QLF Q G +  + ++ ++ +G SRG GF+      EA++AI
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183

Query: 548 ETFN 559
           +  N
Sbjct: 184 KGLN 187

---

>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial|
           precursor (AtGRP2)
          Length = 158

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 26/69 (37%), Positives = 39/69 (56%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K+++G L +  D   L   F   G V  A+VI +RE+G+SRGFGFV  +    A  AI  
Sbjct: 36  KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95

Query: 554 FNRYDISGR 580
            +  +++GR
Sbjct: 96  MDGKELNGR 104

---

>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = +2

Query: 371 AKVYVGNLPYDVDSERLAQLFDQAGVV-EVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           A ++VGNL  +VD + L   F   GV+ +V +++ + +SG S+GF F+  ++ E +D A+
Sbjct: 100 ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 159

Query: 548 ETFNRYDISGRLL 586
           E  N   +  R +
Sbjct: 160 EAMNGQFLCNRAI 172



 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 28/80 (35%), Positives = 40/80 (50%)
 Frame = +2

Query: 341 AGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMS 520
           AG   E  ++A +YVG L   V    L +L  QAG V    +  +R +   +GFGFV   
Sbjct: 3   AGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFM 62

Query: 521 TIEEADKAIETFNRYDISGR 580
             E+AD AI+  N   + G+
Sbjct: 63  GEEDADYAIKILNMIKLYGK 82

---

>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage|
           factor IB) (CFIB)
          Length = 534

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 21/65 (32%), Positives = 39/65 (60%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           E  +  K++VG +  DV  +   + F Q G +  A+++ ++++GQSRGFGFVT  + +  
Sbjct: 238 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 297

Query: 536 DKAIE 550
           D+  +
Sbjct: 298 DRVCQ 302



 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 19/75 (25%), Positives = 44/75 (58%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           E  K+++G L +D   + L + F + G V   +++ +  +G+SRGFGF++       D+ 
Sbjct: 157 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEV 216

Query: 545 IETFNRYDISGRLLN 589
           ++T  ++ + G++++
Sbjct: 217 VKT--QHILDGKVID 229

---

>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)|
          Length = 633

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 23/72 (31%), Positives = 43/72 (59%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           +P    +V+VG +P D+  + L  LF++AG +    ++ +  SGQ+RG+ F+T    E A
Sbjct: 160 QPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAA 219

Query: 536 DKAIETFNRYDI 571
            +A++  + Y+I
Sbjct: 220 QEAVKLCDSYEI 231

---

>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 749

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 22/64 (34%), Positives = 38/64 (59%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++VG LP    S++L +LF Q G V+   V+  + S   RGFG+VT S +E+  +A++  
Sbjct: 5   LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64

Query: 557 NRYD 568
             ++
Sbjct: 65  TTFE 68

---

>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 519

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 22/70 (31%), Positives = 40/70 (57%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +++ NL  + +   L QLF   G V+  +++ +  + Q +G+GFV+M+  +EA  AI   
Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 499

Query: 557 NRYDISGRLL 586
           N Y +  R+L
Sbjct: 500 NGYTMGNRVL 509



 Score = 36.2 bits (82), Expect = 0.073
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +2

Query: 371 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESG-QSRGFGFVTMSTIEEADKAI 547
           A +YV  LP  +  + L  +F   G +  + ++ N  +  Q++G GF+     EEA +AI
Sbjct: 284 ANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAI 343

Query: 548 ETFN 559
              N
Sbjct: 344 IALN 347



 Score = 34.3 bits (77), Expect = 0.28
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
 Frame = +2

Query: 332 GGDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRES--------- 484
           G   G          + V  LP  +  + +  LF   G +E  ++I ++           
Sbjct: 172 GAQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQ 231

Query: 485 ----GQSRGFGFVTMSTIEEADKAIETFN 559
               GQS G+GFV     ++A++A+   N
Sbjct: 232 APSKGQSLGYGFVNYVRPQDAEQAVNVLN 260

---

>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 483

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 22/70 (31%), Positives = 40/70 (57%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +++ NL  + +   L QLF   G V+  +++ +  + Q +G+GFV+M+  +EA  AI   
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463

Query: 557 NRYDISGRLL 586
           N Y +  R+L
Sbjct: 464 NGYTMGNRVL 473



 Score = 36.2 bits (82), Expect = 0.073
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +2

Query: 371 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESG-QSRGFGFVTMSTIEEADKAI 547
           A +YV  LP  +  + L  +F   G +  + ++ N  +  Q++G GF+     EEA +AI
Sbjct: 248 ANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAI 307

Query: 548 ETFN 559
              N
Sbjct: 308 IALN 311



 Score = 35.8 bits (81), Expect = 0.095
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
 Frame = +2

Query: 329 SGGDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRES-------- 484
           SG   G          + V  LP  +  + +  LF   G +E  ++I ++          
Sbjct: 135 SGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNP 194

Query: 485 -----GQSRGFGFVTMSTIEEADKAIETFN 559
                GQS G+GFV     ++A++A+   N
Sbjct: 195 QAPSKGQSLGYGFVNYVRPQDAEQAVNVLN 224

---

>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)|
          Length = 419

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 24/72 (33%), Positives = 40/72 (55%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K++VGNL  +  +E +  LF Q G +   +++ N        FGFV M +  EAD+AI+ 
Sbjct: 3   KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKN--------FGFVHMDSKSEADEAIQN 54

Query: 554 FNRYDISGRLLN 589
            + Y ++G  +N
Sbjct: 55  LHHYMLNGMAMN 66

---

>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660|
           (Poly(A)-binding protein At2g36660) (PABP)
          Length = 609

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 27/72 (37%), Positives = 42/72 (58%)
 Frame = +2

Query: 371 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           + +YV N+   V  E L + F Q G +   +++ + E G+S+GFGFV  ST EEA  A++
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVK 362

Query: 551 TFNRYDISGRLL 586
           TF+     G+ L
Sbjct: 363 TFHGQMFHGKPL 374



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 23/61 (37%), Positives = 33/61 (54%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V+V NLP  V +  L  +F + G +   +V    E G+SRG+GFV     + A  AI+T 
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTL 172

Query: 557 N 559
           N
Sbjct: 173 N 173



 Score = 31.6 bits (70), Expect = 1.8
 Identities = 19/75 (25%), Positives = 37/75 (49%)
 Frame = +2

Query: 362 PEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 541
           P  A +YVG+L   V    L   F +   +    +  +  SG+S  +G+    + ++A+ 
Sbjct: 21  PVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANL 80

Query: 542 AIETFNRYDISGRLL 586
           AIE  N   ++G+++
Sbjct: 81  AIEKKNNSLLNGKMI 95

---

>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1|
           (hnRNP A2(A))
          Length = 346

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 26/77 (33%), Positives = 43/77 (55%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           E  +  K+++G L ++   E L   ++Q G +    V+ +  S +SRGFGFVT S + E 
Sbjct: 4   EKEQFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEV 63

Query: 536 DKAIETFNRYDISGRLL 586
           D A+ T   + I GR++
Sbjct: 64  DAAMAT-RPHTIDGRVV 79



 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 19/58 (32%), Positives = 35/58 (60%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           K++VG +  D +   L + F++ G ++  E+I +++SG+ RGF FVT    +  DK +
Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIV 158

---

>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein
           F41)
          Length = 486

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 27/84 (32%), Positives = 45/84 (53%)
 Frame = +2

Query: 335 GDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVT 514
           G AG   E PE A +++ +LP +   + L Q+F   G V  A+V  ++++  S+ FGFV+
Sbjct: 389 GAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 448

Query: 515 MSTIEEADKAIETFNRYDISGRLL 586
                 A  AI++ N + I  + L
Sbjct: 449 YDNPVSAQAAIQSMNGFQIGMKRL 472



 Score = 33.1 bits (74), Expect = 0.62
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +2

Query: 335 GDAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESG--QSRGFG 505
           G   +  +P  +A K++VG +P     + L +LF+Q G V    ++ +R     QS+G  
Sbjct: 3   GTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCC 62

Query: 506 FVTMSTIEEADKA 544
           FVT  T + A +A
Sbjct: 63  FVTFYTRKAALEA 75



 Score = 30.8 bits (68), Expect = 3.1
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           E+ K+++G +        +  +F   G +E   ++   + G SRG  FVT +T   A  A
Sbjct: 106 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRTMAQTA 164

Query: 545 IETFNR 562
           I+  ++
Sbjct: 165 IKAMHQ 170

---

>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding
           protein) (EDEN-BP)
          Length = 486

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 27/84 (32%), Positives = 45/84 (53%)
 Frame = +2

Query: 335 GDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVT 514
           G AG   E PE A +++ +LP +   + L Q+F   G V  A+V  ++++  S+ FGFV+
Sbjct: 389 GAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 448

Query: 515 MSTIEEADKAIETFNRYDISGRLL 586
                 A  AI++ N + I  + L
Sbjct: 449 YDNPVSAQAAIQSMNGFQIGMKRL 472



 Score = 33.5 bits (75), Expect = 0.47
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +2

Query: 335 GDAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESG--QSRGFG 505
           G   +  +P  +A K++VG +P     + L +LF+Q G V    V+ +R     QS+G  
Sbjct: 3   GTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCC 62

Query: 506 FVTMSTIEEADKA 544
           FVT  T + A +A
Sbjct: 63  FVTFYTRKAALEA 75



 Score = 30.8 bits (68), Expect = 3.1
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           E+ K+++G +        +  +F   G +E   ++   + G SRG  FVT +T   A  A
Sbjct: 106 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTA 164

Query: 545 IETFNR 562
           I+  ++
Sbjct: 165 IKAMHQ 170

---

>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2|
          Length = 991

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 26/71 (36%), Positives = 41/71 (57%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V  L     +  L  LF + G V  A+V+ N  S  +R +GFVTMST +EA K I   
Sbjct: 453 LWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 512

Query: 557 NRYDISGRLLN 589
           +R ++ GR+++
Sbjct: 513 HRTELHGRMIS 523

---

>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 25/78 (32%), Positives = 43/78 (55%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           E  E  K++VG L ++   E L++ F + G +    V+ N ESG+SRGFGFVT +     
Sbjct: 2   EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61

Query: 536 DKAIETFNRYDISGRLLN 589
           +  ++    + + GR ++
Sbjct: 62  NHVLQN-GPHTLDGRTID 78



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 23/64 (35%), Positives = 36/64 (56%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           KV++G LP +V    L   F++ G V    ++Y++E  +SRGFGF++    EE+     T
Sbjct: 97  KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFE--EESSVEHVT 154

Query: 554 FNRY 565
             RY
Sbjct: 155 NERY 158

---

>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2|
          Length = 953

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 26/71 (36%), Positives = 41/71 (57%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V  L     +  L  LF + G V  A+V+ N  S  +R +GFVTMST +EA K I   
Sbjct: 409 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 468

Query: 557 NRYDISGRLLN 589
           +R ++ GR+++
Sbjct: 469 HRTELHGRMIS 479

---

>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1|
          Length = 397

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 25/77 (32%), Positives = 40/77 (51%)
 Frame = +2

Query: 350 TAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIE 529
           T    +  +++V N+P+      L Q+F Q G +   E+I+N     S+GFGFVT     
Sbjct: 110 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSA 167

Query: 530 EADKAIETFNRYDISGR 580
           +AD+A E  +   + GR
Sbjct: 168 DADRAREKLHGTVVEGR 184

---

>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1|
          Length = 396

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 25/77 (32%), Positives = 40/77 (51%)
 Frame = +2

Query: 350 TAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIE 529
           T    +  +++V N+P+      L Q+F Q G +   E+I+N     S+GFGFVT     
Sbjct: 109 TESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSA 166

Query: 530 EADKAIETFNRYDISGR 580
           +AD+A E  +   + GR
Sbjct: 167 DADRAREKLHGTVVEGR 183

---

>SAP49_SCHPO (O14102) Spliceosome-associated protein 49|
          Length = 335

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 25/63 (39%), Positives = 35/63 (55%)
 Frame = +2

Query: 371 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           A ++VGNL   VD   L   F   G +  A  +   E+G+S+G+GFV+  + E AD AIE
Sbjct: 99  ANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIE 158

Query: 551 TFN 559
             N
Sbjct: 159 AMN 161



 Score = 35.0 bits (79), Expect = 0.16
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           ++A +Y+GNL   V    L +L  QAG V    +  +R      GFGF      ++ + A
Sbjct: 9   QDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYA 68

Query: 545 IETFNRYDISGR 580
            +  N+  + G+
Sbjct: 69  CQILNQVKLFGK 80

---

>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 22/70 (31%), Positives = 42/70 (60%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++VG+L  +VD E L   F          V+++ ++G SRG+GFV+ ++ ++A  A+++ 
Sbjct: 163 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 222

Query: 557 NRYDISGRLL 586
              D++GR L
Sbjct: 223 QGQDLNGRPL 232



 Score = 29.6 bits (65), Expect = 6.8
 Identities = 20/76 (26%), Positives = 29/76 (38%)
 Frame = +2

Query: 359 PPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEAD 538
           PP     Y+GN+P+      L  LF   G       I + +    +G  F+   T E+A 
Sbjct: 336 PPRVTTAYIGNIPHFATEADLIPLFQNFG------FILDFKHYPEKGCCFIKYDTHEQAA 389

Query: 539 KAIETFNRYDISGRLL 586
             I     +   GR L
Sbjct: 390 VCIVALANFPFQGRNL 405



 Score = 29.6 bits (65), Expect = 6.8
 Identities = 16/70 (22%), Positives = 35/70 (50%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YVGNL   +  + L Q F   G +   +++ ++ + ++  + FV      +A+ A++T 
Sbjct: 76  LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTL 134

Query: 557 NRYDISGRLL 586
           N   I   ++
Sbjct: 135 NGKQIENNIV 144

---

>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 428

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 24/74 (32%), Positives = 38/74 (51%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           ++  V+VGNLPY VD   L + F   G +    ++ N  +G  RGFG+V     +    A
Sbjct: 283 DKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLA 342

Query: 545 IETFNRYDISGRLL 586
           ++  N  ++ GR L
Sbjct: 343 LK-LNNSELMGRKL 355

---

>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor|
          Length = 212

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 23/68 (33%), Positives = 36/68 (52%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K+Y+G L    D   L   F     V  A V+ N+ +G+SRG+GFV   + + A+ AI  
Sbjct: 32  KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91

Query: 554 FNRYDISG 577
            N  +++G
Sbjct: 92  MNGQELNG 99

---

>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 21/75 (28%), Positives = 40/75 (53%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           E  ++++ N+ Y+   E    LF Q G +E   +  +  +G+S+GF +V     E+A +A
Sbjct: 308 ETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRA 367

Query: 545 IETFNRYDISGRLLN 589
             + ++    GRLL+
Sbjct: 368 YRSLDKQIFQGRLLH 382



 Score = 37.4 bits (85), Expect = 0.033
 Identities = 22/86 (25%), Positives = 42/86 (48%)
 Frame = +2

Query: 329 SGGDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGF 508
           +G  A    +  + +K+ + NLP++   + L +LF   G ++   V    +   +RGF F
Sbjct: 703 TGTSASSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQS-ARGFAF 761

Query: 509 VTMSTIEEADKAIETFNRYDISGRLL 586
           V  + ++EA+ A+       + GR L
Sbjct: 762 VEFNLMKEAETAMSQLEGVHLLGRRL 787



 Score = 35.8 bits (81), Expect = 0.095
 Identities = 18/64 (28%), Positives = 37/64 (57%)
 Frame = +2

Query: 371 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           +++ V  LP     E+L + F + G V   +++  R +G+SR F F+   + + A++A++
Sbjct: 2   SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKR-NGESRKFAFIGYKSADAAERAVK 60

Query: 551 TFNR 562
            FN+
Sbjct: 61  YFNK 64

---

>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)|
           (Hexaribonucleotide-binding protein 2) (Repressor of
           tamoxifen transcriptional activity)
          Length = 390

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 24/69 (34%), Positives = 38/69 (55%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           +++V N+P+      L Q+F Q G +   E+I+N     S+GFGFVT     +AD+A E 
Sbjct: 122 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREK 179

Query: 554 FNRYDISGR 580
            +   + GR
Sbjct: 180 LHGTVVEGR 188

---

>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor|
           B1) (SAF-B)
          Length = 931

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 25/70 (35%), Positives = 40/70 (57%)
 Frame = +2

Query: 380 YVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFN 559
           +V  L     +  L  LF + G V  A+V+ N  S  +R +GFVTMST EEA K I   +
Sbjct: 431 WVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 490

Query: 560 RYDISGRLLN 589
           + ++ G++++
Sbjct: 491 KTELHGKMIS 500

---

>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor|
           B1) (SAF-B) (HSP27 estrogen response element-TATA
           box-binding protein) (HSP27 ERE-TATA-binding protein)
          Length = 915

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 25/70 (35%), Positives = 40/70 (57%)
 Frame = +2

Query: 380 YVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFN 559
           +V  L     +  L  LF + G V  A+V+ N  S  +R +GFVTMST EEA K I   +
Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468

Query: 560 RYDISGRLLN 589
           + ++ G++++
Sbjct: 469 KTELHGKMIS 478

---

>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 23/72 (31%), Positives = 39/72 (54%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           E+ KVYVGNLP DV  + +  +F + G ++  ++    +SG+   F FV      +A+ A
Sbjct: 7   EDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI----KSGRGPAFAFVEFEDHRDAEDA 62

Query: 545 IETFNRYDISGR 580
           +   + Y+  GR
Sbjct: 63  VRARDGYEFDGR 74

---

>BOLL_MACFA (Q8WP23) Protein boule-like|
          Length = 283

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 21/72 (29%), Positives = 42/72 (58%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           +++VG + +  +   L + F Q G V+  +++ +R +G S+G+GFVT  T E+A K ++ 
Sbjct: 34  RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92

Query: 554 FNRYDISGRLLN 589
             + +   + LN
Sbjct: 93  AEKLNYKDKKLN 104

---

>BOLL_HUMAN (Q8N9W6) Protein boule-like|
          Length = 283

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 21/72 (29%), Positives = 42/72 (58%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           +++VG + +  +   L + F Q G V+  +++ +R +G S+G+GFVT  T E+A K ++ 
Sbjct: 34  RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92

Query: 554 FNRYDISGRLLN 589
             + +   + LN
Sbjct: 93  AEKLNYKDKKLN 104

---

>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic|
           region
          Length = 220

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 23/70 (32%), Positives = 39/70 (55%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YV  LP+    + L++ F Q G ++   +  N+++G SR +GF+     E+A  A E+ 
Sbjct: 93  IYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESM 152

Query: 557 NRYDISGRLL 586
           N Y + G LL
Sbjct: 153 NNYLLMGHLL 162

---

>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog|
          Length = 342

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 25/77 (32%), Positives = 41/77 (53%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           EP    K+++G L Y    E L Q F+Q G +    V+ + ++ +SRGFGF+T S     
Sbjct: 12  EPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMV 71

Query: 536 DKAIETFNRYDISGRLL 586
           D A +    + + GR++
Sbjct: 72  DDA-QNARPHKVDGRVV 87



 Score = 38.9 bits (89), Expect = 0.011
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 541
           K++VG +  +++   L   F Q G V  A ++ ++E+ + RGF FV     +  DK
Sbjct: 109 KLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDK 164

---

>BOLL_MOUSE (Q924M5) Protein boule-like|
          Length = 281

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 20/72 (27%), Positives = 42/72 (58%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           +++VG + +  +   L + F Q G V+  +++ +R +G S+G+GF+T  T E+A K ++ 
Sbjct: 34  RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQE 92

Query: 554 FNRYDISGRLLN 589
             + +   + LN
Sbjct: 93  AEKLNYKDKKLN 104

---

>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 375

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 22/74 (29%), Positives = 38/74 (51%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           ++  V+VGNLPY ++   L + F   G +    ++ N  +G  RGFG+V     +    A
Sbjct: 289 DKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLA 348

Query: 545 IETFNRYDISGRLL 586
           ++  N  ++ GR L
Sbjct: 349 LK-LNNSELMGRKL 361

---

>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 25/66 (37%), Positives = 35/66 (53%)
 Frame = +2

Query: 362 PEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 541
           P    VYV NLP ++  + L + F + G +  A V+   +SG SR FGFV   + E A  
Sbjct: 222 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSA-VVMKDQSGNSRSFGFVNFVSPEAAAV 280

Query: 542 AIETFN 559
           A+E  N
Sbjct: 281 AVEKMN 286



 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 26/68 (38%), Positives = 40/68 (58%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           E  + + +Y+ NL   V+ E+L ++F + G V   +V+ N + G SRGFGFV  S  EEA
Sbjct: 323 EKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEA 381

Query: 536 DKAIETFN 559
             A++  N
Sbjct: 382 LLAMKEMN 389



 Score = 36.6 bits (83), Expect = 0.056
 Identities = 23/74 (31%), Positives = 37/74 (50%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           +  V++ NL   +D++ L + F   G +   +V  +   G+S+G+GFV     E A  AI
Sbjct: 131 KGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAI 189

Query: 548 ETFNRYDISGRLLN 589
           +  N     G LLN
Sbjct: 190 DKLN-----GMLLN 198



 Score = 34.7 bits (78), Expect = 0.21
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = +2

Query: 371 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           + +YVG+L   V+   L  LF+Q   V    V  +  + +S G+ +V  +  E+A +A+E
Sbjct: 45  SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 103

Query: 551 TFNRYDISGR 580
           + N   I  R
Sbjct: 104 SLNYAPIRDR 113

---

>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 729

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +2

Query: 353 AEPPEEAKVYVGNLPYDVDSERLAQLF-DQAGVVEVAEVIYNRESGQSRGFGFVTMSTIE 529
           A P +  + ++ N+P+DV  + L  L  ++ G V   E++ + E G+SRG   V     E
Sbjct: 64  ANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEE 122

Query: 530 EADKAIETFNRYDISGRLL 586
              KA E  N++ +SGR L
Sbjct: 123 SMKKAAEVLNKHSLSGRPL 141



 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +2

Query: 332 GGDAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGF 508
           GG  G+      +A +++V NLP+D   + L   F++ G V  A++    E+G+S+G G 
Sbjct: 638 GGAGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGV 695

Query: 509 VTMSTIEEADKAIETFNRYDISGR 580
           V   + E A++A    N   +SGR
Sbjct: 696 VKFESPEVAERACRMMNGMKLSGR 719

---

>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4|
           protein)
          Length = 689

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +2

Query: 353 AEPPEEAKVYVGNLPYDVDSERLAQLF-DQAGVVEVAEVIYNRESGQSRGFGFVTMSTIE 529
           A P +  + ++ N+P+DV  + L  L  ++ G V   E++ + E G+SRG   V     E
Sbjct: 63  ANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEE 121

Query: 530 EADKAIETFNRYDISGRLL 586
              KA E  N++ +SGR L
Sbjct: 122 SMKKAAEVLNKHSLSGRPL 140



 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +2

Query: 332 GGDAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGF 508
           GG  G+      +A +++V NLP+D   + L   F++ G V  A++    E+G+S+G G 
Sbjct: 598 GGAGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGV 655

Query: 509 VTMSTIEEADKAIETFNRYDISGR 580
           V   + E A++A    N   +SGR
Sbjct: 656 VKFESPEVAERACRMMNGMKLSGR 679

---

>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)|
          Length = 429

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 23/61 (37%), Positives = 35/61 (57%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++VGNL YD   E L + F Q G V  A++I +R  G  RG G V  +  ++ D+AI  +
Sbjct: 138 IFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGMGTVEFTNSDDVDRAIRQY 195

Query: 557 N 559
           +
Sbjct: 196 D 196



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +Y  NLP+      L  LF+  G V  AE+ Y+   G   G   V    +++AD  IE  
Sbjct: 353 IYCSNLPFSTAKSDLYDLFETIGKVNNAELRYD-SKGAPTGIAVVEYDNVDDADVCIERL 411

Query: 557 NRYDISG 577
           N Y+  G
Sbjct: 412 NNYNYGG 418

---

>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 728

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +2

Query: 332 GGDAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGF 508
           GG  G+      +A +++V NLP+D   + L   F++ G V  A++    E+G+S+G G 
Sbjct: 637 GGAGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGV 694

Query: 509 VTMSTIEEADKAIETFNRYDISGR 580
           V   + E A++A    N   +SGR
Sbjct: 695 VKFESPEVAERACRMMNGMKLSGR 718



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +2

Query: 353 AEPPEEAKVYVGNLPYDVDSERLAQLF-DQAGVVEVAEVIYNRESGQSRGFGFVTMSTIE 529
           + P +  + ++ N+P+DV  + L  L  ++ G V   E++ + E G+SRG   V     E
Sbjct: 63  SNPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEE 121

Query: 530 EADKAIETFNRYDISGRLL 586
              KA E  N++ +SGR L
Sbjct: 122 SMKKAAEVLNKHSLSGRPL 140

---

>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 30/82 (36%), Positives = 43/82 (52%)
 Frame = +2

Query: 332 GGDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFV 511
           GG  G +A+      ++V  L  D   E L + FD  G V  A ++ +R++G S+GFGFV
Sbjct: 492 GGGRGGSAQ---SKTLFVRGLSEDTTEETLKEAFD--GSVN-ARIVTDRDTGASKGFGFV 545

Query: 512 TMSTIEEADKAIETFNRYDISG 577
             ST E+A  A E     +I G
Sbjct: 546 DFSTAEDAKAAKEAMEDGEIDG 567

---

>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)|
          Length = 142

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 24/54 (44%), Positives = 32/54 (59%)
 Frame = +2

Query: 419 LAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDISGR 580
           L   F   G V  +++I +RE+ +SRGFGFVT ST E    AIE  N  ++ GR
Sbjct: 3   LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGR 56

---

>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 281

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 23/79 (29%), Positives = 40/79 (50%)
 Frame = +2

Query: 344 GYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMST 523
           G  A P     + V  L        L ++F + G +    V+Y++ +G+SRGF FV    
Sbjct: 108 GSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFER 167

Query: 524 IEEADKAIETFNRYDISGR 580
           I+++ +A+E  N  ++ GR
Sbjct: 168 IDDSKEAMERANGMELDGR 186

---

>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1|
          Length = 838

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 23/72 (31%), Positives = 36/72 (50%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           ++++ N+ YD   E   QLF   G +E   V  +  +GQS+GF +V     E A  A   
Sbjct: 302 RLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIE 361

Query: 554 FNRYDISGRLLN 589
            ++    GRLL+
Sbjct: 362 LDKQIFQGRLLH 373



 Score = 33.1 bits (74), Expect = 0.62
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K+ V NLP++   + + +LF   G ++   V    +   +RGF FV      EA+ A++ 
Sbjct: 713 KIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPSEAENAMDQ 771

Query: 554 FNRYDISGRLL 586
                + GR L
Sbjct: 772 LQGVHLLGRRL 782

---

>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
           (Nucleolar phosphoprotein NOPP34-like protein)
          Length = 269

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 24/70 (34%), Positives = 38/70 (54%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YVG+LP  +   +L   F+Q G V    V  ++++G S+G+GFV     E A    ET 
Sbjct: 47  LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106

Query: 557 NRYDISGRLL 586
           N Y +  R++
Sbjct: 107 NNYLMGERII 116

---

>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 282

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 23/79 (29%), Positives = 40/79 (50%)
 Frame = +2

Query: 344 GYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMST 523
           G  A P     + V  L        L ++F + G +    V+Y++ +G+SRGF FV    
Sbjct: 110 GSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFER 169

Query: 524 IEEADKAIETFNRYDISGR 580
           I+++ +A+E  N  ++ GR
Sbjct: 170 IDDSKEAMERANGMELDGR 188

---

>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2|
          Length = 326

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 21/78 (26%), Positives = 41/78 (52%)
 Frame = +2

Query: 353 AEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEE 532
           +E    A ++VG LPY++    +  +F Q G +    ++ ++++G+S+GF F+       
Sbjct: 30  SEYKHSAWIFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRS 89

Query: 533 ADKAIETFNRYDISGRLL 586
              A++ FN   I GR +
Sbjct: 90  TVLAVDNFNGIKIKGRTI 107

---

>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 346

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 21/59 (35%), Positives = 35/59 (59%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           K++VG L  +   E + Q F+Q G VE A +++++ + + RGFGFVT    +  +K  E
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169



 Score = 37.7 bits (86), Expect = 0.025
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           +  K+++G L +    + L   F + G +    V+ +  + +SRGFGFVT +     DK 
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 545 I 547
           +
Sbjct: 79  L 79

---

>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 328

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 21/59 (35%), Positives = 35/59 (59%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           K++VG L  +   E + Q F+Q G VE A +++++ + + RGFGFVT    +  +K  E
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169



 Score = 37.7 bits (86), Expect = 0.025
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           +  K+++G L +    + L   F + G +    V+ +  + +SRGFGFVT +     DK 
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 545 I 547
           +
Sbjct: 79  L 79

---

>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 20/59 (33%), Positives = 36/59 (61%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           K++VG L  +   E + Q F+Q G V+ A +++++ + + RGFGFVT  + +  +K  E
Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 22/77 (28%), Positives = 41/77 (53%)
 Frame = +2

Query: 359 PPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEAD 538
           P +  K+++G L +    E L + F Q G V+   V+ +  + +SRGFGFVT       D
Sbjct: 16  PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75

Query: 539 KAIETFNRYDISGRLLN 589
           K +   +R+++  + ++
Sbjct: 76  KVLAQ-SRHELDSKTID 91

---

>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2|
          Length = 322

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 20/78 (25%), Positives = 42/78 (53%)
 Frame = +2

Query: 353 AEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEE 532
           +E  + A +++G LPY++    +  +F Q G +    ++ ++++G+S+GF F+       
Sbjct: 30  SEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRS 89

Query: 533 ADKAIETFNRYDISGRLL 586
              A++ FN   I GR +
Sbjct: 90  TILAVDNFNGIKIKGRTI 107

---

>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 430

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 20/74 (27%), Positives = 39/74 (52%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           ++  V+VGNLPY V+   + + F   G +    ++ ++ +G  +GFG+V     +    A
Sbjct: 285 DKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLA 344

Query: 545 IETFNRYDISGRLL 586
           ++  N  ++ GR L
Sbjct: 345 LK-LNNSELMGRKL 357

---

>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein|
           11)
          Length = 281

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 28/81 (34%), Positives = 40/81 (49%)
 Frame = +2

Query: 347 YTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTI 526
           + A+   +  V+VGNL   V  E L +LF QAG +    +  +RE G+ + FGFV     
Sbjct: 2   FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHP 60

Query: 527 EEADKAIETFNRYDISGRLLN 589
           E    AI   N   + GR +N
Sbjct: 61  ESVSYAIALLNGIRLYGRPIN 81

---

>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)|
          Length = 348

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 20/68 (29%), Positives = 38/68 (55%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           E  ++  +YV NLP  +  ++L  +F + G++    ++ ++ +G+ RG  FV  +  EEA
Sbjct: 191 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEA 250

Query: 536 DKAIETFN 559
            +AI   N
Sbjct: 251 QEAISALN 258

---

>YAG3_SCHPO (Q09868) Hypothetical RNA-binding protein C12G12.03 in chromosome I|
          Length = 576

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
 Frame = +2

Query: 356 EPPEEA---KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTI 526
           EP EE     + + N+P+ +  E L ++F    +       Y+ ++G  RG  F    + 
Sbjct: 224 EPDEETIPTAIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSP 283

Query: 527 EEADKAIETFNRYDISGRLL 586
           EEA   ++  N Y+I+GR L
Sbjct: 284 EEAKTVVQVLNGYEITGRRL 303

---

>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 24/70 (34%), Positives = 37/70 (52%)
 Frame = +2

Query: 350 TAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIE 529
           TA   +   VYV NL      + L   F + G +  A V+ + E G+S+GFGFV     +
Sbjct: 208 TANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENAD 266

Query: 530 EADKAIETFN 559
           +A +A+E+ N
Sbjct: 267 DAARAVESLN 276



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 26/71 (36%), Positives = 37/71 (52%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +++ NL   +D + L   F   G +   +V  +  SGQS+G+GFV  +  E A KAIE  
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKL 184

Query: 557 NRYDISGRLLN 589
           N     G LLN
Sbjct: 185 N-----GMLLN 190



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 24/78 (30%), Positives = 45/78 (57%)
 Frame = +2

Query: 353 AEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEE 532
           A+  + + +YV NL   +  E+L ++F   G V  ++V+ +  +G S+G GFV  +T EE
Sbjct: 312 ADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEE 370

Query: 533 ADKAIETFNRYDISGRLL 586
           A +A+       +SG+++
Sbjct: 371 ATEAMS-----QLSGKMI 383

---

>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (RA301)
          Length = 288

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 22/79 (27%), Positives = 39/79 (49%)
 Frame = +2

Query: 344 GYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMST 523
           G  A P     + V  L        L ++F + G +    ++Y+++S +SRGF FV    
Sbjct: 109 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 168

Query: 524 IEEADKAIETFNRYDISGR 580
           +++A +A E  N  ++ GR
Sbjct: 169 VDDAKEAKERANGMELDGR 187

---

>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (Silica-induced gene 41 protein) (SIG-41)
          Length = 288

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 22/79 (27%), Positives = 39/79 (49%)
 Frame = +2

Query: 344 GYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMST 523
           G  A P     + V  L        L ++F + G +    ++Y+++S +SRGF FV    
Sbjct: 109 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 168

Query: 524 IEEADKAIETFNRYDISGR 580
           +++A +A E  N  ++ GR
Sbjct: 169 VDDAKEAKERANGMELDGR 187

---

>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog)
          Length = 288

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 22/79 (27%), Positives = 39/79 (49%)
 Frame = +2

Query: 344 GYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMST 523
           G  A P     + V  L        L ++F + G +    ++Y+++S +SRGF FV    
Sbjct: 109 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 168

Query: 524 IEEADKAIETFNRYDISGR 580
           +++A +A E  N  ++ GR
Sbjct: 169 VDDAKEAKERANGMELDGR 187

---

>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 22/75 (29%), Positives = 41/75 (54%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           EE K+++G L +D   + L   F + G V    +  +  +G+SRGFGFV     E  DK 
Sbjct: 95  EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154

Query: 545 IETFNRYDISGRLLN 589
           ++    + ++G++++
Sbjct: 155 MDQ-KEHKLNGKVID 168



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 22/67 (32%), Positives = 35/67 (52%)
 Frame = +2

Query: 350 TAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIE 529
           T EP +  K++VG L  D   E++ + F   G VE  E+  + ++ + RGF F+T    E
Sbjct: 177 TKEPVK--KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234

Query: 530 EADKAIE 550
              K +E
Sbjct: 235 PVKKIME 241

---

>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 22/75 (29%), Positives = 41/75 (54%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           EE K+++G L +D   + L   F + G V    +  +  +G+SRGFGFV     E  DK 
Sbjct: 95  EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154

Query: 545 IETFNRYDISGRLLN 589
           ++    + ++G++++
Sbjct: 155 MDQ-KEHKLNGKVID 168



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 22/67 (32%), Positives = 35/67 (52%)
 Frame = +2

Query: 350 TAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIE 529
           T EP +  K++VG L  D   E++ + F   G VE  E+  + ++ + RGF F+T    E
Sbjct: 177 TKEPVK--KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234

Query: 530 EADKAIE 550
              K +E
Sbjct: 235 PVKKIME 241

---

>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I|
          Length = 219

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 26/73 (35%), Positives = 40/73 (54%)
 Frame = +2

Query: 362 PEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 541
           P   +++VGNL  DV+ E L Q F +   +   +V+ +RE G++RGFGFV+    ++  K
Sbjct: 27  PNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLK 85

Query: 542 AIETFNRYDISGR 580
           A    N   I  R
Sbjct: 86  AWREKNGKYIGSR 98

---

>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1|
          Length = 858

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K+ + NLP++     +  LF   G ++    +  +    +RGFGFV  ST+ EA  A+E 
Sbjct: 720 KILIKNLPFEATKRDIRDLFSSQGQLKSVR-LPKKFDNTTRGFGFVEYSTVREAQSAMEA 778

Query: 554 FNRYDISGRLL 586
                + GR L
Sbjct: 779 LKHTHLLGRHL 789



 Score = 39.7 bits (91), Expect = 0.007
 Identities = 23/64 (35%), Positives = 36/64 (56%)
 Frame = +2

Query: 371 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           +++ V  LP  +   RL + F Q G V   +++  R  G SR FGFV   + +EA +A++
Sbjct: 2   SRLIVRGLPSYLTDARLREHFSQKGAVTDVKLM-RRPDGTSRKFGFVGYRSEQEAQQALD 60

Query: 551 TFNR 562
            FNR
Sbjct: 61  YFNR 64



 Score = 37.7 bits (86), Expect = 0.025
 Identities = 18/75 (24%), Positives = 36/75 (48%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           E  ++++ NLP+    + +   F+  G V+   +  ++++  S+G  FV+ S    A  A
Sbjct: 312 ESGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAA 371

Query: 545 IETFNRYDISGRLLN 589
               +     GRLL+
Sbjct: 372 YRAKDGSTFQGRLLH 386

---

>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein|
          Length = 348

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = +2

Query: 353 AEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSR----GFGFVTMS 520
           A+  ++ +V+VG L        +  LF+  G V    + + R    +R    G  FVT +
Sbjct: 38  AQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFN 97

Query: 521 TIEEADKAIETFNRYDISGR 580
             E+ DKAIET N   +  R
Sbjct: 98  NQEDVDKAIETLNGKTLDDR 117



 Score = 38.1 bits (87), Expect = 0.019
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
 Frame = +2

Query: 332 GGDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFD-------QAGVVEVAEVIYNR---- 478
           GG     A+P     +YV  L   + +E L ++FD       +  V  +   I  R    
Sbjct: 192 GGSGKNKAKPLPPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLR 251

Query: 479 -ESGQSRGFGFVTMSTIEEADKAIETFN 559
            E  + RGFGFV+ +  E+  +AIE  N
Sbjct: 252 GEQRRGRGFGFVSFANAEDQSRAIEEMN 279

---

>SXL_MUSDO (O17310) Sex-lethal homolog|
          Length = 324

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           E  ++  +YV NLP  +  + L ++F + G +    ++ ++ +G+ RG  FV  +  EEA
Sbjct: 183 ESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEA 242

Query: 536 DKAIETFN 559
            +AI   N
Sbjct: 243 QEAISALN 250

---

>SXL_CHRRU (O97018) Sex-lethal homolog|
          Length = 307

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           E  ++  +YV NLP  +  + L ++F + G +    ++ ++ +G+ RG  FV  +  EEA
Sbjct: 166 ESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEA 225

Query: 536 DKAIETFN 559
            +AI   N
Sbjct: 226 QEAISALN 233

---

>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1|
          Length = 346

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = +2

Query: 335 GDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRE--SGQSRGFGF 508
           GDA  + EP    K++VG L  +   + + + + Q G  E+ ++I  R+  + +SRGFGF
Sbjct: 13  GDA--SLEPENLRKIFVGGLTSNTTDDLMREFYSQFG--EITDIIVMRDPTTKRSRGFGF 68

Query: 509 VTMSTIEEADKAIE 550
           VT S   E D A++
Sbjct: 69  VTFSGKTEVDAAMK 82



 Score = 38.9 bits (89), Expect = 0.011
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           ++YV  +  D   + L + F + G V  +E+I ++ + + RGFGFVT    +  D+ +
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172

---

>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1|
          Length = 825

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 21/73 (28%), Positives = 38/73 (52%)
 Frame = +2

Query: 371 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           ++++V NLPYD     L  +F + G +E   V ++  S  S+GF +V     + A +A +
Sbjct: 301 SRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYK 360

Query: 551 TFNRYDISGRLLN 589
             +     GRL++
Sbjct: 361 ELDGKHFQGRLMH 373



 Score = 33.9 bits (76), Expect = 0.36
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K+ + NLP+    + +  LF   G +    V   +    +RGFGF    +  EA+ A++ 
Sbjct: 703 KIIIKNLPFQATKKDVRSLFGAYGQLRSVRVP-KKFDRSARGFGFADFVSAREAENAMDA 761

Query: 554 FNRYDISGRLL 586
                + GR L
Sbjct: 762 LKNTHLLGRRL 772

---

>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 353

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 22/75 (29%), Positives = 41/75 (54%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           EE K+++G L +D   + L   F + G V    +  +  +G+SRGFGFV     E  DK 
Sbjct: 93  EEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 152

Query: 545 IETFNRYDISGRLLN 589
           ++    + ++G++++
Sbjct: 153 MDQ-KEHKLNGKVID 166



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 22/67 (32%), Positives = 35/67 (52%)
 Frame = +2

Query: 350 TAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIE 529
           T EP +  K++VG L  D   E++ + F   G VE  E+  + ++ + RGF F+T    E
Sbjct: 175 TKEPVK--KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 232

Query: 530 EADKAIE 550
              K +E
Sbjct: 233 PVKKIME 239

---

>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 19/59 (32%), Positives = 35/59 (59%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           K++VG L  +   E +   F+Q G V+ A +++++ + + RGFGFVT  + +  +K  E
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 22/77 (28%), Positives = 41/77 (53%)
 Frame = +2

Query: 359 PPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEAD 538
           P +  K+++G L +    E L + F Q G V+   V+ +  + +SRGFGFVT       D
Sbjct: 16  PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75

Query: 539 KAIETFNRYDISGRLLN 589
           K +   +R+++  + ++
Sbjct: 76  KVLAQ-SRHELDSKTID 91

---

>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 19/59 (32%), Positives = 35/59 (59%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           K++VG L  +   E +   F+Q G V+ A +++++ + + RGFGFVT  + +  +K  E
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 22/77 (28%), Positives = 41/77 (53%)
 Frame = +2

Query: 359 PPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEAD 538
           P +  K+++G L +    E L + F Q G V+   V+ +  + +SRGFGFVT       D
Sbjct: 16  PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75

Query: 539 KAIETFNRYDISGRLLN 589
           K +   +R+++  + ++
Sbjct: 76  KVLAQ-SRHELDSKTID 91

---

>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein|
           (Nucleolar protein interacting with the FHA domain of
           pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34)
          Length = 293

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 23/70 (32%), Positives = 35/70 (50%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           VYV +LP  +D  ++   F Q G V    +  ++ +G S+G+ FV   + + A    ET 
Sbjct: 47  VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106

Query: 557 NRYDISGRLL 586
           N Y    RLL
Sbjct: 107 NNYLFGERLL 116

---

>NOP12_CANGA (Q6FUS6) Nucleolar protein 12|
          Length = 396

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 17/67 (25%), Positives = 36/67 (53%)
 Frame = +2

Query: 347 YTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTI 526
           + A   ++  V+VGNL ++ D E L + F   G +E   ++ + ++   +GF +V  + +
Sbjct: 220 HPAPHDKQRSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNEL 279

Query: 527 EEADKAI 547
           +   KA+
Sbjct: 280 QSVSKAL 286

---

>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear|
           ribonucleoprotein 40) (HNRNP 40)
          Length = 344

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 19/71 (26%), Positives = 37/71 (52%)
 Frame = +2

Query: 329 SGGDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGF 508
           S   +  + +  ++ K++VG L ++   + L   F + G +E   V  + ++G+SRGF F
Sbjct: 42  SDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAF 101

Query: 509 VTMSTIEEADK 541
           +  +  E  DK
Sbjct: 102 IVFTNTEAIDK 112



 Score = 37.0 bits (84), Expect = 0.043
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K++VG L  ++  E +   F Q G +   E+ ++++  Q +GF F+T  + +     ++T
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196

---

>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 278

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 20/70 (28%), Positives = 37/70 (52%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +Y+G++P  +   +L + F+Q G V    +  ++++G S+G+ +V     E A    +T 
Sbjct: 43  IYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDEVAKIVADTM 102

Query: 557 NRYDISGRLL 586
           N Y    RLL
Sbjct: 103 NNYLFCERLL 112

---

>DND1_MOUSE (Q6VY05) Dead end protein homolog 1 (RNA-binding motif,|
           single-stranded interacting protein 4)
          Length = 352

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 23/71 (32%), Positives = 37/71 (52%)
 Frame = +2

Query: 359 PPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEAD 538
           PP  ++VY+G LP DV   +L  LF + G +    ++    SG +RGF +   S+   A 
Sbjct: 54  PPSGSEVYIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQ 112

Query: 539 KAIETFNRYDI 571
            AI T + + +
Sbjct: 113 AAIATLHNHQL 123

---

>SXL_DROSU (Q24668) Protein sex-lethal|
          Length = 354

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           E  ++  +YV NLP  +  ++L  +F + G +    ++ ++ +G+ RG  FV  +  EEA
Sbjct: 208 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 267

Query: 536 DKAIETFN 559
            +AI   N
Sbjct: 268 QEAISALN 275

---

>SXL_DROME (P19339) Protein sex-lethal|
          Length = 354

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           E  ++  +YV NLP  +  ++L  +F + G +    ++ ++ +G+ RG  FV  +  EEA
Sbjct: 206 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 265

Query: 536 DKAIETFN 559
            +AI   N
Sbjct: 266 QEAISALN 273

---

>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6|
           (RNA-binding protein srp-1) (CeSRp20)
          Length = 179

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 23/70 (32%), Positives = 36/70 (51%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           +AKVYVG LP D  S+ L ++FD+ G +    V     + +  GF FV    + +A+ A+
Sbjct: 2   DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWV-----ARRPPGFAFVEYDDVRDAEDAV 56

Query: 548 ETFNRYDISG 577
              +   I G
Sbjct: 57  RALDGSRICG 66

---

>FCA_ARATH (O04425) Flowering time control protein FCA|
          Length = 747

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 20/62 (32%), Positives = 36/62 (58%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K++VG++P     E +   F+Q G V    +I ++ +GQ +G  FV  +T ++AD+AI  
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180

Query: 554 FN 559
            +
Sbjct: 181 LH 182



 Score = 35.8 bits (81), Expect = 0.095
 Identities = 24/64 (37%), Positives = 36/64 (56%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           E K++VG+L      + + ++F Q G VE   ++ + E  QSRG GFV  S+ E A  AI
Sbjct: 210 EFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAI 268

Query: 548 ETFN 559
           +  N
Sbjct: 269 DGLN 272

---

>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core|
           protein A1-A) (PEN repeat clone P9)
          Length = 365

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/77 (31%), Positives = 40/77 (51%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           EP    K+++G L Y    E L   F++ G +    V+ +  + +SRGFGF+T S     
Sbjct: 26  EPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMI 85

Query: 536 DKAIETFNRYDISGRLL 586
           D+A +    + I GR++
Sbjct: 86  DEA-QKSRPHKIDGRVV 101



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 18/72 (25%), Positives = 39/72 (54%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K++VG L  D D + +   F   G +    ++ ++E+G+ RGF FV     +  DK +  
Sbjct: 123 KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVV-L 181

Query: 554 FNRYDISGRLLN 589
             ++ ++G++++
Sbjct: 182 QKQHQLNGKMVD 193

---

>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 20/77 (25%), Positives = 40/77 (51%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           E     K+++G L  + + + L  +F + G +    ++ +RE+ +SRGF FVT+ +  +A
Sbjct: 3   EADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADA 62

Query: 536 DKAIETFNRYDISGRLL 586
             A    N   + G+ +
Sbjct: 63  KDAARDMNGKSLDGKAI 79

---

>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1|
          Length = 828

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/72 (33%), Positives = 35/72 (48%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           ++++ NL Y    E   QLF Q G +E   +  N ++GQ +GF  V     E A  A E 
Sbjct: 302 RLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEA 361

Query: 554 FNRYDISGRLLN 589
            +     GRLL+
Sbjct: 362 QDGKIFQGRLLH 373



 Score = 36.2 bits (82), Expect = 0.073
 Identities = 19/73 (26%), Positives = 38/73 (52%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           ++K+ + NLP++   + + +LF   G ++   V   + + +SRGF F    + +EA+ A+
Sbjct: 702 DSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVP-KKFNSESRGFAFAEYVSAKEAEHAM 760

Query: 548 ETFNRYDISGRLL 586
                  + GR L
Sbjct: 761 SALQGTHLLGRRL 773

---

>YRA1_YEAST (Q12159) RNA annealing protein YRA1|
          Length = 226

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLF-DQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           E KV V  LP D+  + + + F  Q G V+   + YN E GQS G   +T    E A +A
Sbjct: 77  EVKVNVEGLPRDIKQDAVREFFASQVGGVQRVLLSYN-ERGQSTGMANITFKNGELARRA 135

Query: 545 IETFNRYDISG 577
           +E FN   I G
Sbjct: 136 VERFNGSPIDG 146

---

>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1|
           protein) (Protein P11)
          Length = 385

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           K++VG L  D D E L + F   G +    ++ ++++G+ RGF F+     +  DK I
Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKII 173



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 24/81 (29%), Positives = 40/81 (49%)
 Frame = +2

Query: 338 DAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTM 517
           D     EP +  K+++G L Y    + L   F++ G +    V+ + ++ +SRGFGF+T 
Sbjct: 13  DGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITY 72

Query: 518 STIEEADKAIETFNRYDISGR 580
           S     D A +    + I GR
Sbjct: 73  SQSYMIDNA-QNARPHKIDGR 92

---

>NUCL_HUMAN (P19338) Nucleolin (Protein C23)|
          Length = 709

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 25/67 (37%), Positives = 37/67 (55%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V  L  D   E L + FD  G V  A ++ +RE+G S+GFGFV  ++ E+A  A E  
Sbjct: 573 LFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629

Query: 557 NRYDISG 577
              +I G
Sbjct: 630 EDGEIDG 636



 Score = 38.5 bits (88), Expect = 0.015
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = +2

Query: 389 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 568
           NLPY V  + L ++F+ A     AE+    + G+S+G  ++   T  +A+K  E     +
Sbjct: 398 NLPYKVTQDELKEVFEDA-----AEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 452

Query: 569 ISGRLLN 589
           I GR ++
Sbjct: 453 IDGRSIS 459

---

>SGN1_YEAST (P40561) RNA-binding protein SGN1|
          Length = 250

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 17/72 (23%), Positives = 40/72 (55%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           +   ++VGN+  DV  E++   F   G ++   ++Y+R +G  +G+G++   +    +KA
Sbjct: 62  DSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKA 121

Query: 545 IETFNRYDISGR 580
           ++  N  ++ G+
Sbjct: 122 LQ-LNGGELKGK 132

---

>NUCL_PONPY (Q5RF26) Nucleolin|
          Length = 711

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 25/67 (37%), Positives = 37/67 (55%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V  L  D   E L + FD  G V  A ++ +RE+G S+GFGFV  ++ E+A  A E  
Sbjct: 575 LFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 631

Query: 557 NRYDISG 577
              +I G
Sbjct: 632 EDGEIDG 638



 Score = 38.5 bits (88), Expect = 0.015
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = +2

Query: 389 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 568
           NLPY V  + L ++F+ A     AE+    + G+S+G  ++   T  +A+K  E     +
Sbjct: 400 NLPYKVTQDELKEVFEDA-----AEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 454

Query: 569 ISGRLLN 589
           I GR ++
Sbjct: 455 IDGRSIS 461

---

>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 22/70 (31%), Positives = 36/70 (51%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YVG L  +VD + L   F   G +   ++  + E+ + RGF FV     E+A  AI+  
Sbjct: 8   LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67

Query: 557 NRYDISGRLL 586
           N  ++ GR +
Sbjct: 68  NESELFGRTI 77

---

>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 22/70 (31%), Positives = 36/70 (51%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YVG L  +VD + L   F   G +   ++  + E+ + RGF FV     E+A  AI+  
Sbjct: 8   LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67

Query: 557 NRYDISGRLL 586
           N  ++ GR +
Sbjct: 68  NESELFGRTI 77

---

>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 276

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 20/70 (28%), Positives = 36/70 (51%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +Y+G++P  +   +L + F Q G V    +  ++++G S+G+ +V     E A    +T 
Sbjct: 43  IYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADTM 102

Query: 557 NRYDISGRLL 586
           N Y    RLL
Sbjct: 103 NNYLFCERLL 112

---

>NUCL_MACFA (Q4R4J7) Nucleolin|
          Length = 710

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 25/67 (37%), Positives = 37/67 (55%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V  L  D   E L + FD  G V  A ++ +RE+G S+GFGFV  ++ E+A  A E  
Sbjct: 574 LFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630

Query: 557 NRYDISG 577
              +I G
Sbjct: 631 EDGEIDG 637



 Score = 38.5 bits (88), Expect = 0.015
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = +2

Query: 389 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 568
           NLPY V  + L ++F+ A     AE+    + G+S+G  ++   T  +A+K  E     +
Sbjct: 399 NLPYKVTQDELKEVFEDA-----AEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 453

Query: 569 ISGRLLN 589
           I GR ++
Sbjct: 454 IDGRSIS 460

---

>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome) (Glycoprotein
           p43)
          Length = 391

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 20/77 (25%), Positives = 39/77 (50%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           E     K+++G L  + + + L  +F + G +    ++ +RE+ +SRGF FVT  +  +A
Sbjct: 3   EADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62

Query: 536 DKAIETFNRYDISGRLL 586
             A    N   + G+ +
Sbjct: 63  KDAARDMNGKSLDGKAI 79

---

>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1|
          Length = 878

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           E  ++++ N+ Y    +   +LF   G +E   +  +  +GQS+GF +V     + A  A
Sbjct: 328 ETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATA 387

Query: 545 IETFNRYDISGRLLN 589
               ++    GRLL+
Sbjct: 388 FVELDKQIFQGRLLH 402



 Score = 34.3 bits (77), Expect = 0.28
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           + K+ V NLP++   + + +LF   G ++   V    +   +RGF FV     +EA+ A+
Sbjct: 751 QGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAENAM 809

Query: 548 ETFNRYDISGRLL 586
           +      + GR L
Sbjct: 810 DQLQGVHLLGRRL 822

---

>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3|
           RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3
           p33) (Translation initiation factor eIF3, p33 subunit)
          Length = 282

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 24/84 (28%), Positives = 44/84 (52%)
 Frame = +2

Query: 335 GDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVT 514
           GD+ +  E  + A + V NL  D   E L  LF + G ++   +  ++E+G+++GF FV+
Sbjct: 190 GDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVS 249

Query: 515 MSTIEEADKAIETFNRYDISGRLL 586
               + A KA +  + Y  +  +L
Sbjct: 250 YYDRDCAIKARDRLDGYGWNNLIL 273

---

>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)|
          Length = 386

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 21/77 (27%), Positives = 40/77 (51%)
 Frame = +2

Query: 350 TAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIE 529
           T    +   V+VG+L  ++ +E +   F   G +  A V+ +  +G+S+G+GFV+     
Sbjct: 99  TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158

Query: 530 EADKAIETFNRYDISGR 580
           +A+ AI+      + GR
Sbjct: 159 DAENAIQQMGGQWLGGR 175



 Score = 29.3 bits (64), Expect = 8.9
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YVGNL  DV    + QLF Q G  +  ++I   ++  +  + FV       A  A+   
Sbjct: 9   LYVGNLSRDVTEALILQLFSQIGPCKNCKMI--MDTAGNDPYCFVEFHEHRHAAAALAAM 66

Query: 557 NRYDISGR 580
           N   I G+
Sbjct: 67  NGRKIMGK 74

---

>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = +2

Query: 335 GDAGYTAEPPEEA-KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFV 511
           GD    ++  E+A K++VG L +D   + L   F + G V    +  +  +G+SRGFGF+
Sbjct: 62  GDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFI 121

Query: 512 TMSTIEEADKAIETFNRYDISGRLLN 589
                   +K ++    + + GR+++
Sbjct: 122 LFKDSSSVEKVLDQ-KEHRLDGRVID 146



 Score = 37.4 bits (85), Expect = 0.033
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           K++VG L  +   E++ + F Q G +E  E+  + +  + RGF F+T    +   K +E
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218

---

>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1|
           (Single-stranded DNA-binding protein MSSP-1) (Suppressor
           of CDC2 with RNA-binding motif 2)
          Length = 406

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           +   +Y+ NLP  +D + L  +    G V ++  I    SG SRG GF  M + E+ +  
Sbjct: 139 DPTNLYISNLPLSMDEQELENMLKPFGQV-ISTRILRDSSGTSRGVGFARMESTEKCEAV 197

Query: 545 IETFN 559
           I  FN
Sbjct: 198 IGHFN 202



 Score = 31.6 bits (70), Expect = 1.8
 Identities = 14/72 (19%), Positives = 32/72 (44%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           +  +Y+  LP     + L +L    G +   + I ++ + + +G+GFV   +   A KA+
Sbjct: 61  KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 120

Query: 548 ETFNRYDISGRL 583
                  +  ++
Sbjct: 121 SALKASGVQAQM 132

---

>BOULE_DROME (Q24207) Protein boule|
          Length = 228

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 19/56 (33%), Positives = 34/56 (60%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 541
           +++VG +  D     L ++F   G V+  ++I +R +G S+G+GFVT  T +EA +
Sbjct: 34  RIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEAQR 88

---

>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1|
           (Single-stranded DNA-binding protein MSSP-1)
          Length = 403

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           +   +Y+ NLP  +D + L  +    G V    V+ +  SG SRG GF  M + E+ +  
Sbjct: 139 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRD-SSGASRGVGFARMESTEKCEAV 197

Query: 545 IETFN 559
           I  FN
Sbjct: 198 IGHFN 202



 Score = 32.3 bits (72), Expect = 1.1
 Identities = 14/72 (19%), Positives = 33/72 (45%)
 Frame = +2

Query: 368 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           +  +Y+  LP +   + L +L    G +   + I ++ + + +G+GFV   +   A KA+
Sbjct: 61  KTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAV 120

Query: 548 ETFNRYDISGRL 583
                  +  ++
Sbjct: 121 SALKANGVQAQM 132

---

>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 960

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 22/64 (34%), Positives = 36/64 (56%)
 Frame = +2

Query: 371 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           +++ V NLP  +  ER  QLF   G +    + + ++ G+ R FGF+   + EEA KA +
Sbjct: 2   SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKAQK 60

Query: 551 TFNR 562
            FN+
Sbjct: 61  HFNK 64



 Score = 38.9 bits (89), Expect = 0.011
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           E  +++V NLPY    E L +LF + G +       +  + + +GF F+T    E A KA
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459

Query: 545 IETFNRYDISGRLLN 589
               +     GR+L+
Sbjct: 460 YSEVDGQVFQGRMLH 474



 Score = 35.0 bits (79), Expect = 0.16
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 371  AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRE-SGQSRGFGFVTMSTIEEADKA 544
            +K+ V N+P+   S  + +LF   G ++   +      +G  RGFGFV   T ++A +A
Sbjct: 832  SKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890

---

>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein|
          Length = 124

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +2

Query: 350 TAEPPEEAKV-YVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTI 526
           T  PPE  +V YV NLP+++ SE +  +F + G +    +  ++    ++G  FV    I
Sbjct: 11  TRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDK---ATKGTAFVVYEDI 67

Query: 527 EEADKAIETFNRYDISGRLL 586
            +A  A++  + ++++ R L
Sbjct: 68  YDAKNAVDHLSGFNVANRYL 87

---

>RB97D_DROME (Q02926) Ribonucleoprotein RB97D|
          Length = 471

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 21/58 (36%), Positives = 33/58 (56%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 547
           K++VG L  + D E L + F Q G V   +++ ++ +G+ RGF FV     +  DKAI
Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181



 Score = 33.1 bits (74), Expect = 0.62
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           K+++G L      E L   + Q G V    V+ +  + +SRGFGF+T +     D+A E
Sbjct: 33  KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91

---

>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)|
           (Transcriptional coactivator Aly/REF) (bZIP-enhancing
           factor BEF)
          Length = 256

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 28/86 (32%), Positives = 43/86 (50%)
 Frame = +2

Query: 332 GGDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFV 511
           GG AG         K+ V NL + V    + +LF + G ++ A V Y+R SG+S G   V
Sbjct: 96  GGGAGVETG----GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADV 150

Query: 512 TMSTIEEADKAIETFNRYDISGRLLN 589
                 +A KA++ +N   + GR +N
Sbjct: 151 HFERKADALKAMKQYNGVPLDGRPMN 176

---

>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export|
           factor-binding protein 1) (REF1-I) (Ally of AML-1 and
           LEF-1) (Aly/REF)
          Length = 254

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 28/86 (32%), Positives = 43/86 (50%)
 Frame = +2

Query: 332 GGDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFV 511
           GG AG         K+ V NL + V    + +LF + G ++ A V Y+R SG+S G   V
Sbjct: 95  GGGAGVETG----GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADV 149

Query: 512 TMSTIEEADKAIETFNRYDISGRLLN 589
                 +A KA++ +N   + GR +N
Sbjct: 150 HFERKADALKAMKQYNGVPLDGRPMN 175

---

>CPSF7_RAT (Q5XI29) Cleavage and polyadenylation specificity factor 7|
          Length = 462

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
 Frame = +2

Query: 347 YTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIY--NRESGQSRGFGFVTMS 520
           Y+      A VYVG+  +    ++L Q+    GV +V E+ +  NR +GQS+G+  V ++
Sbjct: 74  YSGLRSRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVA 133

Query: 521 TIEEADKAIETFNRYDISGRLLN 589
           +     K +E      + G++LN
Sbjct: 134 SENSVHKLLEL-----LPGKVLN 151

---

>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)|
          Length = 685

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 20/70 (28%), Positives = 39/70 (55%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V ++P DV  E+LA  F     ++ A V+ +    +SRGFGFV+ +  ++  +A+   
Sbjct: 28  LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK-RSRGFGFVSFAVEDDTKEALAKA 86

Query: 557 NRYDISGRLL 586
            +   +G +L
Sbjct: 87  RKTKFNGHIL 96



 Score = 38.1 bits (87), Expect = 0.019
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFV 511
           E+  V+V N+PYD   E LA  F + G V+ A  + ++ +G ++G  FV
Sbjct: 288 EDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFV 336



 Score = 35.4 bits (80), Expect = 0.12
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 374 KVYVGNLPYDV-DSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           K+ + N+P+   D  +L ++F + G V V   I  +  G+  GF FVTM  I     A+E
Sbjct: 148 KLIIRNMPWSCRDPVKLKKIFGRYGTV-VEATIPRKRDGKLCGFAFVTMKKISNCRIALE 206

Query: 551 TFNRYDISGR 580
                 I GR
Sbjct: 207 NTKDLKIDGR 216

---

>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (APOBEC-1-binding protein 1) (ABBP-1)
          Length = 331

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 19/75 (25%), Positives = 38/75 (50%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           +  K++VG L +D   + L   F + G V    +  +  +G+SRGFGF+        +K 
Sbjct: 66  DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 125

Query: 545 IETFNRYDISGRLLN 589
           ++    + + GR+++
Sbjct: 126 LDQ-KEHRLDGRVID 139



 Score = 35.0 bits (79), Expect = 0.16
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 374 KVYVGNL-PYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           K++VG L P     E++ + F + G +E  E+  + +  + RGF F+T    E   K +E
Sbjct: 153 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 212

---

>CPSF7_MOUSE (Q8BTV2) Cleavage and polyadenylation specificity factor 7|
          Length = 471

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
 Frame = +2

Query: 347 YTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIY--NRESGQSRGFGFVTMS 520
           Y+      A VYVG+  +    ++L Q+    GV +V E+ +  NR +GQS+G+  V ++
Sbjct: 74  YSGLRSRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVA 133

Query: 521 TIEEADKAIETFNRYDISGRLLN 589
           +     K +E      + G++LN
Sbjct: 134 SENSVHKLLEL-----LPGKVLN 151

---

>DND1_HUMAN (Q8IYX4) Dead end protein homolog 1 (RNA-binding motif,|
           single-stranded interacting protein 4)
          Length = 353

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 22/71 (30%), Positives = 37/71 (52%)
 Frame = +2

Query: 359 PPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEAD 538
           PP  ++V++G LP DV   +L  LF + G +    ++    SG +RGF +   S+   A 
Sbjct: 54  PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQ 112

Query: 539 KAIETFNRYDI 571
            AI T + + +
Sbjct: 113 AAIATLHNHPL 123

---

>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2|
           (Suppressor of CDC2 with RNA-binding motif 3)
          Length = 407

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           +   +Y+ NLP  +D + L  +    G V ++  I    SG SRG GF  M + E+ +  
Sbjct: 133 DPTNLYISNLPLSMDEQELEGMLKPFGQV-ISTRILRDTSGTSRGVGFARMESTEKCEAI 191

Query: 545 IETFN 559
           I  FN
Sbjct: 192 ITHFN 196

---

>NUCL_MOUSE (P09405) Nucleolin (Protein C23)|
          Length = 706

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 24/67 (35%), Positives = 37/67 (55%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V  L  D   E L + F+  G V  A ++ +RE+G S+GFGFV  ++ E+A  A E  
Sbjct: 570 LFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 626

Query: 557 NRYDISG 577
              +I G
Sbjct: 627 EDGEIDG 633

---

>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark|
           homolog)
          Length = 359

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K+++GNLP +   + +  LF+Q G V   ++I N        +GFV +     A+ AI  
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54

Query: 554 FNRYDISGRLLN 589
            + Y + G  +N
Sbjct: 55  LHHYKLHGVNIN 66

---

>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 359

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K+++GNLP +   + +  LF+Q G V   ++I N        +GFV +     A+ AI  
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54

Query: 554 FNRYDISGRLLN 589
            + Y + G  +N
Sbjct: 55  LHHYKLHGVNIN 66

---

>RNP24_SCHPO (Q09100) RNA-binding protein rnp24|
          Length = 369

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           ++VGNL ++     L + F Q G +    ++   ++G+ +GFGFV    I+   KA+E
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME 287

---

>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)|
           (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15
           (p15-TIA-1)]
          Length = 386

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V+VG+L   + +E +   F   G +  A V+ +  +G+S+G+GFV+     +A+ AI+  
Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167

Query: 557 NRYDISGR 580
               + GR
Sbjct: 168 GGQWLGGR 175



 Score = 29.3 bits (64), Expect = 8.9
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YVGNL  DV    + QLF Q G  +  ++I   ++  +  + FV       A  A+   
Sbjct: 9   LYVGNLSRDVTEALILQLFSQIGPCKNCKMI--MDTAGNDPYCFVEFHEHRHAAAALAAM 66

Query: 557 NRYDISGR 580
           N   I G+
Sbjct: 67  NGRKIMGK 74

---

>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (mLark)
          Length = 361

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K+++GNLP +   + +  LF+Q G V   ++I N        +GFV +     A+ AI  
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54

Query: 554 FNRYDISGRLLN 589
            + Y + G  +N
Sbjct: 55  LHHYKLHGVNIN 66

---

>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP|
           core protein C) (Fragment)
          Length = 158

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 22/67 (32%), Positives = 35/67 (52%)
 Frame = +2

Query: 350 TAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIE 529
           T EP +  K++VG L  D   E++ + F   G VE  E+  + ++ + RGF F+T    E
Sbjct: 29  TKEPVK--KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 86

Query: 530 EADKAIE 550
              K +E
Sbjct: 87  PVKKIME 93

---

>CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity factor 6|
          Length = 545

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIY--NRESGQSRGFGFVTMSTIEEADKAIE 550
           +Y+GNL +    E L       G+ +V E+ +  NR +GQS+GF  V + +   + K ++
Sbjct: 83  LYIGNLTWWTTDEDLTDAIRSIGINDVLEIKFFENRANGQSKGFALVCVGSDSSSRKLMD 142

Query: 551 TFNRYDISGR 580
             ++ ++ G+
Sbjct: 143 LLSKRELHGQ 152

---

>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2|
          Length = 383

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           +   +Y+ NLP  +D + L  +    G V ++  I    SG SRG GF  M + E+ +  
Sbjct: 135 DPTNLYISNLPLSMDEQELEGMLKPFGQV-ISTRILRDTSGASRGVGFARMESTEKCEAI 193

Query: 545 IETFN 559
           I  FN
Sbjct: 194 ITHFN 198



 Score = 30.8 bits (68), Expect = 3.1
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = +2

Query: 329 SGGDAGYTAEPPEEAK--VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGF 502
           SGG  G +    + +K  +Y+  L      + L +L    G +   + I ++ + + +G+
Sbjct: 42  SGGGGGGSGGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGY 101

Query: 503 GFVTMSTIEEADKAIETFNRYDISGRL 583
           GFV   +   A KA+       +  ++
Sbjct: 102 GFVDFDSPSSAQKAVTALKASGVQAQM 128

---

>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a)
          Length = 362

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K+++GNLP +   + +  LF+Q G V   ++I N        +GFV +     A+ AI  
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54

Query: 554 FNRYDISGRLLN 589
            + Y + G  +N
Sbjct: 55  LHHYKLHGVNIN 66

---

>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 471

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/74 (28%), Positives = 42/74 (56%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           + ++++VGNLP D+  E + +LF++ G  +  EV  +++    +GFGF+ + T   A+ A
Sbjct: 72  QRSRLFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKD----KGFGFIRLETRTLAEIA 125

Query: 545 IETFNRYDISGRLL 586
               +   + G+ L
Sbjct: 126 KVELDNMPLRGKQL 139

---

>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO|
           protein) (54 kDa nuclear RNA- and DNA-binding protein)
           (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55)
           (DNA-binding p52/p100 complex, 52 kDa subunit)
          Length = 471

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/74 (28%), Positives = 42/74 (56%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           + ++++VGNLP D+  E + +LF++ G  +  EV  +++    +GFGF+ + T   A+ A
Sbjct: 72  QRSRLFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKD----KGFGFIRLETRTLAEIA 125

Query: 545 IETFNRYDISGRLL 586
               +   + G+ L
Sbjct: 126 KVELDNMPLRGKQL 139

---

>CPSF7_HUMAN (Q8N684) Cleavage and polyadenylation specificity factor 7|
           (Cleavage and polyadenylation specificity factor 59 kDa
           subunit) (CPSF 59 kDa subunit) (Pre-mRNA cleavage factor
           Im 59-kDa subunit)
          Length = 471

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
 Frame = +2

Query: 347 YTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIY--NRESGQSRGFGFVTMS 520
           Y+      A VYVG+  +    ++L Q+    GV +V E+ +  NR +GQS+G+  V ++
Sbjct: 74  YSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVA 133

Query: 521 TIEEADKAIETFNRYDISGRLLN 589
           +     K +E      + G++LN
Sbjct: 134 SENSVHKLLEL-----LPGKVLN 151

---

>CPSF6_XENLA (Q6DDW4) Cleavage and polyadenylation specificity factor 6|
          Length = 548

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIY--NRESGQSRGFGFVTMSTIEEADKAIE 550
           +Y+GNL +    E L       GV ++ E+ +  NR +GQS+GF  + +S+   + K ++
Sbjct: 83  LYIGNLTWWTTDEDLTDAVHSLGVNDILEIKFFENRANGQSKGFALICVSSESSSKKLMD 142

Query: 551 TFNRYDISGR 580
              + ++ G+
Sbjct: 143 LLPKREMHGQ 152

---

>CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity factor 6|
          Length = 551

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
 Frame = +2

Query: 332 GGDAGYTAEPP-------EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIY--NRES 484
           G D G  A P        +   +Y+GNL +    E L +     GV ++ E+ +  NR +
Sbjct: 61  GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN 120

Query: 485 GQSRGFGFVTMSTIEEADKAIETFNRYDISGR 580
           GQS+GF  V + +   + K ++   + ++ G+
Sbjct: 121 GQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 152

---

>CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity factor 6|
           (Cleavage and polyadenylation specificity factor 68 kDa
           subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor
           Im 68-kDa subunit) (Protein HPBRII-4/7)
          Length = 551

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
 Frame = +2

Query: 332 GGDAGYTAEPP-------EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIY--NRES 484
           G D G  A P        +   +Y+GNL +    E L +     GV ++ E+ +  NR +
Sbjct: 61  GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN 120

Query: 485 GQSRGFGFVTMSTIEEADKAIETFNRYDISGR 580
           GQS+GF  V + +   + K ++   + ++ G+
Sbjct: 121 GQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 152

---

>CPSF6_CHICK (Q5ZL34) Cleavage and polyadenylation specificity factor 6|
          Length = 551

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
 Frame = +2

Query: 332 GGDAGYTAEPP-------EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIY--NRES 484
           G D G  A P        +   +Y+GNL +    E L +     GV ++ E+ +  NR +
Sbjct: 61  GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN 120

Query: 485 GQSRGFGFVTMSTIEEADKAIETFNRYDISGR 580
           GQS+GF  V + +   + K ++   + ++ G+
Sbjct: 121 GQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 152

---

>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 24/67 (35%), Positives = 37/67 (55%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V  L  D   E L + F+  G V  A ++ +RE+G S+GFGFV  ++ E+A  A E  
Sbjct: 573 LFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629

Query: 557 NRYDISG 577
              +I G
Sbjct: 630 EDGEIDG 636

---

>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 473

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/74 (28%), Positives = 42/74 (56%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           + ++++VGNLP D+  E + +LF++ G  +  EV  +++    +GFGF+ + T   A+ A
Sbjct: 74  QRSRLFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKD----KGFGFIRLETRTLAEIA 127

Query: 545 IETFNRYDISGRLL 586
               +   + G+ L
Sbjct: 128 KVELDNMPLRGKQL 141

---

>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
           (Zinc-responsive protein ZD7)
          Length = 357

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K+++GNLP +   + +  LF+Q G V   ++I N        +GFV +     A+ AI  
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54

Query: 554 FNRYDISGRLLN 589
            + Y + G  +N
Sbjct: 55  LHHYKLHGVNIN 66

---

>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 357

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K+++GNLP +   + +  LF+Q G V   ++I N        +GFV +     A+ AI  
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54

Query: 554 FNRYDISGRLLN 589
            + Y + G  +N
Sbjct: 55  LHHYKLHGVNIN 66

---

>DND1_BRARE (Q7T1H5) Dead end protein 1|
          Length = 411

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +2

Query: 359 PPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEAD 538
           P    +V++  +P DV  +RL  LF   G +    ++ N  SGQ+RGF +        A 
Sbjct: 56  PGSGCEVFISQIPNDVYEDRLIPLFQSIGTIYEFRLMMNF-SGQTRGFAYAKYGDPLTAS 114

Query: 539 KAIETFNRY 565
            A+ T ++Y
Sbjct: 115 AAVTTLHQY 123

---

>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 476

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/74 (28%), Positives = 42/74 (56%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           + ++++VGNLP D+  E + +LF++ G  +  EV  +++    +GFGF+ + T   A+ A
Sbjct: 77  QRSRLFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKD----KGFGFIRLETRTLAEIA 130

Query: 545 IETFNRYDISGRLL 586
               +   + G+ L
Sbjct: 131 KVELDNMPLRGKQL 144

---

>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (hLark)
          Length = 364

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K+++GNLP +   + +  LF+Q G V   ++I N        +GFV +     A+ AI  
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54

Query: 554 FNRYDISGRLLN 589
            + Y + G  +N
Sbjct: 55  LHHYKLHGVNIN 66

---

>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 24/67 (35%), Positives = 37/67 (55%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V  L  D   E L + F+  G V  A ++ +RE+G S+GFGFV  ++ E+A  A E  
Sbjct: 576 LFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 632

Query: 557 NRYDISG 577
              +I G
Sbjct: 633 EDGEIDG 639

---

>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 23/67 (34%), Positives = 37/67 (55%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           ++V  L  D   E L + F+  G +  A ++ +R++G S+GFGFV  S+ E+A  A E  
Sbjct: 555 LFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611

Query: 557 NRYDISG 577
              +I G
Sbjct: 612 EDGEIDG 618

---

>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 392

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V+VG+L  ++ +E +   F   G +  A V+ +  +G+S+G+GFV+     +A+ AI   
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175

Query: 557 NRYDISGR 580
               + GR
Sbjct: 176 GGQWLGGR 183

---

>NOP12_YEAST (Q08208) Nucleolar protein 12|
          Length = 459

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 16/67 (23%), Positives = 36/67 (53%)
 Frame = +2

Query: 347 YTAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTI 526
           + A   ++  ++VGNL ++   E L + F+  G +E   +I + ++   +GF +V    +
Sbjct: 271 HPAPHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDL 330

Query: 527 EEADKAI 547
           +  +KA+
Sbjct: 331 QSVNKAL 337

---

>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 19/77 (24%), Positives = 38/77 (49%)
 Frame = +2

Query: 356 EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 535
           E     K+++G L  + + + L  +F + G +    ++ +RE+ +SRGF FVT  +  +A
Sbjct: 3   EADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADA 62

Query: 536 DKAIETFNRYDISGRLL 586
                  N   + G+ +
Sbjct: 63  KDVARDMNGKSLDGKAI 79

---

>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 375

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           V+VG+L  ++ +E +   F   G +  A V+ +  +G+S+G+GFV+     +A+ AI   
Sbjct: 99  VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158

Query: 557 NRYDISGR 580
               + GR
Sbjct: 159 GGQWLGGR 166



 Score = 30.4 bits (67), Expect = 4.0
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +2

Query: 377 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF 556
           +YVGNL  DV    + QLF Q G  +  ++I    S     + FV      +A  A+   
Sbjct: 11  LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAM 68

Query: 557 NRYDISGR 580
           N   I G+
Sbjct: 69  NGRKILGK 76

---

>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1|
          Length = 887

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           +  ++++ N+ Y    E   +LF   G +E   V  +  +GQS+GF +V     + A  A
Sbjct: 343 QTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNA 402

Query: 545 IETFNRYDISGRLLN 589
               ++    GRLL+
Sbjct: 403 YVELDKQIFQGRLLH 417



 Score = 35.0 bits (79), Expect = 0.16
 Identities = 21/79 (26%), Positives = 39/79 (49%)
 Frame = +2

Query: 350 TAEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIE 529
           T    +  K+ V NLP++   + + +LF+  G ++   V    +   +RGF FV     +
Sbjct: 756 TKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPK 814

Query: 530 EADKAIETFNRYDISGRLL 586
           EA+ A++  +   + GR L
Sbjct: 815 EAENAMDQLHGVHLLGRRL 833

---

>RAVR2_HUMAN (Q9HCJ3) Protein raver-2|
          Length = 691

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 23/75 (30%), Positives = 38/75 (50%)
 Frame = +2

Query: 362 PEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 541
           P +A + + N+P    SE   +L    G +E   ++Y+  +G S+G+GFV     + A K
Sbjct: 139 PTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAK 198

Query: 542 AIETFNRYDISGRLL 586
           A     R ++ GR L
Sbjct: 199 A-----RLELLGRQL 208

---

>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 21/64 (32%), Positives = 35/64 (54%)
 Frame = +2

Query: 371 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 550
           +++ V NLP  +  ER  QLF   G +    + + ++ G+ R FGF+   + EEA  A+ 
Sbjct: 2   SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQAALN 60

Query: 551 TFNR 562
            F+R
Sbjct: 61  HFHR 64



 Score = 35.4 bits (80), Expect = 0.12
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 371  AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRE-SGQSRGFGFVTMSTIEEADKA 544
            +K+ V N+P+  +   + +LF   G ++   +      +G  RGFGFV   T ++A KA
Sbjct: 824  SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA 882



 Score = 34.3 bits (77), Expect = 0.28
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = +2

Query: 365 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 544
           +  +++V NL Y    E L +LF   G +       +  + + +GF FVT    E A KA
Sbjct: 398 DSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA 457

Query: 545 IETFNRYDISGRLLN 589
               +     GR+L+
Sbjct: 458 YAEVDGQVFQGRMLH 472

---

>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1|
          Length = 827

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 26/71 (36%), Positives = 36/71 (50%)
 Frame = +2

Query: 374 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 553
           K+ V NLP++V  + +  LF   G + VA  I  + +  SRGF F   ST +EA  A  +
Sbjct: 705 KLVVKNLPFEVTKKEVRTLFSAYGKL-VALRIPKKFNQSSRGFAFAEFSTAKEALNAFNS 763

Query: 554 FNRYDISGRLL 586
                I GR L
Sbjct: 764 LKDTHILGRRL 774


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,912,435
Number of Sequences: 219361
Number of extensions: 765076
Number of successful extensions: 3696
Number of sequences better than 10.0: 399
Number of HSP's better than 10.0 without gapping: 3291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3635
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

---