ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart22b11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC166709.9| Mus musculus chromosome 1, clone RP23-406B10, complete sequence Length = 175924 Score = 42.1 bits (21), Expect = 0.047 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 ttcatttaaggacaagaattt 31 ||||||||||||||||||||| Sbjct: 57516 ttcatttaaggacaagaattt 57536
>gb|AC163274.5| Mus musculus chromosome 1, clone RP23-202P19, complete sequence Length = 208546 Score = 42.1 bits (21), Expect = 0.047 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 ttcatttaaggacaagaattt 31 ||||||||||||||||||||| Sbjct: 195613 ttcatttaaggacaagaattt 195633
>gb|AC008613.7| Homo sapiens chromosome 5 clone CTB-136L17, complete sequence Length = 116407 Score = 42.1 bits (21), Expect = 0.047 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 actgcatttcatttaaggaca 24 ||||||||||||||||||||| Sbjct: 106643 actgcatttcatttaaggaca 106623
>gb|AC016556.8| Homo sapiens chromosome 5 clone CTC-369A16, complete sequence Length = 136791 Score = 42.1 bits (21), Expect = 0.047 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 actgcatttcatttaaggaca 24 ||||||||||||||||||||| Sbjct: 105253 actgcatttcatttaaggaca 105233
>gb|AC024121.5| Homo sapiens chromosome 5 clone CTB-2J5, complete sequence Length = 132728 Score = 42.1 bits (21), Expect = 0.047 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 actgcatttcatttaaggaca 24 ||||||||||||||||||||| Sbjct: 60201 actgcatttcatttaaggaca 60221
>gb|AC022449.5| Homo sapiens chromosome 5 clone RP11-93O7, complete sequence Length = 161121 Score = 42.1 bits (21), Expect = 0.047 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 actgcatttcatttaaggaca 24 ||||||||||||||||||||| Sbjct: 148185 actgcatttcatttaaggaca 148205
>gb|AC008527.5|AC008527 Homo sapiens chromosome 5 clone CTC-471D10, complete sequence Length = 132063 Score = 42.1 bits (21), Expect = 0.047 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 actgcatttcatttaaggaca 24 ||||||||||||||||||||| Sbjct: 34877 actgcatttcatttaaggaca 34897
>ref|NM_001015132.1| Drosophila melanogaster CG17436-PA.3 (CG17436), mRNA Length = 2305 Score = 40.1 bits (20), Expect = 0.18 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 catttcatttaaggacaaga 27 |||||||||||||||||||| Sbjct: 1653 catttcatttaaggacaaga 1634
>gb|AF267746.1|AF267745S2 Drosophila melanogaster rad21 mitotic cohesin (drad21) gene, exons 3 through 8 and complete cds Length = 19950 Score = 40.1 bits (20), Expect = 0.18 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 catttcatttaaggacaaga 27 |||||||||||||||||||| Sbjct: 7661 catttcatttaaggacaaga 7642
>gb|AF186473.1|AF186473 Drosophila melanogaster mitotic cohesin SCC1 (scc1) mRNA, complete cds Length = 2303 Score = 40.1 bits (20), Expect = 0.18 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 catttcatttaaggacaaga 27 |||||||||||||||||||| Sbjct: 1633 catttcatttaaggacaaga 1614
>gb|AF132146.1|AF132146 Drosophila melanogaster clone LD09474 DNA repair protein Rad21 (rad21) mRNA, complete cds Length = 2264 Score = 40.1 bits (20), Expect = 0.18 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 catttcatttaaggacaaga 27 |||||||||||||||||||| Sbjct: 1594 catttcatttaaggacaaga 1575
>gb|AF109926.1|AF109926 Drosophila melanogaster rad21 mitotic cohesin (drad21) mRNA, complete cds Length = 2267 Score = 40.1 bits (20), Expect = 0.18 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 catttcatttaaggacaaga 27 |||||||||||||||||||| Sbjct: 1597 catttcatttaaggacaaga 1578
>gb|CP000191.1| Drosophila melanogaster genomic scaffold 211000022280172 Length = 132906 Score = 40.1 bits (20), Expect = 0.18 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 catttcatttaaggacaaga 27 |||||||||||||||||||| Sbjct: 72906 catttcatttaaggacaaga 72887
>gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1045_C06, complete sequence Length = 143130 Score = 38.2 bits (19), Expect = 0.73 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 actgcatttcatttaagga 22 ||||||||||||||||||| Sbjct: 136808 actgcatttcatttaagga 136790
>gb|AC136999.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009L15, complete sequence Length = 137570 Score = 38.2 bits (19), Expect = 0.73 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 actgcatttcatttaagga 22 ||||||||||||||||||| Sbjct: 55359 actgcatttcatttaagga 55341
>gb|AC126270.4| Mus musculus BAC clone RP23-233A12 from chromosome 10, complete sequence Length = 208709 Score = 38.2 bits (19), Expect = 0.73 Identities = 22/23 (95%) Strand = Plus / Minus Query: 6 tgcatttcatttaaggacaagaa 28 |||||||| |||||||||||||| Sbjct: 143173 tgcatttcctttaaggacaagaa 143151
>gb|AC130307.3| Homo sapiens chromosome 11, clone RP11-15D10, complete sequence Length = 159817 Score = 38.2 bits (19), Expect = 0.73 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 ctgcatttcatttaaggac 23 ||||||||||||||||||| Sbjct: 41183 ctgcatttcatttaaggac 41201
>gb|AC153582.10| Mus musculus 6 BAC RP23-432M19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 204239 Score = 38.2 bits (19), Expect = 0.73 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 tcatttaaggacaagaatt 30 ||||||||||||||||||| Sbjct: 17710 tcatttaaggacaagaatt 17692
>gb|AC141420.11| Pan troglodytes clone rp43-149n17, complete sequence Length = 167816 Score = 38.2 bits (19), Expect = 0.73 Identities = 22/23 (95%) Strand = Plus / Minus Query: 11 ttcatttaaggacaagaatttac 33 |||||||||||||||| |||||| Sbjct: 136694 ttcatttaaggacaagtatttac 136672
>gb|AC138065.25| Pan troglodytes clone rp43-11g4, complete sequence Length = 173247 Score = 38.2 bits (19), Expect = 0.73 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 ttcatttaaggacaagaatttac 33 |||||||||||||||| |||||| Sbjct: 134010 ttcatttaaggacaagtatttac 134032
>gb|AC090858.6| Homo sapiens chromosome 11, clone RP11-676E14, complete sequence Length = 168906 Score = 38.2 bits (19), Expect = 0.73 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 ctgcatttcatttaaggac 23 ||||||||||||||||||| Sbjct: 44157 ctgcatttcatttaaggac 44139
>gb|AC153579.10| Mus musculus 6 BAC RP23-21F2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 228481 Score = 38.2 bits (19), Expect = 0.73 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 tcatttaaggacaagaatt 30 ||||||||||||||||||| Sbjct: 37187 tcatttaaggacaagaatt 37205
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 0.73 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 actgcatttcatttaagga 22 ||||||||||||||||||| Sbjct: 16924322 actgcatttcatttaagga 16924304
>ref|XM_630631.1| Dictyostelium discoideum hypothetical protein (DDB0188872), partial mRNA Length = 2700 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 aaactgcatttcatttaa 19 |||||||||||||||||| Sbjct: 1592 aaactgcatttcatttaa 1609
>gb|AC121152.15| Mus musculus chromosome 10, clone RP24-344A4, complete sequence Length = 147999 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 14 atttaaggacaagaattt 31 |||||||||||||||||| Sbjct: 97625 atttaaggacaagaattt 97642
>gb|AC146460.3| Pan troglodytes BAC clone CH251-182B16 from X, complete sequence Length = 172064 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 aaaactgcatttcattta 18 |||||||||||||||||| Sbjct: 67002 aaaactgcatttcattta 67019
>gb|AC130827.3| Mus musculus BAC clone RP23-405I7 from chromosome 13, complete sequence Length = 212140 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 4 actgcatttcatttaagg 21 |||||||||||||||||| Sbjct: 139990 actgcatttcatttaagg 139973
>gb|AC115940.11| Mus musculus chromosome 5, clone RP24-553D12, complete sequence Length = 189685 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 11 ttcatttaaggacaagaa 28 |||||||||||||||||| Sbjct: 18571 ttcatttaaggacaagaa 18554
>emb|CR848707.6| Zebrafish DNA sequence from clone CH211-276P5 in linkage group 11, complete sequence Length = 158349 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 aaactgcatttcatttaa 19 |||||||||||||||||| Sbjct: 127534 aaactgcatttcatttaa 127517
>gb|AC142325.5| Pan troglodytes BAC clone RP43-43D18 from Y, complete sequence Length = 199863 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 26422 catttcctttcaggacaagaatttac 26447
>gb|AC127275.4| Mus musculus BAC clone RP24-207I8 from chromosome 5, complete sequence Length = 180919 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 11 ttcatttaaggacaagaa 28 |||||||||||||||||| Sbjct: 93505 ttcatttaaggacaagaa 93488
>gb|AC122836.4| Mus musculus BAC clone RP23-188B13 from 7, complete sequence Length = 222390 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 15 tttaaggacaagaattta 32 |||||||||||||||||| Sbjct: 197279 tttaaggacaagaattta 197296
>gb|AC115119.5| Mus musculus BAC clone RP23-87M19 from 18, complete sequence Length = 174491 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 aaactgcatttcatttaa 19 |||||||||||||||||| Sbjct: 34201 aaactgcatttcatttaa 34184
>ref|XM_645113.1| Entamoeba histolytica HM-1:IMSS glutamine cyclotransferase, putative (237.t00012) partial mRNA Length = 762 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 aaactgcatttcatttaa 19 |||||||||||||||||| Sbjct: 552 aaactgcatttcatttaa 535
>gb|AC006459.3| Homo sapiens BAC clone GS1-281N8 from 7, complete sequence Length = 186981 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 aaaactgcatttcattta 18 |||||||||||||||||| Sbjct: 58656 aaaactgcatttcattta 58673
>gb|AC166260.7| Mus musculus 10 BAC RP23-330F17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 175641 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 14 atttaaggacaagaattt 31 |||||||||||||||||| Sbjct: 128035 atttaaggacaagaattt 128052
>emb|BX120009.10| Human DNA sequence from clone DASS-227B13 on chromosome 6, complete sequence Length = 64380 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 51255 catttccttttaggacaagaatttac 51280
>emb|AL845446.7| Human DNA sequence from clone DAQB-79P13 on chromosome 6 Contains the 3' end of the HLA-DPB1 gene for the major histocompatibility complex, class II, DP beta 1, the HLA-DPA2 pseudogene for major histocompatibility complex, class II, DP alpha 2, the COL11A2P pseudogene for collagen, type X1, alpha 2, the HLA-DPB2 pseudogene for the major histocompatibility complex, class II, DP beta 2, the DAQB-79P13.6 gene for a novel transcript that shares 2 exons with HLA-DPB2, the HLA-DPA3 pseudogene for the major histocompatibility complex, class II, DP alpha 2, HCG24 gene for HLA complex group 24, the 3' end of the COL11A2 gene for collagen type XI alpha 2 and 1 CpG island, complete sequence Length = 93842 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 39589 catttccttttaggacaagaatttac 39614
>emb|AL662824.9| Human DNA sequence from clone XXbac-22I16 on chromosome 6 contains the HLA-DPA1 gene for major histocompatibility complex, class II, DP alpha 1, the HLA-DPB1 gene for major histocompatibility complex, class II, DP beta 1, a ribosomal protein L32 (RPL32) pseudogene, the HLA-DPA2 pseudogene for major histocompatibility complex, class II, DP alpha 2, a pseudogene similar to part of collagens, a novel protein similar to major histocompatibility complex, class II, DP beta 2 (pseudogene), a major histocompatibility complex, class II, DP beta 1 pseudogene, two putative novel transcripts, the COL11A2 gene for collagen, type XI, alpha 2, the RXRB gene for retinoid X receptor, beta, the HKE4 gene for HLA-class II region expressed gene KE4, the 5' end of the HSD17B8 gene for hydroxysteroid (17-beta) dehydrogenase 8 and four CpG islands, complete sequence Length = 187964 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 100915 catttccttttaggacaagaatttac 100940
>emb|AL645940.4| Human DNA sequence from clone XXbac-157A10 on chromosome 6 contains the 3' end of the gene for a novel protein similar to major histocompatibility complex, class II, DP beta 2 pseudogene, a major histocompatibility complex, class II, DP beta 1 pseudogene, two putative novel transcripts, the COL11A2 gene for collagen, type XI, alpha 2, the RXRB gene for retinoid X receptor, beta, the HKE4 gene for HLA-class II region expressed gene KE4, the FABGL gene for hydroxysteroid (17-beta) dehydrogenase 8, the RING1 gene for ring finger protein 1, a zinger finger protein pseudogene, a HIV TAT specific factor 1 (HTATSF1) pseudogene, a novel transcript, the SACM2L gene for SAC2 suppressor of actin mutations 2-like (yeast), the 5' end of the RPS18 gene for ribosomal protein S18 and six CpG islands, complete sequence Length = 158033 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 4057 catttccttttaggacaagaatttac 4082
>emb|AL451080.11| Human DNA sequence from clone RP11-323B13 on chromosome 6 Contains the 3' end of a novel gene (FLJ20342), complete sequence Length = 56725 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 6 tgcatttcatttaaggac 23 |||||||||||||||||| Sbjct: 28170 tgcatttcatttaaggac 28153
>emb|AL441884.5| Human DNA sequence from clone RP11-19A22 on chromosome 9 Contains part of a variant of the PTPRD gene for protein tyrosine phosphatase, receptor type, D (HPTP, PTPD, HPTPD), complete sequence Length = 137783 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Minus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 127774 catttccttttaggacaagaatttac 127749
>emb|AL450343.4| Human DNA sequence from clone RP11-152M12 on chromosome 6, complete sequence Length = 22205 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 aaactgcatttcatttaa 19 |||||||||||||||||| Sbjct: 15895 aaactgcatttcatttaa 15878
>emb|AL161723.12| Human DNA sequence from clone RP13-172P13 on chromosome X, complete sequence Length = 155725 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 18905 catttccttttaggacaagaatttac 18930
>emb|AL109659.20|HSJ1024N4 Human DNA sequence from clone RP5-1024N4 on chromosome 1p32.1-33 Contains two novel genes, a novel pseudogene, a novel gene (LOC200010), a novel gene similar to connexin and one CpG island, complete sequence Length = 181678 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 16 ttaaggacaagaatttac 33 |||||||||||||||||| Sbjct: 95176 ttaaggacaagaatttac 95159
>emb|AL031228.1|HS1033B10 Human DNA sequence from clone RP5-1033B10 on chromosome 6p21.2-21.31 Contains the 3' end of the C6ORF11 gene for chromosome 6 open reading frame 11 (BING4), the B3GALT4 gene for UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase polypeptide 4 (GalT4,Gal-T2,beta3GALT4,beta3Gal-T4), the RPS18 gene for 40S ribosomal protein S18 (KE3,HKE3,KE-3), the SACM2L gene for SAC2 suppressor of actin mutations 2-like (yeast)(ARE1,SAC2,ARE-1,RP5-1033B10), a pseudogene similar to part of HTATSF1 (HIV TAT specific factor 1), the RING1 gene for ring finger protein 1 (RNF1), the HSD17B8 gene for hydroxysteroid (17-beta) dehydrogenase 8 (KE6,FABG,HKE6,FABGL,RING2,H2-KE6,D6S2245E), the HKE4 gene for HLA class II region protein KE4 (KE4,RING5,H2-KE4,D6S115E,D6S2244E), the RXRB gene for retinoid X receptor beta (NR2B2,RCoR-1,H-2RIIBP), the COL11A2 gene for collagen type XI alpha 2 (HKE5,PARP,STL3,DFNA13), an HLA class II histocompatability antigen D or S beta pseudogene,the gene for a novel protein similar to major histocompatibility complex class II DP beta 1 precursor, three novel genes and seven CpG islands, complete sequence Length = 175737 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Minus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 167208 catttccttttaggacaagaatttac 167183
>emb|AL662817.11| Mouse DNA sequence from clone RP23-455B19 on chromosome 11 Contains the gene for a novel protein similar to rat galactose binding soluble lectin 5 Lgals5, a novel gene, a ribosomal protein L12 (Rpl12) pseudogene and a CpG island, complete sequence Length = 145667 Score = 36.2 bits (18), Expect = 2.9 Identities = 21/22 (95%) Strand = Plus / Plus Query: 2 aaactgcatttcatttaaggac 23 ||||| |||||||||||||||| Sbjct: 103764 aaactccatttcatttaaggac 103785
>gb|AC018653.29| Homo sapiens 12 BAC RP11-273B20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172155 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 catttcatttaaggacaagaatttac 33 ||||| |||| ||||||||||||||| Sbjct: 92897 cattttattttaggacaagaatttac 92922
>gb|AC102076.9| Mus musculus chromosome 7, clone RP23-401P12, complete sequence Length = 199219 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 15 tttaaggacaagaattta 32 |||||||||||||||||| Sbjct: 91888 tttaaggacaagaattta 91871
>emb|BX649372.5| Zebrafish DNA sequence from clone DKEY-52K20 in linkage group 2, complete sequence Length = 249584 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 aaaactgcatttcattta 18 |||||||||||||||||| Sbjct: 48040 aaaactgcatttcattta 48057
>emb|CR847849.5| Human DNA sequence from clone DAMA-245O6 on chromosome 6, complete sequence Length = 88163 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 63442 catttccttttaggacaagaatttac 63467
>dbj|BS000620.1| Pan troglodytes chromosome Y clone:PTB-548J12, complete sequences Length = 199682 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 64959 catttcctttcaggacaagaatttac 64984
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Minus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 16037571 catttcctttcaggacaagaatttac 16037546
>emb|BX649311.10| Zebrafish DNA sequence from clone DKEY-63I8 in linkage group 2, complete sequence Length = 228024 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 aaaactgcatttcattta 18 |||||||||||||||||| Sbjct: 115256 aaaactgcatttcattta 115273
>gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, complete sequence Length = 55775 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 42168 catttccttttaggacaagaatttac 42193
>gb|AC105270.2| Homo sapiens chromosome 1 clone RP4-684L20, complete sequence Length = 158043 Score = 36.2 bits (18), Expect = 2.9 Identities = 21/22 (95%) Strand = Plus / Minus Query: 10 tttcatttaaggacaagaattt 31 ||||||||||| |||||||||| Sbjct: 146816 tttcatttaagtacaagaattt 146795
>gb|AC073210.8| Homo sapiens BAC clone RP11-460N20 from 7, complete sequence Length = 203396 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 15683 catttcctttcaggacaagaatttac 15708
>gb|AC024329.9| Homo sapiens, clone RP11-30P9, complete sequence Length = 158921 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 11 ttcatttaaggacaagaa 28 |||||||||||||||||| Sbjct: 59644 ttcatttaaggacaagaa 59661
>dbj|AK029175.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4831405L17 product:unclassifiable, full insert sequence Length = 4222 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 11 ttcatttaaggacaagaa 28 |||||||||||||||||| Sbjct: 2114 ttcatttaaggacaagaa 2131
>gb|AC079869.22|AC079869 Mus musculus 9 BAC RP23-49M18 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 243675 Score = 36.2 bits (18), Expect = 2.9 Identities = 21/22 (95%) Strand = Plus / Minus Query: 9 atttcatttaaggacaagaatt 30 ||||||||||||||||| |||| Sbjct: 27060 atttcatttaaggacaaaaatt 27039
>gb|AC000053.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 817g In IGLC Region, complete sequence Length = 52752 Score = 36.2 bits (18), Expect = 2.9 Identities = 21/22 (95%) Strand = Plus / Minus Query: 11 ttcatttaaggacaagaattta 32 |||||||||||||||| ||||| Sbjct: 47162 ttcatttaaggacaagtattta 47141
>gb|AC002060.4| Homo sapiens Chromosome 22q11.2 BAC Clone 142e2 In IGLC Region, complete sequence Length = 166287 Score = 36.2 bits (18), Expect = 2.9 Identities = 21/22 (95%) Strand = Plus / Minus Query: 11 ttcatttaaggacaagaattta 32 |||||||||||||||| ||||| Sbjct: 139267 ttcatttaaggacaagtattta 139246
>gb|BC017967.1| Homo sapiens major histocompatibility complex, class II, DP beta 2 (pseudogene), mRNA (cDNA clone MGC:24119 IMAGE:4663904), complete cds Length = 1220 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 1059 catttccttttaggacaagaatttac 1084
>gb|AC148711.1| Macaca mulatta Major Histocompatibility Complex BAC MMU404O15, complete sequence Length = 157177 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 69563 catttccttttaggacaagaatttac 69588
>gb|AC148674.1| Macaca mulatta Major Histocompatibility Complex BAC MMU103F20, complete sequence Length = 174172 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 27771 catttccttttaggacaagaatttac 27796
>gb|AC156640.2| Mus musculus BAC clone RP23-313M2 from chromosome 9, complete sequence Length = 175708 Score = 36.2 bits (18), Expect = 2.9 Identities = 21/22 (95%) Strand = Plus / Minus Query: 9 atttcatttaaggacaagaatt 30 ||||||||||||||||| |||| Sbjct: 103171 atttcatttaaggacaaaaatt 103150
>gb|AC009479.4|AC009479 Homo sapiens BAC clone RP11-278L6 from Y, complete sequence Length = 155299 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 17571 catttccttttaggacaagaatttac 17596
>gb|AC012062.4|AC012062 Homo sapiens BAC clone RP11-80E19 from Y, complete sequence Length = 42395 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 26799 catttccttttaggacaagaatttac 26824
>gb|AC007380.3| Homo sapiens BAC clone RP11-150O13 from 2, complete sequence Length = 207362 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 catttcatttaaggacaagaatttac 33 ||||| |||| ||||||||||||||| Sbjct: 143550 cattttattttaggacaagaatttac 143575
>gb|AC006927.27| Homo sapiens 12 BAC RP11-444J21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 114701 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Minus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 53742 catttccttttaggacaagaatttac 53717
>gb|AC147219.5| Mus musculus BAC clone RP23-37K18 from 18, complete sequence Length = 183177 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 aaactgcatttcatttaa 19 |||||||||||||||||| Sbjct: 9749 aaactgcatttcatttaa 9766
>gb|AC154638.2| Mus musculus BAC clone RP23-303O21 from 13, complete sequence Length = 162064 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 actgcatttcatttaagg 21 |||||||||||||||||| Sbjct: 145591 actgcatttcatttaagg 145608
>emb|BX649578.14| Zebrafish DNA sequence from clone CH211-196L7 in linkage group 18, complete sequence Length = 211922 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 11 ttcatttaaggacaagaa 28 |||||||||||||||||| Sbjct: 44433 ttcatttaaggacaagaa 44450
>emb|BX465199.9| Zebrafish DNA sequence from clone DKEY-84I7 in linkage group 5, complete sequence Length = 218103 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 11 ttcatttaaggacaagaa 28 |||||||||||||||||| Sbjct: 208758 ttcatttaaggacaagaa 208741
>emb|CT009497.8| Human DNA sequence from clone DAAP-90E5 on chromosome 6, complete sequence Length = 63203 Score = 36.2 bits (18), Expect = 2.9 Identities = 24/26 (92%) Strand = Plus / Plus Query: 8 catttcatttaaggacaagaatttac 33 |||||| ||| ||||||||||||||| Sbjct: 46734 catttccttttaggacaagaatttac 46759
>emb|AL445236.22| Human DNA sequence from clone RP13-77O11 on chromosome Xp11.21-11.3 Contains the 5' end of a novel gene (FLJ33130, FLJ35046, FLJ34279, FLJ38843, DKFZp667C0711), the PLAC6 gene for placenta-specific 6, a eukaryotic translation initiation factor 4A (EIF4A2) pseudogene, a GAGE family pseudogene, a novel protein similar to the GAGE family, a pseudogene similar to part of G antigen protein, a novel gene, a SSX family pseudogene, a S100 family pseudogene, the 3' end of a novel protein similar to the SSX family and two CpG islands, complete sequence Length = 149749 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 aaaactgcatttcattta 18 |||||||||||||||||| Sbjct: 81804 aaaactgcatttcattta 81821
>emb|AL669898.17| Mouse DNA sequence from clone RP23-6C3 on chromosome X, complete sequence Length = 220201 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 aaaactgcatttcattta 18 |||||||||||||||||| Sbjct: 105273 aaaactgcatttcattta 105256
>dbj|AP000361.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone N8E4 Length = 38437 Score = 36.2 bits (18), Expect = 2.9 Identities = 21/22 (95%) Strand = Plus / Minus Query: 11 ttcatttaaggacaagaattta 32 |||||||||||||||| ||||| Sbjct: 11503 ttcatttaaggacaagtattta 11482 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 388,775 Number of Sequences: 3902068 Number of extensions: 388775 Number of successful extensions: 103174 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102956 Number of HSP's gapped (non-prelim): 218 length of query: 33 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 13 effective length of database: 17,155,003,908 effective search space: 223015050804 effective search space used: 223015050804 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)
