ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart22b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB189041.1| Oryza sativa (japonica cultivar-group) OsPRR95 m... 327 2e-86
2dbj|AK067728.1| Oryza sativa (japonica cultivar-group) cDNA clon... 327 2e-86
3dbj|AK067314.1| Oryza sativa (japonica cultivar-group) cDNA clon... 327 2e-86
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 157 5e-35
5dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic D... 157 5e-35
6dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic D... 157 5e-35
7gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome... 76 1e-10
8dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
9dbj|AK120059.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
10gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 76 1e-10
11dbj|AB243686.1| Lemna gibba LgPRRH95 mRNA for pseudo-response re... 68 4e-08
12ref|NM_130245.2| Arabidopsis thaliana APRR9 (PSEUDO-RESPONSE REG... 54 5e-04
13gb|AF272040.1|AF272040 Arabidopsis thaliana timing of CAB expres... 54 5e-04
14dbj|AK221652.1| Arabidopsis thaliana mRNA for hypothetical prote... 54 5e-04
15dbj|AK221344.1| Arabidopsis thaliana mRNA for hypothetical prote... 54 5e-04
16dbj|AK175211.1| Arabidopsis thaliana mRNA for hypothetical prote... 54 5e-04
17dbj|AB046953.1| Arabidopsis thaliana APRR9 mRNA for pseudo-respo... 54 5e-04
18dbj|AP004939.1| Lotus japonicus genomic DNA, chromosome 1, clone... 48 0.034
19gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 44 0.52
20gb|AE006002.1| Caulobacter crescentus CB15 section 328 of 359 of... 44 0.52
21ref|XM_471176.1| Oryza sativa (japonica cultivar-group), predic... 42 2.1
22ref|XM_479630.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.1
23emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0... 42 2.1
24dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 42 2.1
25dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
27dbj|AB189042.1| Oryza sativa (indica cultivar-group) OsPRR37 mRN... 42 2.1
28dbj|AB189039.1| Oryza sativa (japonica cultivar-group) OsPRR37 m... 42 2.1
29dbj|AK121779.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
30dbj|AK112081.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
31dbj|AK110400.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
32dbj|AK066112.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
33dbj|AK059514.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
34emb|AL662985.3|OSJN00189 Oryza sativa genomic DNA, chromosome 4,... 42 2.1
35gb|AY493350.1| Holosticha sp. LFL-2004 alpha telomere binding pr... 40 8.2
36ref|XM_479559.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.2
37emb|AL162755.2|NMA4Z2491 Neisseria meningitidis serogroup A stra... 40 8.2
38dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 8.2
39gb|AE002098.2| Neisseria meningitidis MC58, complete genome 40 8.2
40dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
41gb|AC011593.8| Homo sapiens BAC clone RP11-437E9 from 2, complet... 40 8.2
42gb|AC084451.1|AC084451 Caenorhabditis briggsae cosmid CB023N02, ... 40 8.2
43dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 8.2
44dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
45dbj|AK111318.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.2
46dbj|AK110569.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.2
47gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 8.2
48gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 8.2
49emb|AL669965.13| Mouse DNA sequence from clone RP23-186F24 on ch... 40 8.2
50gb|AF028783.1|AF028783 Hypocrea jecorina proteasome regulatory s... 40 8.2
51dbj|AP006637.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 8.2 
>dbj|AB189041.1| Oryza sativa (japonica cultivar-group) OsPRR95 mRNA for
           pseudo-response regulator 95, complete cds
          Length = 1872

 Score =  327 bits (165), Expect = 2e-86
 Identities = 285/325 (87%)
 Strand = Plus / Plus

                                                                       
Query: 271 gctgccgatgatgcccgtcagggtgctgctcgccgagggcgacgactccacgcgccacgt 330
           |||||||| |||||| ||  ||||||||||||| |||||||||||||||||||||||| |
Sbjct: 111 gctgccgaggatgccggtgcgggtgctgctcgctgagggcgacgactccacgcgccacat 170

                                                                       
Query: 331 catctccgcgctgctccgcaagtgcggctaccacgtttctgcggcttctgatggtgtcaa 390
           ||||| ||||||||||||||||||||| || |  ||| | || || ||||||||||| ||
Sbjct: 171 catctgcgcgctgctccgcaagtgcgggtatcgagttgccgcagcctctgatggtgtgaa 230

                                                                       
Query: 391 ggcctgggaattactaaaggaaaaatcgttcaaaatagatcttgtcctcactgaagttga 450
            || |||||  |||||||||||||||| ||||| ||||| |||||  | |||||||||||
Sbjct: 231 agcgtgggacatactaaaggaaaaatctttcaatatagaccttgttttaactgaagttga 290

                                                                       
Query: 451 acttccttccatgtctgggttcctcctactctccacgatcatggaacatgacgcctgcaa 510
           |||||| |  |||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 291 acttcccttgatgtctgggttcctgctgctctccacgatcatggaacatgacgcatgcaa 350

                                                                       
Query: 511 gaatatccctgtcataatgatgtcttcgaatgatgcagttagcatggttttcaaatgcat 570
           ||||||||| ||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct: 351 gaatatccccgtcataatgatgtcttcaaatgattccgttagcatggttttcaaatgcat 410

                                    
Query: 571 gctgaagggcgcagccgatttcctt 595
           ||| ||||| || || |||||||||
Sbjct: 411 gctaaagggtgctgcagatttcctt 435
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>dbj|AK067728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116P12, full
           insert sequence
          Length = 2399

 Score =  327 bits (165), Expect = 2e-86
 Identities = 285/325 (87%)
 Strand = Plus / Plus

                                                                       
Query: 271 gctgccgatgatgcccgtcagggtgctgctcgccgagggcgacgactccacgcgccacgt 330
           |||||||| |||||| ||  ||||||||||||| |||||||||||||||||||||||| |
Sbjct: 247 gctgccgaggatgccggtgcgggtgctgctcgctgagggcgacgactccacgcgccacat 306

                                                                       
Query: 331 catctccgcgctgctccgcaagtgcggctaccacgtttctgcggcttctgatggtgtcaa 390
           ||||| ||||||||||||||||||||| || |  ||| | || || ||||||||||| ||
Sbjct: 307 catctgcgcgctgctccgcaagtgcgggtatcgagttgccgcagcctctgatggtgtgaa 366

                                                                       
Query: 391 ggcctgggaattactaaaggaaaaatcgttcaaaatagatcttgtcctcactgaagttga 450
            || |||||  |||||||||||||||| ||||| ||||| |||||  | |||||||||||
Sbjct: 367 agcgtgggacatactaaaggaaaaatctttcaatatagaccttgttttaactgaagttga 426

                                                                       
Query: 451 acttccttccatgtctgggttcctcctactctccacgatcatggaacatgacgcctgcaa 510
           |||||| |  |||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 427 acttcccttgatgtctgggttcctgctgctctccacgatcatggaacatgacgcatgcaa 486

                                                                       
Query: 511 gaatatccctgtcataatgatgtcttcgaatgatgcagttagcatggttttcaaatgcat 570
           ||||||||| ||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct: 487 gaatatccccgtcataatgatgtcttcaaatgattccgttagcatggttttcaaatgcat 546

                                    
Query: 571 gctgaagggcgcagccgatttcctt 595
           ||| ||||| || || |||||||||
Sbjct: 547 gctaaagggtgctgcagatttcctt 571
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>dbj|AK067314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102G21, full
           insert sequence
          Length = 2555

 Score =  327 bits (165), Expect = 2e-86
 Identities = 285/325 (87%)
 Strand = Plus / Plus

                                                                       
Query: 271 gctgccgatgatgcccgtcagggtgctgctcgccgagggcgacgactccacgcgccacgt 330
           |||||||| |||||| ||  ||||||||||||| |||||||||||||||||||||||| |
Sbjct: 377 gctgccgaggatgccggtgcgggtgctgctcgctgagggcgacgactccacgcgccacat 436

                                                                       
Query: 331 catctccgcgctgctccgcaagtgcggctaccacgtttctgcggcttctgatggtgtcaa 390
           ||||| ||||||||||||||||||||| || |  ||| | || || ||||||||||| ||
Sbjct: 437 catctgcgcgctgctccgcaagtgcgggtatcgagttgccgcagcctctgatggtgtgaa 496

                                                                       
Query: 391 ggcctgggaattactaaaggaaaaatcgttcaaaatagatcttgtcctcactgaagttga 450
            || |||||  |||||||||||||||| ||||| ||||| |||||  | |||||||||||
Sbjct: 497 agcgtgggacatactaaaggaaaaatctttcaatatagaccttgttttaactgaagttga 556

                                                                       
Query: 451 acttccttccatgtctgggttcctcctactctccacgatcatggaacatgacgcctgcaa 510
           |||||| |  |||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 557 acttcccttgatgtctgggttcctgctgctctccacgatcatggaacatgacgcatgcaa 616

                                                                       
Query: 511 gaatatccctgtcataatgatgtcttcgaatgatgcagttagcatggttttcaaatgcat 570
           ||||||||| ||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct: 617 gaatatccccgtcataatgatgtcttcaaatgattccgttagcatggttttcaaatgcat 676

                                    
Query: 571 gctgaagggcgcagccgatttcctt 595
           ||| ||||| || || |||||||||
Sbjct: 677 gctaaagggtgctgcagatttcctt 701
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  157 bits (79), Expect = 5e-35
 Identities = 133/151 (88%)
 Strand = Plus / Minus

                                                                            
Query: 377      tctgatggtgtcaaggcctgggaattactaaaggaaaaatcgttcaaaatagatcttgtc 436
                ||||||||||| || || |||||  |||||||||||||||| ||||| ||||| ||||| 
Sbjct: 20587325 tctgatggtgtgaaagcgtgggacatactaaaggaaaaatctttcaatatagaccttgtt 20587266

                                                                            
Query: 437      ctcactgaagttgaacttccttccatgtctgggttcctcctactctccacgatcatggaa 496
                 | ||||||||||||||||| |  |||||||||||||| || ||||||||||||||||||
Sbjct: 20587265 ttaactgaagttgaacttcccttgatgtctgggttcctgctgctctccacgatcatggaa 20587206

                                               
Query: 497      catgacgcctgcaagaatatccctgtcataa 527
                |||||||| |||||||||||||| |||||||
Sbjct: 20587205 catgacgcatgcaagaatatccccgtcataa 20587175



 Score =  117 bits (59), Expect = 4e-23
 Identities = 80/87 (91%)
 Strand = Plus / Minus

                                                                            
Query: 271      gctgccgatgatgcccgtcagggtgctgctcgccgagggcgacgactccacgcgccacgt 330
                |||||||| |||||| ||  ||||||||||||| |||||||||||||||||||||||| |
Sbjct: 20588154 gctgccgaggatgccggtgcgggtgctgctcgctgagggcgacgactccacgcgccacat 20588095

                                           
Query: 331      catctccgcgctgctccgcaagtgcgg 357
                ||||| |||||||||||||||||||||
Sbjct: 20588094 catctgcgcgctgctccgcaagtgcgg 20588068



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                            
Query: 528      tgatgtcttcgaatgatgcagttagcatggttttcaaatgcatgctgaagggcgcagccg 587
                |||||||||| |||||| | |||||||||||||||||||||||||| ||||| || || |
Sbjct: 20587082 tgatgtcttcaaatgattccgttagcatggttttcaaatgcatgctaaagggtgctgcag 20587023

                        
Query: 588      atttcctt 595
                ||||||||
Sbjct: 20587022 atttcctt 20587015
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>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1254_E07
          Length = 124028

 Score =  157 bits (79), Expect = 5e-35
 Identities = 133/151 (88%)
 Strand = Plus / Minus

                                                                          
Query: 377    tctgatggtgtcaaggcctgggaattactaaaggaaaaatcgttcaaaatagatcttgtc 436
              ||||||||||| || || |||||  |||||||||||||||| ||||| ||||| ||||| 
Sbjct: 104972 tctgatggtgtgaaagcgtgggacatactaaaggaaaaatctttcaatatagaccttgtt 104913

                                                                          
Query: 437    ctcactgaagttgaacttccttccatgtctgggttcctcctactctccacgatcatggaa 496
               | ||||||||||||||||| |  |||||||||||||| || ||||||||||||||||||
Sbjct: 104912 ttaactgaagttgaacttcccttgatgtctgggttcctgctgctctccacgatcatggaa 104853

                                             
Query: 497    catgacgcctgcaagaatatccctgtcataa 527
              |||||||| |||||||||||||| |||||||
Sbjct: 104852 catgacgcatgcaagaatatccccgtcataa 104822



 Score =  117 bits (59), Expect = 4e-23
 Identities = 80/87 (91%)
 Strand = Plus / Minus

                                                                          
Query: 271    gctgccgatgatgcccgtcagggtgctgctcgccgagggcgacgactccacgcgccacgt 330
              |||||||| |||||| ||  ||||||||||||| |||||||||||||||||||||||| |
Sbjct: 105801 gctgccgaggatgccggtgcgggtgctgctcgctgagggcgacgactccacgcgccacat 105742

                                         
Query: 331    catctccgcgctgctccgcaagtgcgg 357
              ||||| |||||||||||||||||||||
Sbjct: 105741 catctgcgcgctgctccgcaagtgcgg 105715



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                          
Query: 528    tgatgtcttcgaatgatgcagttagcatggttttcaaatgcatgctgaagggcgcagccg 587
              |||||||||| |||||| | |||||||||||||||||||||||||| ||||| || || |
Sbjct: 104729 tgatgtcttcaaatgattccgttagcatggttttcaaatgcatgctaaagggtgctgcag 104670

                      
Query: 588    atttcctt 595
              ||||||||
Sbjct: 104669 atttcctt 104662
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>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0515E01
          Length = 140063

 Score =  157 bits (79), Expect = 5e-35
 Identities = 133/151 (88%)
 Strand = Plus / Minus

                                                                         
Query: 377   tctgatggtgtcaaggcctgggaattactaaaggaaaaatcgttcaaaatagatcttgtc 436
             ||||||||||| || || |||||  |||||||||||||||| ||||| ||||| ||||| 
Sbjct: 52983 tctgatggtgtgaaagcgtgggacatactaaaggaaaaatctttcaatatagaccttgtt 52924

                                                                         
Query: 437   ctcactgaagttgaacttccttccatgtctgggttcctcctactctccacgatcatggaa 496
              | ||||||||||||||||| |  |||||||||||||| || ||||||||||||||||||
Sbjct: 52923 ttaactgaagttgaacttcccttgatgtctgggttcctgctgctctccacgatcatggaa 52864

                                            
Query: 497   catgacgcctgcaagaatatccctgtcataa 527
             |||||||| |||||||||||||| |||||||
Sbjct: 52863 catgacgcatgcaagaatatccccgtcataa 52833



 Score =  117 bits (59), Expect = 4e-23
 Identities = 80/87 (91%)
 Strand = Plus / Minus

                                                                         
Query: 271   gctgccgatgatgcccgtcagggtgctgctcgccgagggcgacgactccacgcgccacgt 330
             |||||||| |||||| ||  ||||||||||||| |||||||||||||||||||||||| |
Sbjct: 53812 gctgccgaggatgccggtgcgggtgctgctcgctgagggcgacgactccacgcgccacat 53753

                                        
Query: 331   catctccgcgctgctccgcaagtgcgg 357
             ||||| |||||||||||||||||||||
Sbjct: 53752 catctgcgcgctgctccgcaagtgcgg 53726



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                         
Query: 528   tgatgtcttcgaatgatgcagttagcatggttttcaaatgcatgctgaagggcgcagccg 587
             |||||||||| |||||| | |||||||||||||||||||||||||| ||||| || || |
Sbjct: 52740 tgatgtcttcaaatgattccgttagcatggttttcaaatgcatgctaaagggtgctgcag 52681

                     
Query: 588   atttcctt 595
             ||||||||
Sbjct: 52680 atttcctt 52673
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>gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0052H02, complete sequence
          Length = 159632

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                         
Query: 293   gtgctgctcgccgagggcgacgactccacgcgccacgtcatctccgcgctgctccgcaag 352
             |||||||||| ||||  |||||||||||| ||||| ||| || ||||||| |||||||||
Sbjct: 51759 gtgctgctcgtcgagcacgacgactccacccgccaggtcgtcaccgcgctcctccgcaag 51818

                       
Query: 353   tgcggctacc 362
             ||||||||||
Sbjct: 51819 tgcggctacc 51828
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                           
Query: 293     gtgctgctcgccgagggcgacgactccacgcgccacgtcatctccgcgctgctccgcaag 352
               |||||||||| ||||  |||||||||||| ||||| ||| || ||||||| |||||||||
Sbjct: 2771952 gtgctgctcgtcgagcacgacgactccacccgccaggtcgtcaccgcgctcctccgcaag 2772011

                         
Query: 353     tgcggctacc 362
               ||||||||||
Sbjct: 2772012 tgcggctacc 2772021
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>dbj|AK120059.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E13, full
           insert sequence
          Length = 2345

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                       
Query: 293 gtgctgctcgccgagggcgacgactccacgcgccacgtcatctccgcgctgctccgcaag 352
           |||||||||| ||||  |||||||||||| ||||| ||| || ||||||| |||||||||
Sbjct: 135 gtgctgctcgtcgagcacgacgactccacccgccaggtcgtcaccgcgctcctccgcaag 194

                     
Query: 353 tgcggctacc 362
           ||||||||||
Sbjct: 195 tgcggctacc 204



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 506 tgcaagaatatccctgtcataatgatgtc 534
           |||||||| ||||| ||||||||||||||
Sbjct: 348 tgcaagaacatccccgtcataatgatgtc 376
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                           
Query: 293     gtgctgctcgccgagggcgacgactccacgcgccacgtcatctccgcgctgctccgcaag 352
               |||||||||| ||||  |||||||||||| ||||| ||| || ||||||| |||||||||
Sbjct: 2780983 gtgctgctcgtcgagcacgacgactccacccgccaggtcgtcaccgcgctcctccgcaag 2781042

                         
Query: 353     tgcggctacc 362
               ||||||||||
Sbjct: 2781043 tgcggctacc 2781052
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>dbj|AB243686.1| Lemna gibba LgPRRH95 mRNA for pseudo-response regulator 95
           homologue, complete cds
          Length = 1852

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                       
Query: 518 cctgtcataatgatgtcttcgaatgatgcagttagcatggttttcaaatgcatgctgaag 577
           |||||||||||||||||||| |||||| || | |  ||||| ||| ||||||||||||| 
Sbjct: 632 cctgtcataatgatgtcttctaatgattcaatgaagatggtgttcgaatgcatgctgaaa 691

                             
Query: 578 ggcgcagccgatttcctt 595
           || |||||||| ||||||
Sbjct: 692 ggtgcagccgacttcctt 709
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>ref|NM_130245.2| Arabidopsis thaliana APRR9 (PSEUDO-RESPONSE REGULATOR 9);
           transcription regulator AT2G46790 (APRR9) transcript
           variant AT2G46790.1 mRNA, complete cds
          Length = 1694

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 491 atggaacatgacgcctgcaagaatatccctgtcataatgatgtcttc 537
           ||||| ||||| || |||||||| || ||||||||||||||||||||
Sbjct: 425 atggagcatgaagcttgcaagaacattcctgtcataatgatgtcttc 471
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>gb|AF272040.1|AF272040 Arabidopsis thaliana timing of CAB expression 1-like protein mRNA,
           complete cds
          Length = 1407

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 491 atggaacatgacgcctgcaagaatatccctgtcataatgatgtcttc 537
           ||||| ||||| || |||||||| || ||||||||||||||||||||
Sbjct: 313 atggagcatgaagcttgcaagaacattcctgtcataatgatgtcttc 359
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>dbj|AK221652.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL09-37-D22
          Length = 1706

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 491 atggaacatgacgcctgcaagaatatccctgtcataatgatgtcttc 537
           ||||| ||||| || |||||||| || ||||||||||||||||||||
Sbjct: 425 atggagcatgaagcttgcaagaacattcctgtcataatgatgtcttc 471
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>dbj|AK221344.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL25-23-E15
          Length = 1768

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 491 atggaacatgacgcctgcaagaatatccctgtcataatgatgtcttc 537
           ||||| ||||| || |||||||| || ||||||||||||||||||||
Sbjct: 550 atggagcatgaagcttgcaagaacattcctgtcataatgatgtcttc 596
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>dbj|AK175211.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL21-63-M10
          Length = 1768

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 491 atggaacatgacgcctgcaagaatatccctgtcataatgatgtcttc 537
           ||||| ||||| || |||||||| || ||||||||||||||||||||
Sbjct: 550 atggagcatgaagcttgcaagaacattcctgtcataatgatgtcttc 596
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>dbj|AB046953.1| Arabidopsis thaliana APRR9 mRNA for pseudo-response regulator 9,
           complete cds
          Length = 1407

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 491 atggaacatgacgcctgcaagaatatccctgtcataatgatgtcttc 537
           ||||| ||||| || |||||||| || ||||||||||||||||||||
Sbjct: 313 atggagcatgaagcttgcaagaacattcctgtcataatgatgtcttc 359
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>dbj|AP004939.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT17M09, TM0105,
             complete sequence
          Length = 127990

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 528   tgatgtcttcgaatgatgcagttagcatggttttcaaatgcatg 571
             ||||||| || |||||  ||||||||||||| ||||||||||||
Sbjct: 23868 tgatgtcatctaatgactcagttagcatggtcttcaaatgcatg 23825
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 78      agcgcgagaagaaggaggagaagccgtctc 107
               |||||||| || ||||||||||||||||||
Sbjct: 1740838 agcgcgaggaggaggaggagaagccgtctc 1740809
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>gb|AE006002.1| Caulobacter crescentus CB15 section 328 of 359 of the complete genome
          Length = 14142

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 292  ggtgctgctcgccgagggcgac 313
            ||||||||||||||||||||||
Sbjct: 5288 ggtgctgctcgccgagggcgac 5309
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>ref|XM_471176.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3408

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 133  cgaggcggccgagctccggcg 153
            |||||||||||||||||||||
Sbjct: 1129 cgaggcggccgagctccggcg 1109
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>ref|XM_479630.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3312

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 506 tgcaagaatatccctgtcataatgatgtcttcgaatgatgc 546
           ||||||||||| || || || ||||||||||| ||||||||
Sbjct: 871 tgcaagaatattccagtgattatgatgtcttcaaatgatgc 911
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>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from
             chromosome 3 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 183327

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 133   cgaggcggccgagctccggcg 153
             |||||||||||||||||||||
Sbjct: 67250 cgaggcggccgagctccggcg 67230
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 274     gccgatgatgcccgtcagggt 294
               |||||||||||||||||||||
Sbjct: 3644205 gccgatgatgcccgtcagggt 3644185
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 133     cgaggcggccgagctccggcg 153
               |||||||||||||||||||||
Sbjct: 2023105 cgaggcggccgagctccggcg 2023085
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 133      cgaggcggccgagctccggcg 153
                |||||||||||||||||||||
Sbjct: 24688561 cgaggcggccgagctccggcg 24688541
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>dbj|AB189042.1| Oryza sativa (indica cultivar-group) OsPRR37 mRNA for
           pseudo-response regulator 37, complete cds
          Length = 2115

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 506 tgcaagaatatccctgtcataatgatgtcttcgaatgatgc 546
           ||||||||||| || || || ||||||||||| ||||||||
Sbjct: 403 tgcaagaatattccagtgattatgatgtcttcaaatgatgc 443
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>dbj|AB189039.1| Oryza sativa (japonica cultivar-group) OsPRR37 mRNA for
           pseudo-response regulator 37, complete cds
          Length = 2229

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 506 tgcaagaatatccctgtcataatgatgtcttcgaatgatgc 546
           ||||||||||| || || || ||||||||||| ||||||||
Sbjct: 403 tgcaagaatattccagtgattatgatgtcttcaaatgatgc 443
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>dbj|AK121779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093K02, full
            insert sequence
          Length = 4116

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 133  cgaggcggccgagctccggcg 153
            |||||||||||||||||||||
Sbjct: 1502 cgaggcggccgagctccggcg 1482
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>dbj|AK112081.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-H09, full
            insert sequence
          Length = 3835

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 133  cgaggcggccgagctccggcg 153
            |||||||||||||||||||||
Sbjct: 1213 cgaggcggccgagctccggcg 1193
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>dbj|AK110400.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-165-F08, full
            insert sequence
          Length = 3161

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 133  cgaggcggccgagctccggcg 153
            |||||||||||||||||||||
Sbjct: 1635 cgaggcggccgagctccggcg 1655
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>dbj|AK066112.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051N02, full
           insert sequence
          Length = 3312

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 506 tgcaagaatatccctgtcataatgatgtcttcgaatgatgc 546
           ||||||||||| || || || ||||||||||| ||||||||
Sbjct: 871 tgcaagaatattccagtgattatgatgtcttcaaatgatgc 911
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>dbj|AK059514.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-B09, full
           insert sequence
          Length = 731

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 506 tgcaagaatatccctgtcataatgatgtcttcgaatgatgc 546
           ||||||||||| || || || ||||||||||| ||||||||
Sbjct: 236 tgcaagaatattccagtgattatgatgtcttcaaatgatgc 276
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>emb|AL662985.3|OSJN00189 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06,
             complete sequence
          Length = 126447

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 133   cgaggcggccgagctccggcg 153
             |||||||||||||||||||||
Sbjct: 39765 cgaggcggccgagctccggcg 39745
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>gb|AY493350.1| Holosticha sp. LFL-2004 alpha telomere binding protein-like protein
            (aTBP) gene, complete sequence; macronuclear
          Length = 1811

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  ttgtcctcactgaagttgaa 451
            ||||||||||||||||||||
Sbjct: 1191 ttgtcctcactgaagttgaa 1210
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>ref|XM_479559.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 942

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  gagaagaaggaggagaagcc 102
           ||||||||||||||||||||
Sbjct: 437 gagaagaaggaggagaagcc 456
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>emb|AL162755.2|NMA4Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment
              4/7
          Length = 331801

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 271    gctgccgatgatgcccgtca 290
              ||||||||||||||||||||
Sbjct: 227594 gctgccgatgatgcccgtca 227575
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 258     aggtgcggcgggcgctgccg 277
               ||||||||||||||||||||
Sbjct: 3954186 aggtgcggcgggcgctgccg 3954205
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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 271     gctgccgatgatgcccgtca 290
               ||||||||||||||||||||
Sbjct: 1125519 gctgccgatgatgcccgtca 1125500
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 83       gagaagaaggaggagaagcc 102
                ||||||||||||||||||||
Sbjct: 28866691 gagaagaaggaggagaagcc 28866710
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>gb|AC011593.8| Homo sapiens BAC clone RP11-437E9 from 2, complete sequence
          Length = 130349

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    gagaagaaggaggagaagcc 102
             ||||||||||||||||||||
Sbjct: 10036 gagaagaaggaggagaagcc 10017
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>gb|AC084451.1|AC084451 Caenorhabditis briggsae cosmid CB023N02, complete sequence
          Length = 79813

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    cgcgagaagaaggaggagaa 99
             ||||||||||||||||||||
Sbjct: 41486 cgcgagaagaaggaggagaa 41505
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 285     ccgtcagggtgctgctcgccgagg 308
               ||||| ||||||||||||||||||
Sbjct: 7078451 ccgtccgggtgctgctcgccgagg 7078428
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>dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0008J01
          Length = 159900

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     gagaagaaggaggagaagcc 102
              ||||||||||||||||||||
Sbjct: 124377 gagaagaaggaggagaagcc 124396
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>dbj|AK111318.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-C11, full
           insert sequence
          Length = 799

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  gagaagaaggaggagaagcc 102
           ||||||||||||||||||||
Sbjct: 466 gagaagaaggaggagaagcc 447
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>dbj|AK110569.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-D09, full
           insert sequence
          Length = 942

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  gagaagaaggaggagaagcc 102
           ||||||||||||||||||||
Sbjct: 437 gagaagaaggaggagaagcc 456
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 258     aggtgcggcgggcgctgccg 277
               ||||||||||||||||||||
Sbjct: 3956473 aggtgcggcgggcgctgccg 3956492
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 293     gtgctgctcgccgagggcga 312
               ||||||||||||||||||||
Sbjct: 2894158 gtgctgctcgccgagggcga 2894177
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>emb|AL669965.13| Mouse DNA sequence from clone RP23-186F24 on chromosome 4, complete
             sequence
          Length = 181196

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 462   tgtctgggttcctcctactc 481
             ||||||||||||||||||||
Sbjct: 82002 tgtctgggttcctcctactc 81983
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>gb|AF028783.1|AF028783 Hypocrea jecorina proteasome regulatory subunit 12 (prs12) gene,
           complete cds
          Length = 2256

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 77  cagcgcgagaagaaggaggagaag 100
           ||||| ||||||||||||||||||
Sbjct: 651 cagcgtgagaagaaggaggagaag 628
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>dbj|AP006637.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT47I16, TM0208b,
            complete sequence
          Length = 33484

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                        
Query: 528  tgatgtcttcgaatgatgcagttagcatggttttcaaatgcatg 571
            ||||||||||  | ||| ||||||||||||| || |||||||||
Sbjct: 2144 tgatgtcttctcaggattcagttagcatggtgttgaaatgcatg 2187


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,904,491
Number of Sequences: 3902068
Number of extensions: 3904491
Number of successful extensions: 103832
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103093
Number of HSP's gapped (non-prelim): 736
length of query: 601
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 578
effective length of database: 17,143,297,704
effective search space: 9908826072912
effective search space used: 9908826072912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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