Clone Information

BLAST Search Result

Clone Name	bart22b02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	TMEDA_RABIT (Q28735) Transmembrane emp24 domain-containing prote...	54	4e-07
2	TMEDA_MESAU (O35587) Transmembrane protein Tmp21 precursor (21 k...	53	6e-07
3	TMEDA_BOVIN (Q5E971) Transmembrane emp24 domain-containing prote...	53	6e-07
4	TMEDA_PONPY (Q5RE32) Transmembrane emp24 domain-containing prote...	52	1e-06
5	TMEDA_HUMAN (P49755) Transmembrane emp24 domain-containing prote...	52	1e-06
6	TMEDA_RAT (Q63584) Transmembrane emp24 domain-containing protein...	52	2e-06
7	TMEDA_MOUSE (Q9D1D4) Transmembrane emp24 domain-containing prote...	52	2e-06
8	TMEDA_FUGRU (Q90515) Transmembrane emp24 domain-containing prote...	48	2e-05
9	ERP6_YEAST (P53198) Protein ERP6 precursor	41	0.003
10	GP153_HUMAN (Q6NV75) Probable G-protein coupled receptor 153 (G-...	37	0.055
11	ERV25_YEAST (P54837) Protein ERV25 precursor	36	0.071
12	TMED9_BOVIN (Q3T133) Transmembrane emp24 domain-containing prote...	35	0.16
13	TMED9_MOUSE (Q99KF1) Transmembrane emp24 domain-containing prote...	35	0.16
14	TMED9_HUMAN (Q9BVK6) Transmembrane emp24 domain-containing prote...	35	0.16
15	TMED4_MOUSE (Q8R1V4) Transmembrane emp24 domain-containing prote...	35	0.16
16	ERP5_YEAST (P38819) Protein ERP5 precursor	34	0.35
17	TMED4_HUMAN (Q7Z7H5) Transmembrane emp24 domain-containing prote...	33	0.46
18	RHO_MICLU (P52154) Transcription termination factor rho (EC 3.6....	33	0.46
19	HSP1_ISOMA (P42136) Sperm protamine P1	32	1.0
20	DHE3_PYRKO (O59650) Glutamate dehydrogenase (EC 1.4.1.3) (GDH)	32	1.3
21	PBPC_ECOLI (P76577) Penicillin-binding protein 1C (PBP-1c) (PBP1...	31	2.3
22	HSP1_PERGU (P42147) Sperm protamine P1	31	2.3
23	CD2A2_RAT (Q8QZZ9) Cyclin-dependent kinase inhibitor 2A, isoform...	31	2.3
24	BCA_STRA1 (Q02192) C protein alpha-antigen precursor	31	3.0
25	SMUF1_DROME (Q9V853) E3 ubiquitin-protein ligase Smurf1 (EC 6.3....	30	3.9
26	FAD11_MYCTU (Q10776) Putative fatty-acid--CoA ligase fadD11 (EC ...	30	3.9
27	LRP1_HHV1F (P17588) Latency-related protein 1	30	5.1
28	TMED2_RAT (Q63524) Transmembrane emp24 domain trafficking protei...	30	6.7
29	TMED2_MOUSE (Q9R0Q3) Transmembrane emp24 domain trafficking prot...	30	6.7
30	TMED2_HUMAN (Q15363) Transmembrane emp24 domain trafficking prot...	30	6.7
31	LBD18_ARATH (O22131) LOB domain protein 18	30	6.7
32	ERME_SACER (P07287) rRNA adenine N-6-methyltransferase (EC 2.1.1...	30	6.7
33	TMED2_CRIGR (P49020) Transmembrane emp24 domain trafficking prot...	30	6.7
34	SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (S...	29	8.7
35	SFR15_RAT (Q63627) Splicing factor, arginine/serine-rich 15 (CTD...	29	8.7
36	UBP19_HUMAN (O94966) Ubiquitin carboxyl-terminal hydrolase 19 (E...	29	8.7
37	SCRT1_HUMAN (Q9BWW7) Transcriptional repressor scratch 1 (Scratc...	29	8.7
38	ACPD_RALSO (Q8XQG9) Putative acyl carrier protein phosphodiester...	29	8.7

>TMEDA_RABIT (Q28735) Transmembrane emp24 domain-containing protein 10 precursor|
           (Transmembrane protein Tmp21) (21 kDa transmembrane
           trafficking protein) (Integral membrane protein p23)
          Length = 219

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 37/127 (29%), Positives = 57/127 (44%)
 Frame = +2

Query: 206 ALRFDLESGHTKCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVTSPYGNSM 385
           A+ F L     KC+ +EI  D +  G Y +   D S     L    R  L++T   G+ +
Sbjct: 31  AISFHLPVNSRKCLREEIHKDLLVTGAYEIT--DQSGGAGGL----RTHLKITDSAGHIL 84

Query: 386 HYSENVQSGHFAFTAVEAGDYLACFWAPDHKPPVTVTFEFDWKSGVTAKDWSNVAKKGKV 565
           +  E+   G FAFT  +   +  CF +             D K GV AK++  +AK  K+
Sbjct: 85  YSKEDASKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKL 144

Query: 566 DMMELEL 586
             +E+EL
Sbjct: 145 KPLEVEL 151

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>TMEDA_MESAU (O35587) Transmembrane protein Tmp21 precursor (21 kDa|
           transmembrane trafficking protein) (Integral membrane
           protein p23)
          Length = 219

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 37/127 (29%), Positives = 57/127 (44%)
 Frame = +2

Query: 206 ALRFDLESGHTKCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVTSPYGNSM 385
           A+ F L     KC+ +EI  D +  G Y +   D S     L    R  L++T   G+ +
Sbjct: 31  AISFHLPVNSRKCLREEIHKDLLVTGAYEIT--DQSGGAGGL----RTHLKITDSAGHIL 84

Query: 386 HYSENVQSGHFAFTAVEAGDYLACFWAPDHKPPVTVTFEFDWKSGVTAKDWSNVAKKGKV 565
           +  E+   G FAFT  +   +  CF +             D K GV AK++  +AK  K+
Sbjct: 85  YAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKL 144

Query: 566 DMMELEL 586
             +E+EL
Sbjct: 145 KPLEVEL 151

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>TMEDA_BOVIN (Q5E971) Transmembrane emp24 domain-containing protein 10 precursor|
           (Transmembrane protein Tmp21) (21 kDa transmembrane
           trafficking protein)
          Length = 219

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 37/127 (29%), Positives = 57/127 (44%)
 Frame = +2

Query: 206 ALRFDLESGHTKCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVTSPYGNSM 385
           A+ F L     KC+ +EI  D +  G Y +   D S     L    R  L++T   G+ +
Sbjct: 31  AISFHLPVNSRKCLREEIHKDLLVTGAYEIT--DQSGGAGGL----RTHLKITDSAGHIL 84

Query: 386 HYSENVQSGHFAFTAVEAGDYLACFWAPDHKPPVTVTFEFDWKSGVTAKDWSNVAKKGKV 565
           +  E+   G FAFT  +   +  CF +             D K GV AK++  +AK  K+
Sbjct: 85  YSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKL 144

Query: 566 DMMELEL 586
             +E+EL
Sbjct: 145 KPLEVEL 151

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>TMEDA_PONPY (Q5RE32) Transmembrane emp24 domain-containing protein 10 precursor|
           (Transmembrane protein Tmp21) (21 kDa transmembrane
           trafficking protein)
          Length = 219

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 37/127 (29%), Positives = 57/127 (44%)
 Frame = +2

Query: 206 ALRFDLESGHTKCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVTSPYGNSM 385
           A+ F L     KC+ +EI  D +  G Y +   D S     L    R  L++T   G+ +
Sbjct: 31  AISFHLPINSRKCLREEIHKDLLVTGAYEI--SDQSGGAGGL----RSHLKITDSAGHIL 84

Query: 386 HYSENVQSGHFAFTAVEAGDYLACFWAPDHKPPVTVTFEFDWKSGVTAKDWSNVAKKGKV 565
           +  E+   G FAFT  +   +  CF +             D K GV AK++  +AK  K+
Sbjct: 85  YSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKL 144

Query: 566 DMMELEL 586
             +E+EL
Sbjct: 145 KPLEVEL 151

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>TMEDA_HUMAN (P49755) Transmembrane emp24 domain-containing protein 10 precursor|
           (Transmembrane protein Tmp21) (21 kDa transmembrane
           trafficking protein) (p24delta) (S31III125) (S31I125)
           (Tmp-21-I)
          Length = 219

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 37/127 (29%), Positives = 57/127 (44%)
 Frame = +2

Query: 206 ALRFDLESGHTKCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVTSPYGNSM 385
           A+ F L     KC+ +EI  D +  G Y +   D S     L    R  L++T   G+ +
Sbjct: 31  AISFHLPINSRKCLREEIHKDLLVTGAYEI--SDQSGGAGGL----RSHLKITDSAGHIL 84

Query: 386 HYSENVQSGHFAFTAVEAGDYLACFWAPDHKPPVTVTFEFDWKSGVTAKDWSNVAKKGKV 565
           +  E+   G FAFT  +   +  CF +             D K GV AK++  +AK  K+
Sbjct: 85  YSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKL 144

Query: 566 DMMELEL 586
             +E+EL
Sbjct: 145 KPLEVEL 151

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>TMEDA_RAT (Q63584) Transmembrane emp24 domain-containing protein 10 precursor|
           (Transmembrane protein Tmp21) (21 kDa transmembrane
           trafficking protein)
          Length = 219

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 36/126 (28%), Positives = 56/126 (44%)
 Frame = +2

Query: 209 LRFDLESGHTKCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVTSPYGNSMH 388
           + F L     KC+ +EI  D +  G Y +   D S     L    R  L++T   G+ ++
Sbjct: 32  ISFHLPVNSRKCLREEIHKDLLVTGAYEIT--DQSGGAGGL----RTHLKITDSAGHILY 85

Query: 389 YSENVQSGHFAFTAVEAGDYLACFWAPDHKPPVTVTFEFDWKSGVTAKDWSNVAKKGKVD 568
             E+   G FAFT  +   +  CF +             D K GV AK++  +AK  K+ 
Sbjct: 86  AKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLK 145

Query: 569 MMELEL 586
            +E+EL
Sbjct: 146 PLEVEL 151

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>TMEDA_MOUSE (Q9D1D4) Transmembrane emp24 domain-containing protein 10 precursor|
           (Transmembrane protein Tmp21) (21 kDa transmembrane
           trafficking protein)
          Length = 219

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 36/126 (28%), Positives = 56/126 (44%)
 Frame = +2

Query: 209 LRFDLESGHTKCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVTSPYGNSMH 388
           + F L     KC+ +EI  D +  G Y +   D S     L    R  L++T   G+ ++
Sbjct: 32  ISFHLPVNSRKCLREEIHKDLLVTGAYEIT--DQSGGAGGL----RTHLKITDSAGHILY 85

Query: 389 YSENVQSGHFAFTAVEAGDYLACFWAPDHKPPVTVTFEFDWKSGVTAKDWSNVAKKGKVD 568
             E+   G FAFT  +   +  CF +             D K GV AK++  +AK  K+ 
Sbjct: 86  AKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLK 145

Query: 569 MMELEL 586
            +E+EL
Sbjct: 146 PLEVEL 151

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>TMEDA_FUGRU (Q90515) Transmembrane emp24 domain-containing protein 10 precursor|
           (Transmembrane protein Tmp21) (S31III125)
          Length = 213

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 30/127 (23%), Positives = 55/127 (43%)
 Frame = +2

Query: 206 ALRFDLESGHTKCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVTSPYGNSM 385
           ++ F L     KC+ +EI  D +  G+Y +     +   +          ++T    +++
Sbjct: 19  SISFFLPVNTRKCLREEIHKDVLVTGEYEISEQVVTVHTSSTVVGDGSIFKITDSSSHTL 78

Query: 386 HYSENVQSGHFAFTAVEAGDYLACFWAPDHKPPVTVTFEFDWKSGVTAKDWSNVAKKGKV 565
           +  E+   G FAFT  +   +  CF +             D K GV AK++  +AK  K+
Sbjct: 79  YSKEDATKGKFAFTTEDYDMFEVCFESKCTGRVPDQLVNLDMKHGVEAKNYEEIAKVEKL 138

Query: 566 DMMELEL 586
             +E+EL
Sbjct: 139 KPLEVEL 145

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>ERP6_YEAST (P53198) Protein ERP6 precursor|
          Length = 216

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
 Frame = +2

Query: 230 GHTKCISDEIKVDSMAVGKYSVVGPDPSYPDAQLP--DSHRVSLRVTSPYGNSMH--YSE 397
           G  KC   E+  D++  G Y++   D    D  LP  + + + + V   + N+    + +
Sbjct: 27  GDRKCFLKELSKDTLLKGSYNLEVYDDKLADYALPSYNDYGIVIDVEEVFDNNHRVVHQQ 86

Query: 398 NVQSGHFAFTAVEAGDYLACF------WAPDHKPPVTVTFEFDWKS 517
              SG F+F A+E+G+Y  C       W    K  + + FE  +++
Sbjct: 87  GSPSGDFSFLALESGEYKICLQSRVNNWVGKTKTKLEIEFEVGFEA 132

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>GP153_HUMAN (Q6NV75) Probable G-protein coupled receptor 153 (G-protein coupled|
           receptor PGR1)
          Length = 609

 Score = 36.6 bits (83), Expect = 0.055
 Identities = 34/89 (38%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
 Frame = -2

Query: 300 PTTLYLPTAMESTLISSEMHLVWPDSRSNRRAR--ADGEDAKRTAARRRSAEGGRHL--G 133
           P   +LP       +++  HLV P     RRA   A  EDA  + ARRRSAE    L   
Sbjct: 407 PLPAFLPRWGSGEDLAALAHLVLPAGPERRRASLLAFAEDAPPSRARRRSAESLLSLRPS 466

Query: 132 AGDPGRRAAM-AGDRSGNRRARQGPRTKS 49
           A D G R A  +   S  RR   GPR+ S
Sbjct: 467 ALDSGPRGARDSPPGSPRRRPGPGPRSAS 495

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>ERV25_YEAST (P54837) Protein ERV25 precursor|
          Length = 211

 Score = 36.2 bits (82), Expect = 0.071
 Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 6/134 (4%)
 Frame = +2

Query: 203 RALRFDLESG---HTKCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVTSPY 373
           + L FD+ +       CI D +    + V           + D  + D  +++L V    
Sbjct: 19  QGLHFDIAASTDPEQVCIRDFVTEGQLVVADI--------HSDGSVGDGQKLNLFVRDSV 70

Query: 374 GNSMHYSENVQSG-HFAFTAVEAGDYLACF--WAPDHKPPVTVTFEFDWKSGVTAKDWSN 544
           GN      +       AFTA  +  +  CF   A      ++   E D +SG  A+DW+ 
Sbjct: 71  GNEYRRKRDFAGDVRVAFTAPSSTAFDVCFENQAQYRGRSLSRAIELDIESGAEARDWNK 130

Query: 545 VAKKGKVDMMELEL 586
           ++   K+  +E+EL
Sbjct: 131 ISANEKLKPIEVEL 144

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>TMED9_BOVIN (Q3T133) Transmembrane emp24 domain-containing protein 9 precursor|
          Length = 235

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 5/132 (3%)
 Frame = +2

Query: 206 ALRFDLESGHTKCISDEIKVDSMAVGKYSVVGPDPSYPDAQ-LPDSHRVSLRVTSPYGNS 382
           AL F +     KC  +EI  ++M +G Y     D    + Q       + + V  P    
Sbjct: 37  ALYFHIGETEKKCFIEEIPDETMVIGNYRTQLYDKQREEYQPATPGLGMFVEVKDPEDKV 96

Query: 383 MHYSENVQSGHFAFTAVEAGDYLACFWAPDHKPPV----TVTFEFDWKSGVTAKDWSNVA 550
           +   +    G F FT+   G++  C  +   K  +     +    D + G  A D++ +A
Sbjct: 97  ILARQYGSEGRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIA 156

Query: 551 KKGKVDMMELEL 586
            K K+  ++L +
Sbjct: 157 AKDKLSELQLRV 168

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>TMED9_MOUSE (Q99KF1) Transmembrane emp24 domain-containing protein 9 precursor|
           (Glycoprotein 25L2)
          Length = 214

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 5/132 (3%)
 Frame = +2

Query: 206 ALRFDLESGHTKCISDEIKVDSMAVGKYSVVGPDPSYPDAQ-LPDSHRVSLRVTSPYGNS 382
           AL F +     KC  +EI  ++M +G Y     D    + Q       + + V  P    
Sbjct: 16  ALYFHIGETEKKCFIEEIPDETMVIGNYRTQLYDKQREEYQPATPGLGMFVEVKDPEDKV 75

Query: 383 MHYSENVQSGHFAFTAVEAGDYLACFWAPDHKPPV----TVTFEFDWKSGVTAKDWSNVA 550
           +   +    G F FT+   G++  C  +   K  +     +    D + G  A D++ +A
Sbjct: 76  ILARQYGSEGRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIA 135

Query: 551 KKGKVDMMELEL 586
            K K+  ++L +
Sbjct: 136 AKDKLSELQLRV 147

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>TMED9_HUMAN (Q9BVK6) Transmembrane emp24 domain-containing protein 9 precursor|
           (Glycoprotein 25L2)
          Length = 214

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 5/132 (3%)
 Frame = +2

Query: 206 ALRFDLESGHTKCISDEIKVDSMAVGKYSVVGPDPSYPDAQ-LPDSHRVSLRVTSPYGNS 382
           AL F +     KC  +EI  ++M +G Y     D    + Q       + + V  P    
Sbjct: 16  ALYFHIGETEKKCFIEEIPDETMVIGNYRTQLYDKQREEYQPATPGLGMFVEVKDPEDKV 75

Query: 383 MHYSENVQSGHFAFTAVEAGDYLACFWAPDHKPPV----TVTFEFDWKSGVTAKDWSNVA 550
           +   +    G F FT+   G++  C  +   K  +     +    D + G  A D++ +A
Sbjct: 76  ILARQYGSEGRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIA 135

Query: 551 KKGKVDMMELEL 586
            K K+  ++L +
Sbjct: 136 AKDKLSELQLRV 147

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>TMED4_MOUSE (Q8R1V4) Transmembrane emp24 domain-containing protein 4 precursor|
           (p26)
          Length = 227

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 6/132 (4%)
 Frame = +2

Query: 203 RALRFDLESGHTKCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVT--SPYG 376
           R L F +     +C  +EI  ++M +G Y     D    +  LP +  + + V    P G
Sbjct: 28  RGLYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQ-KEVFLPSTPGLGMHVEVKDPDG 86

Query: 377 NSMHYSENVQSGHFAFTAVEAGDYLACFWAPDHKPPV----TVTFEFDWKSGVTAKDWSN 544
             +   +    G F FT+   GD+  C  +   +  +     +    D + G  A ++  
Sbjct: 87  KVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMALFAGGKLRVHLDIQVGEHANNYPE 146

Query: 545 VAKKGKVDMMEL 580
           +A K K+  ++L
Sbjct: 147 IAAKDKLTELQL 158

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>ERP5_YEAST (P38819) Protein ERP5 precursor|
          Length = 212

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 1/127 (0%)
 Frame = +2

Query: 206 ALRFDLESGHTKCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVTSPYGNSM 385
           A+ F  +SG TKC  + +   ++ +G   +        +     S  +++  T    + +
Sbjct: 21  AVHFYAKSGETKCFYEHLSRGNLLIGDLDLYVEKDGLFEEDPESSLTITVDETFDNDHRV 80

Query: 386 HYSENVQSGHFAFTAVEAGDYLACFWAPDHKPPVTVTFEFDWKSG-VTAKDWSNVAKKGK 562
              +N  +G   FTA++ G++  CF     K   T+    + + G V A D      K K
Sbjct: 81  LNQKNSHTGDVTFTALDTGEHRFCFTPFYSKKSATLRVFIELEIGNVEALD-----SKKK 135

Query: 563 VDMMELE 583
            DM  L+
Sbjct: 136 EDMNSLK 142

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>TMED4_HUMAN (Q7Z7H5) Transmembrane emp24 domain-containing protein 4 precursor|
          Length = 227

 Score = 33.5 bits (75), Expect = 0.46
 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 6/132 (4%)
 Frame = +2

Query: 203 RALRFDLESGHTKCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVT--SPYG 376
           + L F +     +C  +EI  ++M +G Y     D    +  LP +  + + V    P G
Sbjct: 28  QGLYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQ-KEVFLPSTPGLGMHVEVKDPDG 86

Query: 377 NSMHYSENVQSGHFAFTAVEAGDYLACFWAPDHKPPV----TVTFEFDWKSGVTAKDWSN 544
             +   +    G F FT+   GD+  C  +   +  +     +    D + G  A ++  
Sbjct: 87  KVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMALFAGGKLRVHLDIQVGEHANNYPE 146

Query: 545 VAKKGKVDMMEL 580
           +A K K+  ++L
Sbjct: 147 IAAKDKLTELQL 158

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>RHO_MICLU (P52154) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 690

 Score = 33.5 bits (75), Expect = 0.46
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -2

Query: 228 DSRSNRRARADGEDAKRTAARRRSAEGGR-HLGAGDPGRRAAMAGDRSGNRRARQGPRTK 52
           + R N R R +G D  R     +S +GGR   G GD  RR     +   NRR R+    +
Sbjct: 224 NGRENSRDRENGRDGSREQRGDKSEDGGRGDGGRGDRSRRDDRDDEGGRNRRNRRNRNER 283

Query: 51  SR 46
            R
Sbjct: 284 GR 285

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>HSP1_ISOMA (P42136) Sperm protamine P1|
          Length = 66

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -2

Query: 222 RSNRRARADGEDAK--RTAARRRSAEGGRHLGAGDPGRRAAMAGDRSGNRRARQGPRTK 52
           R  RR+R  G DA+  R++ RRR  +G  H G           G RSG+RR ++    K
Sbjct: 17  RRGRRSRVRGRDARQGRSSRRRRRGKGRAHSG---------KKGRRSGSRRRKRNNENK 66

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>DHE3_PYRKO (O59650) Glutamate dehydrogenase (EC 1.4.1.3) (GDH)|
          Length = 420

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = +2

Query: 371 YGNSMHYSENVQSGHFAFTAVEAGDYLACFWAPDHKPPVTVTFEFDWKSGVTAKDWSNVA 550
           YGN+ +Y   + S  F    V   D     + PD  PP     ++  + G + KD     
Sbjct: 220 YGNAGYYLHKIMSEEFGMKVVAVSDSKGGIYNPDGLPPADEVLKWKKEHG-SVKDMPGTQ 278

Query: 551 KKGKVDMMELEL 586
                +++ELE+
Sbjct: 279 NITNEELLELEV 290

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>PBPC_ECOLI (P76577) Penicillin-binding protein 1C (PBP-1c) (PBP1c) [Includes:|
           Penicillin-insensitive transglycosylase (EC 2.4.2.-)
           (Peptidoglycan TGase); Transpeptidase-like module]
          Length = 770

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 538 PVLGRDAALPVELEGDGDGWLVVRRPEAGQVVPGLNSREG 419
           P  G DA LP++L G  DG ++ R P A +    L S  G
Sbjct: 682 PPYGHDAQLPLQLTGVRDGAIIKRLPGAAEATLPLQSSGG 721

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>HSP1_PERGU (P42147) Sperm protamine P1|
          Length = 68

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -2

Query: 222 RSNRRARADGEDAK--RTAARRRSAEGGRHLGAGDPGRRAAMAGDRSGNRRARQGPRTKS 49
           R   R+R  G DA+  R++ RRR  +G  H G           G RSG+RR ++   T++
Sbjct: 17  RRRGRSRVRGRDARQGRSSRRRRRGKGRAHSG---------KKGRRSGSRRRKRNNNTEN 67

Query: 48  R 46
           +
Sbjct: 68  K 68

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>CD2A2_RAT (Q8QZZ9) Cyclin-dependent kinase inhibitor 2A, isoform 2 (p19ARF)|
          Length = 160

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -2

Query: 177 TAARRRSAEGGRHLGAGDPGRRAAMAGDRSGNRRARQGPR 58
           T ARR +    RH G+  PGR AA      G+  AR GPR
Sbjct: 94  TGARRSAGGLPRHSGSTAPGRGAAGCARCLGSPAARPGPR 133

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>BCA_STRA1 (Q02192) C protein alpha-antigen precursor|
          Length = 1020

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 239  KCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVTSPYG 376
            K I+D +K+   + G  +VVG     PD  +P  H+V++ VT P G
Sbjct: 907  KEITDLVKIPDGSKGVPTVVG---DRPDTNVPGDHKVTVEVTYPDG 949



 Score = 30.8 bits (68), Expect = 3.0
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 239 KCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVTSPYG 376
           K I+D +K+   + G  +VVG     PD  +P  H+V++ VT P G
Sbjct: 825 KEITDLVKIPDGSKGVPTVVG---DRPDTNVPGDHKVTVEVTYPDG 867



 Score = 30.8 bits (68), Expect = 3.0
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 239 KCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVTSPYG 376
           K I+D +K+   + G  +VVG     PD  +P  H+V++ VT P G
Sbjct: 743 KEITDLVKIPDGSKGVPTVVG---DRPDTNVPGDHKVTVEVTYPDG 785



 Score = 30.8 bits (68), Expect = 3.0
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 239 KCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVTSPYG 376
           K I+D +K+   + G  +VVG     PD  +P  H+V++ VT P G
Sbjct: 661 KEITDLVKIPDGSKGVPTVVG---DRPDTNVPGDHKVTVEVTYPDG 703



 Score = 30.8 bits (68), Expect = 3.0
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 239 KCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVTSPYG 376
           K I+D +K+   + G  +VVG     PD  +P  H+V++ VT P G
Sbjct: 579 KEITDLVKIPDGSKGVPTVVG---DRPDTNVPGDHKVTVEVTYPDG 621



 Score = 30.8 bits (68), Expect = 3.0
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 239 KCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVTSPYG 376
           K I+D +K+   + G  +VVG     PD  +P  H+V++ VT P G
Sbjct: 497 KEITDLVKIPDGSKGVPTVVG---DRPDTNVPGDHKVTVEVTYPDG 539



 Score = 30.8 bits (68), Expect = 3.0
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 239 KCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVTSPYG 376
           K I+D +K+   + G  +VVG     PD  +P  H+V++ VT P G
Sbjct: 415 KEITDLVKIPDGSKGVPTVVG---DRPDTNVPGDHKVTVEVTYPDG 457



 Score = 30.8 bits (68), Expect = 3.0
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 239 KCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVTSPYG 376
           K I+D +K+   + G  +VVG     PD  +P  H+V++ VT P G
Sbjct: 333 KEITDLVKIPDGSKGVPTVVG---DRPDTNVPGDHKVTVEVTYPDG 375



 Score = 30.8 bits (68), Expect = 3.0
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 239 KCISDEIKVDSMAVGKYSVVGPDPSYPDAQLPDSHRVSLRVTSPYG 376
           K I+D +K+   + G  +VVG     PD  +P  H+V++ VT P G
Sbjct: 251 KEITDLVKIPDGSKGVPTVVG---DRPDTNVPGDHKVTVEVTYPDG 293

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>SMUF1_DROME (Q9V853) E3 ubiquitin-protein ligase Smurf1 (EC 6.3.2.-) (Smad|
           ubiquitination regulatory factor 1 homolog) (DSmurf)
           (Lethal with a checkpoint kinase protein)
          Length = 1061

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
 Frame = -2

Query: 231 PDSRSNRRA-RADGEDAKRTAARRRSAEGGRHLGA------GDPGRRAAMAGDRSGNRRA 73
           P  RS RR+ R  GE++   + RRRS+ G R+ G       G  G+R A A   + N+ A
Sbjct: 453 PGQRSQRRSSRQQGEES---STRRRSSRGTRNGGTSGGGGGGGSGQRYASAAIAAANQAA 509

Query: 72  R 70
           R
Sbjct: 510 R 510

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>FAD11_MYCTU (Q10776) Putative fatty-acid--CoA ligase fadD11 (EC 6.2.1.-)|
           (Acyl-CoA synthetase)
          Length = 571

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
 Frame = -2

Query: 198 DGEDAKRTAARRRSAEGGRHL--GAGDPGRRAA-----MAGDRSGNRRA 73
           DGE  +   ARRR +   RHL  G   P RRAA       GD+ G+ RA
Sbjct: 30  DGEPDRVLPARRRCSARRRHLVFGVQHPARRAADLRVRQRGDQGGHLRA 78

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>LRP1_HHV1F (P17588) Latency-related protein 1|
          Length = 340

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 25/79 (31%), Positives = 30/79 (37%)
 Frame = -2

Query: 300 PTTLYLPTAMESTLISSEMHLVWPDSRSNRRARADGEDAKRTAARRRSAEGGRHLGAGDP 121
           P TL  P    S+  +    L+ P   ++  AR  G    R         GGR    G  
Sbjct: 256 PGTLPRPPRPRSSAGAEGGFLLSPSQGTDGPARGGGSGGGRGPG------GGRGGPRGSR 309

Query: 120 GRRAAMAGDRSGNRRARQG 64
           GR     G R G RR RQG
Sbjct: 310 GRGGRGRGGRGGGRRGRQG 328

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>TMED2_RAT (Q63524) Transmembrane emp24 domain trafficking protein 2 precursor|
           (Membrane protein p24A) (RNP21.4)
          Length = 201

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
 Frame = +2

Query: 347 VSLRVTSPYGNSMHYSENVQSGHFAFTAVEAGDYLACFW-APDHKPPVTVTFEFDWKSGV 523
           + + +T P    ++  +   SG + F A   G Y  CF        P  V F  D     
Sbjct: 57  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 116

Query: 524 TAKDWSNVAKKGKVDMMELEL 586
             +D    A + K++ M  EL
Sbjct: 117 KGQDMETEAHQNKLEEMINEL 137

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>TMED2_MOUSE (Q9R0Q3) Transmembrane emp24 domain trafficking protein 2 precursor|
           (Membrane protein p24A) (Sid 394)
          Length = 201

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
 Frame = +2

Query: 347 VSLRVTSPYGNSMHYSENVQSGHFAFTAVEAGDYLACFW-APDHKPPVTVTFEFDWKSGV 523
           + + +T P    ++  +   SG + F A   G Y  CF        P  V F  D     
Sbjct: 57  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 116

Query: 524 TAKDWSNVAKKGKVDMMELEL 586
             +D    A + K++ M  EL
Sbjct: 117 KGQDMETEAHQNKLEEMINEL 137

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>TMED2_HUMAN (Q15363) Transmembrane emp24 domain trafficking protein 2 precursor|
           (Membrane protein p24A)
          Length = 201

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
 Frame = +2

Query: 347 VSLRVTSPYGNSMHYSENVQSGHFAFTAVEAGDYLACFW-APDHKPPVTVTFEFDWKSGV 523
           + + +T P    ++  +   SG + F A   G Y  CF        P  V F  D     
Sbjct: 57  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 116

Query: 524 TAKDWSNVAKKGKVDMMELEL 586
             +D    A + K++ M  EL
Sbjct: 117 KGQDMETEAHQNKLEEMINEL 137

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>LBD18_ARATH (O22131) LOB domain protein 18|
          Length = 262

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 9   PLLPHPIPVSQTPVTSSADLASLFDSRSDLRPW 107
           PL    +P S +P+ S+ DLAS+FD  +    W
Sbjct: 166 PLAITDLPASVSPLPSTYDLASIFDQTTSSSAW 198

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>ERME_SACER (P07287) rRNA adenine N-6-methyltransferase (EC 2.1.1.48)|
           (Macrolide-lincosamide-streptogramin B resistance
           protein) (Erythromycin resistance protein) (NMT)
          Length = 370

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 222 RSNRRARADGEDAKRTAARRRSAEGGRHLGAGDPG-RRAAMAGDRSGNRRARQG 64
           R +R  +A G   +R++ R R          GD G RR    G R+G R  R+G
Sbjct: 312 RDHRDRQASGHGDRRSSGRNRDDGRTGEREQGDQGGRRGPSGGGRTGGRPGRRG 365

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>TMED2_CRIGR (P49020) Transmembrane emp24 domain trafficking protein 2 precursor|
           (COPI-coated vesicle membrane protein p24) (Fragment)
          Length = 196

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
 Frame = +2

Query: 347 VSLRVTSPYGNSMHYSENVQSGHFAFTAVEAGDYLACFW-APDHKPPVTVTFEFDWKSGV 523
           + + +T P    ++  +   SG + F A   G Y  CF        P  V F  D     
Sbjct: 52  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 111

Query: 524 TAKDWSNVAKKGKVDMMELEL 586
             +D    A + K++ M  EL
Sbjct: 112 KGQDMETEAHQNKLEEMINEL 132

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>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2) (Clk4-associating SR-related
           protein)
          Length = 653

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = -2

Query: 225 SRSNRRARADGEDAKRTAARRRSAEGGR--HLGAGDPGRRAAMAGDRSGNRRARQGPRTK 52
           S S  R+R+      R+  RR S  G R  H  +  P RR      R    R+R G R K
Sbjct: 400 SWSRSRSRSRRYSRSRSRGRRHSDGGSRDGHRYSRSPARRGGYVPRRRSRSRSRSGDRYK 459

Query: 51  SRA 43
             A
Sbjct: 460 RGA 462

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>SFR15_RAT (Q63627) Splicing factor, arginine/serine-rich 15 (CTD-binding|
            SR-like protein RA4) (Fragment)
          Length = 1048

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -2

Query: 225  SRSNRRARADGEDAKRTAARRRSAEGGRHLGAGDPGRRAAMAGDRSGNRRARQGPRTKSR 46
            SRS+ R   D  + +R    RRS E  RH    +  RR++   DR  + R R+  R K  
Sbjct: 920  SRSDER---DNSNRERREWGRRSPERDRHRDLEERSRRSSGHRDRDRDSRDRESRREKEE 976

Query: 45   A 43
            +
Sbjct: 977  S 977

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>UBP19_HUMAN (O94966) Ubiquitin carboxyl-terminal hydrolase 19 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 19)
           (Ubiquitin-specific-processing protease 19)
           (Deubiquitinating enzyme 19) (Zinc finger MYND
           domain-containing protein 9) (Fragment)
          Length = 1371

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -2

Query: 222 RSNRRARADGEDAKRTAARRRSAEGGRHLGAGDPGRRAAMAGDRSGNR 79
           R+N+ ++ DG+  K T +R  +  G   L +GDP   A+ A   +G+R
Sbjct: 82  RANQESK-DGDPRKETGSRYVAQAGLEPLASGDPSASASHAAGITGSR 128

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>SCRT1_HUMAN (Q9BWW7) Transcriptional repressor scratch 1 (Scratch homolog 1|
           zinc finger protein) (Scratch 1) (SCRT) (hScrt)
          Length = 348

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
 Frame = -2

Query: 228 DSRSNRRARADGEDAKRTAARRRSAEG---------GRHLGAGDPGRRAAMAGDRSGNRR 76
           D RS R+A   G  A  + A   + +G         GR LG+G  GR    AG       
Sbjct: 121 DGRSRRKASNAGSAAAPSTASAAAPDGDAGGGGGAGGRSLGSGPGGRGGTRAG---AGTE 177

Query: 75  ARQGP 61
           AR GP
Sbjct: 178 ARAGP 182

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>ACPD_RALSO (Q8XQG9) Putative acyl carrier protein phosphodiesterase (EC|
           3.1.4.14) (ACP phosphodiesterase)
          Length = 208

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 571 HIDLALLGDVGPVLGRDAALPVELEGDGDGWLVVRRPEAGQVVPGLN 431
           H+D ++LGD        AA+  EL  D  G  V+ R  A + +P L+
Sbjct: 5   HLDSSILGDASASRILTAAIVDELRRDNPGATVIHRDLAVEAIPHLD 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,327,618
Number of Sequences: 219361
Number of extensions: 908882
Number of successful extensions: 3004
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 2898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2982
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result