>MIA40_HUMAN (Q8N4Q1) Mitochondrial intermembrane space import and assembly|
           protein 40 (Coiled-coil-helix-coiled-coil-helix
           domain-containing protein 4)
          Length = 142

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 27/51 (52%), Positives = 35/51 (68%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENP 473
           +CPC+  + +GPCG  F  AFSCF  STE  KGSDCV  F A+Q C+++ P
Sbjct: 52  NCPCLGGMASGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYP 102

>MIA40_CRYNE (Q5KGA4) Intermembrane space import and assembly protein 40,|
           mitochondrial precursor (Mitochondrial import inner
           membrane translocase TIM40)
          Length = 242

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 26/54 (48%), Positives = 35/54 (64%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENPAAF 482
           DCPC+  + TGPCG  F  AFSCF+ S    KG DCV+ F  +Q+C +E+P  +
Sbjct: 143 DCPCLGGMATGPCGEQFKAAFSCFVYSEAEPKGVDCVELFKVMQDCFREHPEIY 196

>MIA40_NEUCR (Q7S3S2) Intermembrane space import and assembly protein 40,|
           mitochondrial precursor (Mitochondrial import inner
           membrane translocase TIM40)
          Length = 298

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 25/54 (46%), Positives = 35/54 (64%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENPAAF 482
           DCPC+  +  GPCG  F  AFSCF+ STE  KG DC++ F  +Q+C ++ P  +
Sbjct: 190 DCPCLGGMAHGPCGEEFKAAFSCFVYSTEEPKGMDCIEKFSHMQDCFRKYPEVY 243

>MIA40_RAT (Q5BJN5) Mitochondrial intermembrane space import and assembly|
           protein 40 (Coiled-coil-helix-coiled-coil-helix
           domain-containing protein 4)
          Length = 139

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 26/51 (50%), Positives = 35/51 (68%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENP 473
           +CPC+  + +GPCG  F  AFSCF  STE  KGSDC+  F A+Q C+++ P
Sbjct: 52  NCPCLGGMASGPCGEQFKSAFSCFHYSTEDIKGSDCIDQFRAMQECMQKYP 102

>MIA40_MOUSE (Q8VEA4) Mitochondrial intermembrane space import and assembly|
           protein 40 (Coiled-coil-helix-coiled-coil-helix
           domain-containing protein 4)
          Length = 139

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 26/51 (50%), Positives = 35/51 (68%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENP 473
           +CPC+  + +GPCG  F  AFSCF  STE  KGSDC+  F A+Q C+++ P
Sbjct: 52  NCPCLGGMASGPCGEQFKSAFSCFHYSTEDIKGSDCIDQFRAMQECMQKYP 102

>MIA40_BRARE (Q6DEI8) Mitochondrial intermembrane space import and assembly|
           protein 40 (Coiled-coil-helix-coiled-coil-helix
           domain-containing protein 4)
          Length = 146

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 26/54 (48%), Positives = 36/54 (66%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENPAAF 482
           +CPC+  + +GPCG  F DAFSCF  S E  KGSDCV+ F  +Q C+++ P  +
Sbjct: 52  NCPCLGGMASGPCGQQFKDAFSCFHYSKEEIKGSDCVENFRGMQECMQKYPELY 105

>MIA40_ASPFU (Q4WGL2) Intermembrane space import and assembly protein 40,|
           mitochondrial precursor (Mitochondrial import inner
           membrane translocase TIM40)
          Length = 297

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 25/54 (46%), Positives = 32/54 (59%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENPAAF 482
           DCPC+  +  GPCG  F  AFSCF+ STE  KG DC+  F  +Q C +  P  +
Sbjct: 151 DCPCLGGMAHGPCGEEFKAAFSCFVYSTEEPKGMDCIDKFKGMQECFRRYPDVY 204

>MIA40_EMENI (P0C1D2) Intermembrane space import and assembly protein 40,|
           mitochondrial precursor (Mitochondrial import inner
           membrane translocase TIM40)
          Length = 283

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 25/54 (46%), Positives = 34/54 (62%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENPAAF 482
           DCPC+  +  GPCG  F  AFSCF+ S E  KG DC+  F A+Q+C + +P  +
Sbjct: 151 DCPCLGGMAYGPCGEEFRAAFSCFVYSEEEPKGMDCIDKFKAMQDCFRAHPDVY 204

>MIA40_USTMA (Q4P8D2) Intermembrane space import and assembly protein 40,|
           mitochondrial precursor (Mitochondrial import inner
           membrane translocase TIM40)
          Length = 247

 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 26/54 (48%), Positives = 34/54 (62%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENPAAF 482
           DCPC+  +  GPCG  F  AFSCF+ S    KG DCV  F A+Q+C +E+P  +
Sbjct: 148 DCPCLGGMAHGPCGEQFKLAFSCFVYSEAEPKGIDCVDKFKAMQDCFREHPDVY 201

>MIA40_GIBZE (Q4IK03) Intermembrane space import and assembly protein 40,|
           mitochondrial precursor (Mitochondrial import inner
           membrane translocase TIM40)
          Length = 391

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 25/51 (49%), Positives = 31/51 (60%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENP 473
           DCPC+  +  GPCG  F  AFSCF+ S E  KG DC+  F  +Q C K+ P
Sbjct: 151 DCPCLGGMADGPCGEEFKTAFSCFVFSQEEPKGMDCIDKFQGMQECFKKYP 201

>MIA40_DEBHA (Q6BSK8) Intermembrane space import and assembly protein 40,|
           mitochondrial precursor (Mitochondrial import inner
           membrane translocase TIM40)
          Length = 249

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 22/51 (43%), Positives = 35/51 (68%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENP 473
           DCPC+  +  GPCG  F +AF+CF+ S    KG +C++ F +++NC +E+P
Sbjct: 145 DCPCLGGMAHGPCGEEFKEAFACFIYSESEPKGIECIKKFESMRNCFREHP 195

>MI40B_XENLA (Q63ZK1) Mitochondrial intermembrane space import and assembly|
           protein 40-B (Coiled-coil-helix-coiled-coil-helix
           domain-containing protein 4-B)
          Length = 139

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 25/54 (46%), Positives = 35/54 (64%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENPAAF 482
           +CPC+  + +GPCG  F  AFSCF  S E  KGSDC+  F A+Q C+++ P  +
Sbjct: 52  NCPCLGGMASGPCGEQFKSAFSCFHYSQEEIKGSDCLDQFRAMQECMQKYPELY 105

>MIA40_BOVIN (Q2KHZ4) Mitochondrial intermembrane space import and assembly|
           protein 40 (Coiled-coil-helix-coiled-coil-helix
           domain-containing protein 4)
          Length = 137

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 26/51 (50%), Positives = 34/51 (66%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENP 473
           +CPC+  + +GPCG  F  AFSCF  S E  KGSDCV  F A+Q C+++ P
Sbjct: 52  NCPCLGGMASGPCGEQFKAAFSCFHYSKEDVKGSDCVDQFRAMQECMQKYP 102

>MIA40_XENTR (Q6PBC3) Mitochondrial intermembrane space import and assembly|
           protein 40 (Coiled-coil-helix-coiled-coil-helix
           domain-containing protein 4)
          Length = 139

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 25/51 (49%), Positives = 34/51 (66%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENP 473
           +CPC+  + +GPCG  F  AFSCF  S E  KGSDC+  F A+Q C+++ P
Sbjct: 52  NCPCLGGMASGPCGEQFKSAFSCFHYSQEEIKGSDCLDQFRAMQECMQKYP 102

>MIA40_KLULA (Q6CSA1) Intermembrane space import and assembly protein 40,|
           mitochondrial precursor (Mitochondrial import inner
           membrane translocase TIM40)
          Length = 406

 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 24/51 (47%), Positives = 32/51 (62%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENP 473
           DCPC+  +  GPCG  F  AFSCF+ S    KG +CV+ F  +QNC ++ P
Sbjct: 281 DCPCLGGMAYGPCGEEFKSAFSCFVYSEADPKGINCVEKFSTMQNCFRKYP 331

>MIA40_ASHGO (Q757A5) Intermembrane space import and assembly protein 40,|
           mitochondrial precursor (Mitochondrial import inner
           membrane translocase TIM40)
          Length = 266

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 23/51 (45%), Positives = 33/51 (64%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENP 473
           DCPC+  +  GPCG  F  AF+CF+ S    KG DCV+ F  +Q+C +++P
Sbjct: 186 DCPCLGGMAHGPCGEEFKAAFACFVYSEAEPKGIDCVEKFQVMQDCFRQHP 236

>MI40A_XENLA (Q6NU12) Mitochondrial intermembrane space import and assembly|
           protein 40-A (Coiled-coil-helix-coiled-coil-helix
           domain-containing protein 4-A)
          Length = 139

 Score = 59.3 bits (142), Expect = 7e-09
 Identities = 24/51 (47%), Positives = 33/51 (64%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENP 473
           +CPC+  + +GPCG  F  AFSCF  S E  KGSDC+  F  +Q C+++ P
Sbjct: 52  NCPCLGGMASGPCGEQFKSAFSCFHYSQEEIKGSDCLDQFRGMQECMQKYP 102

>MIA40_YEAST (P36046) Intermembrane space import and assembly protein 40,|
           mitochondrial precursor (Mitochondrial import inner
           membrane translocase TIM40)
          Length = 403

 Score = 59.3 bits (142), Expect = 7e-09
 Identities = 24/51 (47%), Positives = 32/51 (62%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENP 473
           DCPC+  +  GPCG  F  AFSCF+ S    KG DCV+ F  +Q+C ++ P
Sbjct: 295 DCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYP 345

>MIA40_CANAL (O94030) Intermembrane space import and assembly protein 40,|
           mitochondrial precursor (Mitochondrial import inner
           membrane translocase TIM40)
          Length = 252

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 23/51 (45%), Positives = 32/51 (62%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENP 473
           DCPC+  +  GPCG  F +AFSCF+ S    KG DC++ F  +++C K  P
Sbjct: 151 DCPCLGGMAHGPCGEEFKEAFSCFVFSETEPKGIDCIKKFENMRSCFKRYP 201

>MIA40_CANGA (Q6FW26) Intermembrane space import and assembly protein 40,|
           mitochondrial precursor (Mitochondrial import inner
           membrane translocase TIM40)
          Length = 404

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 24/51 (47%), Positives = 31/51 (60%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENP 473
           DCPC+  +  GPCG  F  AFSCF+ S    KG DCV+ F  +Q+C +  P
Sbjct: 290 DCPCLGGMAHGPCGEEFKAAFSCFVYSEAEPKGIDCVEKFQHMQDCFRRYP 340

>MIA40_SCHPO (P87059) Intermembrane space import and assembly protein 40,|
           mitochondrial precursor (Mitochondrial import inner
           membrane translocase TIM40)
          Length = 313

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 23/54 (42%), Positives = 33/54 (61%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPFIALQNCIKENPAAF 482
           DCPC+  +  GPCG  F  AFSCF+ S    KG +C+  F A+Q C +++P  +
Sbjct: 198 DCPCLGGMAHGPCGEEFKAAFSCFVYSKSEPKGMECLDKFQAMQACFQKHPEIY 251

>MIA40_ASPOR (Q2USJ2) Intermembrane space import and assembly protein 40,|
           mitochondrial precursor (Mitochondrial import inner
           membrane translocase TIM40)
          Length = 187

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 21/40 (52%), Positives = 26/40 (65%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRSTEVEKGSDCVQPF 440
           DCPC+  +  GPCG  F  AFSCF+ S E  KG DC++ F
Sbjct: 145 DCPCLGGMAHGPCGEEFKAAFSCFVYSEEEPKGMDCIEKF 184

>ATIN_BHV1P (P30020) Alpha trans-inducing protein (Alpha-TIF)|
          Length = 504

 Score = 33.5 bits (75), Expect = 0.43
 Identities = 15/22 (68%), Positives = 15/22 (68%)
 Frame = +2

Query: 143 RPEPARTHGGGAFSAGRRPGTV 208
           R EP  T G GAFS GRRPG V
Sbjct: 404 RGEPRHTSGSGAFSQGRRPGRV 425

>YLZ2_CAEEL (P34415) Hypothetical protein F42H10.2|
          Length = 115

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 321 DCPCVADLKTGPCGSGFVDAFSCFLRST--EVEKGSDCVQPFIALQNCI 461
           +C CV  L   PCG  F +A +C   ++  E+E+G+ C +  ++   C+
Sbjct: 54  ECHCVGHLVGSPCGFEFREAITCQKTNSDGEIEQGA-CGKELMSFMECV 101

>CID_DROME (P19538) Protein cubitus interruptus|
          Length = 1397

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 408 LLCSSGSRKMHQQIHCHKVQFSNQPHTDNPELSVP 304
           LL ++G +  HQ  H H +  + QPH  +P   +P
Sbjct: 82  LLGNAGHQHNHQPQHVHNINVTGQPHDFHPAYRIP 116

>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional|
           activator IE175) (Alpha-4 protein)
          Length = 1298

 Score = 27.7 bits (60), Expect(2) = 4.4
 Identities = 19/71 (26%), Positives = 27/71 (38%)
 Frame = -3

Query: 228 GQETATATVPGRRPAEKAPPPWVRAGSGLGPSTVG*AQQVERVQEAATLVSGDRRRSERA 49
           G  +A    PGR P    PPP               ++   + + AA   +    R ER 
Sbjct: 223 GPSSAAPAAPGRTPPPPGPPPL--------------SEAAPKPRAAARTPAASAGRIERR 268

Query: 48  RATGGVSGQVA 16
           RA   V+G+ A
Sbjct: 269 RARAAVAGRDA 279



 Score = 20.8 bits (42), Expect(2) = 4.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 370 NPLPQGPVFKSATHGQSRAFCTLTSIDSSSS 278
           +P P     +   HG+ R   + TS DS SS
Sbjct: 157 SPRPPAQPPRRRRHGRWRPSASSTSSDSGSS 187

>CEZ2_MOUSE (Q8R554) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)|
           (Zinc finger protein Cezanne 2) (OTU domain-containing
           protein 7)
          Length = 926

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = -3

Query: 219 TATATV--PGRRP-AEKAPPPWVRAGSGLGPSTVG*AQQVERVQEAATLVSGDRRRSERA 49
           TATATV  P RRP AE AP P     +  GP+     Q V +++E  +  +G   R+  A
Sbjct: 687 TATATVKRPARRPEAEGAPGP---ERASPGPTAAQPTQLVLKLKERPSPGTGASARA--A 741

Query: 48  RATGGVS 28
           RA GG +
Sbjct: 742 RAAGGAA 748

>CCBS_DAUCA (Q04647) Probable cytochrome c biosynthesis protein|
          Length = 579

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -2

Query: 487 LENAAGFSLM--QFCSAIKGCTQSDPFSTSVLLRKQENASTNPLPQGPVFKSATH 329
           ++ A G +L    F SA      SDPF  +  +R +  A +NP+PQ P+  SA H
Sbjct: 226 IDGALGIALFFSPFLSA-----SSDPFVRNFFVRTEPLAESNPVPQDPI--SAIH 273

>IF2_SYMTH (Q67P86) Translation initiation factor IF-2|
          Length = 1044

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -3

Query: 222 ETATATVPGRRPAEKAPPPWVRAGSGLGPSTVG*AQ---QVERVQEAATLVSGDRRRSER 52
           E A A    RRPAEKA P    A     P   G A     V   ++AAT  + +++ + +
Sbjct: 176 EAAQAAQAERRPAEKAQP--AAAAKAAPPEKAGAAPVPGAVAEQKQAATPAAAEQKPAGK 233

Query: 51  ARATGGVS 28
           A  T G +
Sbjct: 234 AEQTAGAA 241


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,800,063
Number of Sequences: 219361
Number of extensions: 1100427
Number of successful extensions: 3687
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3686
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)