Clone Name | bart22a07 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ234729.1|HVU234729 Hordeum vulgare genomic DNA fragment; clone MWG2037.uni Length = 328 Score = 502 bits (253), Expect = e-139 Identities = 266/269 (98%), Gaps = 1/269 (0%) Strand = Plus / Minus Query: 313 ccagggtaacatcgtgctcactgggccatcggtggccacctcggcatacagtccaattgt 372 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 269 ccagggtaacatcgtgctcactgggccatcggtggtcacctcggcatacagtccaattgt 210 Query: 373 cttcagcctcgacctccatgacggagaagccgacgaggaggaggaagagaacaccgcgag 432 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 209 cttcagcctcgacctccatgacggacaagccgacgaggaggaggaagagaacaccgcgag 150 Query: 433 gatagtctgcgacaccattggcggcgacttctctaactacaacagggccatatcggagac 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 149 gatagtctgcgacaccattggcggcgacttctctaactacaacagggccatatcggagac 90 Query: 493 tgtac-gcacaggctatggccccgcggaggtgatctacgccgtcctaagcaatggcatcc 551 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 89 tgtacggcacaggctatggccccgcggaggtgatctacgccgtcctaagcaatggcatcc 30 Query: 552 aaggccgggtcgacgtgaagctttctcgc 580 ||||||||||||||||||||||||||||| Sbjct: 29 aaggccgggtcgacgtgaagctttctcgc 1
>emb|X66376.1|HVJASIP H.vulgare mRNA for jasmonate-induced protein Length = 1892 Score = 430 bits (217), Expect = e-117 Identities = 270/285 (94%), Gaps = 2/285 (0%) Strand = Plus / Plus Query: 113 accgacgagcagctgctcgcgtacgctgagctacccagacaaggccgctacatggcggag 172 ||||||||||||||||||||||||||| | ||||||| ||| || ||||||||||||||| Sbjct: 923 accgacgagcagctgctcgcgtacgctcaactacccaaacacgggcgctacatggcggag 982 Query: 173 gtgttcgccgtgcgcatccccgccaccgccggagcagacccgcccagcggcaccatctct 232 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 983 gtgttcgccgtgcgcatccccgccaccgccggaggagacc-gcccagcggcaccatctct 1041 Query: 233 ttccacggcggccactgcagcagcgacttcatttacagcccggaagaagaacacgcctcg 292 || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1042 ttgcacggcggccactgcagcagcgacttcatttacagcccggaagaagaacacacctcg 1101 Query: 293 cagcaaaccagctgcgacagccagggtaacatcgtgctcactgggccatcgg-tggccac 351 |||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||| Sbjct: 1102 cagcaaaccagctgcgacagccagggtaacatggtcctcactgggccatcggttggccac 1161 Query: 352 ctcggcatacagtccaattgtcttcagcctcgacctccatgacgg 396 |||||||||| ||||||||||||||| ||||||||| |||||||| Sbjct: 1162 ctcggcatacggtccaattgtcttcaacctcgaccttcatgacgg 1206 Score = 186 bits (94), Expect = 6e-44 Identities = 168/192 (87%), Gaps = 3/192 (1%) Strand = Plus / Plus Query: 399 aagccgacgaggaggaggaaga---gaacaccgcgaggatagtctgcgacaccattggcg 455 ||||||||||||||||||| || |||||||| ||||||||| |||||| ||||||||| Sbjct: 1218 aagccgacgaggaggaggatgaaaagaacaccgggaggatagtgtgcgacgccattggcg 1277 Query: 456 gcgacttctctaactacaacagggccatatcggagactgtacgcacaggctatggccccg 515 |||||||||| ||||| || | ||||||||| |||||||| | |||| ||| ||||||| Sbjct: 1278 gcgacttctccaactataataaggccatatcagagactgtcctcacacgctgcggccccg 1337 Query: 516 cggaggtgatctacgccgtcctaagcaatggcatccaaggccgggtcgacgtgaagcttt 575 |||||||||||||||| || |||||||| ||| |||||||||||||||| ||||||||| Sbjct: 1338 cggaggtgatctacgcagttctaagcaacggcgtccaaggccgggtcgatgtgaagcttg 1397 Query: 576 ctcgcctgcagt 587 || ||||||||| Sbjct: 1398 ctggcctgcagt 1409
>gb|AY109619.1| Zea mays CL9605_1 mRNA sequence Length = 1251 Score = 234 bits (118), Expect = 3e-58 Identities = 180/200 (90%), Gaps = 3/200 (1%) Strand = Plus / Minus Query: 75 gcgacatggcggccgccaccggctacggtgacgccccgaccgacgagcagctgctcgcgt 134 |||||||||||||||||||||||||| | |||||||| ||||||||||| ||||| |||| Sbjct: 1045 gcgacatggcggccgccaccggctacagcgacgccccaaccgacgagcaactgctggcgt 986 Query: 135 acgctgagctacccagacaaggccgctacatggcggaggtgttcgccgtgcgcatccccg 194 |||||||||| |||| ||| |||||| ||||||||||||||||||||||||||||||||| Sbjct: 985 acgctgagctgcccaaacatggccgcgacatggcggaggtgttcgccgtgcgcatccccg 926 Query: 195 ccaccgccggagcagacccgcccagc---ggcaccatctctttccacggcggccactgca 251 |||||||||||| ||||||||| | ||||||||| ||||| |||||||||||||| Sbjct: 925 ccaccgccggaggagacccgccgccccatggcaccatcactttctacggcggccactgct 866 Query: 252 gcagcgacttcatttacagc 271 ||||||| |||||||||||| Sbjct: 865 gcagcgatttcatttacagc 846 Score = 119 bits (60), Expect = 1e-23 Identities = 129/152 (84%) Strand = Plus / Minus Query: 430 gaggatagtctgcgacaccattggcggcgacttctctaactacaacagggccatatcgga 489 ||||||| |||||||| ||| |||| ||||||||| |||||||||||||||||| || Sbjct: 666 gaggatactctgcgactgcatcggcgacgacttctccaactacaacagggccatagtcga 607 Query: 490 gactgtacgcacaggctatggccccgcggaggtgatctacgccgtcctaagcaatggcat 549 |||||| | || |||||||||||||| || |||||||| |||||||| ||||| ||| | Sbjct: 606 gactgtccaaacgggctatggccccgctgaagtgatctatgccgtcctgagcaacggcgt 547 Query: 550 ccaaggccgggtcgacgtgaagctttctcgcc 581 |||||||||||||| ||| || ||| |||||| Sbjct: 546 ccaaggccgggtcgccgtcaaacttgctcgcc 515 Score = 115 bits (58), Expect = 2e-22 Identities = 82/90 (91%) Strand = Plus / Minus Query: 304 ctgcgacagccagggtaacatcgtgctcactgggccatcggtggccacctcggcatacag 363 ||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| Sbjct: 804 ctgcgacagccagggtaacctcgtgctaactgggccatcattggccacctcggcatacag 745 Query: 364 tccaattgtcttcagcctcgacctccatga 393 |||||||| ||||| | || |||||||||| Sbjct: 744 tccaattgccttcaccttctacctccatga 715
>gb|BT017846.1| Zea mays clone EL01N0510E02.c mRNA sequence Length = 1034 Score = 145 bits (73), Expect = 2e-31 Identities = 147/171 (85%), Gaps = 3/171 (1%) Strand = Plus / Plus Query: 104 gacgccccgaccgacgagcagctgctcgcgtacgctgagctacccagacaaggccgctac 163 |||||||| || |||||||| ||||| |||||||||||||| |||| ||| |||||| || Sbjct: 2 gacgccccaactgacgagcaactgctggcgtacgctgagctgcccatacatggccgcgac 61 Query: 164 atggcggaggtgttcgccgtgcgcatccccgccaccgccggagcagacccgcc---cagc 220 || |||||||||||||||||||||||||||||||||||||| | ||||||| | | Sbjct: 62 tcggaggaggtgttcgccgtgcgcatccccgccaccgccggaggaaacccgccgcccggt 121 Query: 221 ggcaccatctctttccacggcggccactgcagcagcgacttcatttacagc 271 |||| |||| |||| |||||||||||||| ||||||| |||||||||||| Sbjct: 122 ggcagcatcgttttctacggcggccactgctgcagcgatttcatttacagc 172 Score = 109 bits (55), Expect = 1e-20 Identities = 130/155 (83%) Strand = Plus / Plus Query: 430 gaggatagtctgcgacaccattggcggcgacttctctaactacaacagggccatatcgga 489 ||||||| |||||||| ||| ||||| |||||||| |||||||||||||||||| || Sbjct: 352 gaggataatctgcgactgcatcggcggagacttctccaactacaacagggccatagtcga 411 Query: 490 gactgtacgcacaggctatggccccgcggaggtgatctacgccgtcctaagcaatggcat 549 |||||| | || ||||||||||| || || |||||||| |||||||| ||||| ||| | Sbjct: 412 gactgtccaaacgggctatggccctgctgaagtgatctatgccgtcctgagcaacggcgt 471 Query: 550 ccaaggccgggtcgacgtgaagctttctcgcctgc 584 |||||||||||||| ||| || ||| |||| |||| Sbjct: 472 ccaaggccgggtcgccgtcaaacttgctcgactgc 506 Score = 75.8 bits (38), Expect = 1e-10 Identities = 77/90 (85%) Strand = Plus / Plus Query: 304 ctgcgacagccagggtaacatcgtgctcactgggccatcggtggccacctcggcatacag 363 ||||||||||||||| ||| ||||||| ||||||||||| ||||||||||||| ||| Sbjct: 214 ctgcgacagccagggcaacctcgtgctaactgggccatcattggccacctcggccatcag 273 Query: 364 tccaattgtcttcagcctcgacctccatga 393 ||||||| | ||| |||| |||||||||| Sbjct: 274 tccaatttttttcttcctctacctccatga 303
>emb|AJ234730.1|HVU234730 Hordeum vulgare genomic DNA fragment; clone MWG2037.rev Length = 331 Score = 129 bits (65), Expect = 1e-26 Identities = 65/65 (100%) Strand = Plus / Plus Query: 253 cagcgacttcatttacagcccggaagaagaacacgcctcgcagcaaaccagctgcgacag 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cagcgacttcatttacagcccggaagaagaacacgcctcgcagcaaaccagctgcgacag 60 Query: 313 ccagg 317 ||||| Sbjct: 61 ccagg 65
>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence Length = 154441 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 162 acatggcggaggtgttcgccgtgcgc 187 ||||||||||||| |||||||||||| Sbjct: 149843 acatggcggaggtcttcgccgtgcgc 149818 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Minus Query: 80 atggcggccgccaccggctacggtgacgccccgaccg 116 |||||||| || || || ||||||||||||||||||| Sbjct: 149931 atggcggcggcgacggggtacggtgacgccccgaccg 149895 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Minus Query: 80 atggcggccgccaccggctacggtgacgccccgaccg 116 |||||||| || || || ||||||||||||||||||| Sbjct: 113242 atggcggcggcgacggggtacggtgacgccccgaccg 113206
>ref|XM_612112.2| PREDICTED: Bos taurus similar to iroquois homeobox protein 5, transcript variant 2 (LOC532896), mRNA Length = 2063 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 404 gacgaggaggaggaagagaaca 425 |||||||||||||||||||||| Sbjct: 559 gacgaggaggaggaagagaaca 580
>ref|XM_872286.1| PREDICTED: Bos taurus similar to iroquois homeobox protein 5, transcript variant 3 (LOC532896), mRNA Length = 1882 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 404 gacgaggaggaggaagagaaca 425 |||||||||||||||||||||| Sbjct: 384 gacgaggaggaggaagagaaca 405
>emb|Y14484.1|ZFOPSIN Zeus faber gene encoding opsin Length = 1065 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 391 tgacggagaagccgacgaggaggaggaaga 420 |||||| |||||||||||||| |||||||| Sbjct: 163 tgacggggaagccgacgaggatgaggaaga 134
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 162 acatggcggaggtgttcgccgtgcgc 187 ||||||||||||| |||||||||||| Sbjct: 3165142 acatggcggaggtcttcgccgtgcgc 3165167 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 80 atggcggccgccaccggctacggtgacgccccgaccg 116 |||||||| || || || ||||||||||||||||||| Sbjct: 3201743 atggcggcggcgacggggtacggtgacgccccgaccg 3201779 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 80 atggcggccgccaccggctacggtgacgccccgaccg 116 |||||||| || || || ||||||||||||||||||| Sbjct: 3165054 atggcggcggcgacggggtacggtgacgccccgaccg 3165090
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 380 ctcgacctccatgacggagaagccga 405 ||||||||||||| |||||||||||| Sbjct: 3492121 ctcgacctccatgccggagaagccga 3492146 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 cggaggtgatctacgccgtc 535 |||||||||||||||||||| Sbjct: 8688449 cggaggtgatctacgccgtc 8688430
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 162 acatggcggaggtgttcgccgtgcgc 187 ||||||||||||| |||||||||||| Sbjct: 3173847 acatggcggaggtcttcgccgtgcgc 3173872 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 80 atggcggccgccaccggctacggtgacgccccgaccg 116 |||||||| || || || ||||||||||||||||||| Sbjct: 3210448 atggcggcggcgacggggtacggtgacgccccgaccg 3210484 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 80 atggcggccgccaccggctacggtgacgccccgaccg 116 |||||||| || || || ||||||||||||||||||| Sbjct: 3173759 atggcggcggcgacggggtacggtgacgccccgaccg 3173795
>ref|XM_480123.1| Oryza sativa (japonica cultivar-group), mRNA Length = 678 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 403 cgacgaggaggaggaagagaa 423 ||||||||||||||||||||| Sbjct: 519 cgacgaggaggaggaagagaa 539
>gb|AY353563.1| Anopheles gambiae relish mRNA, complete cds Length = 3753 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 397 agaagccgacgaggaggaggaagag 421 ||||| ||||||||||||||||||| Sbjct: 3056 agaagacgacgaggaggaggaagag 3080
>emb|AL133544.6| Human DNA sequence from clone RP1-71N10 on chromosome 6 Contains the 5' end of a gene for a novel protein, the 5' end of a novel gene and a CpG island, complete sequence Length = 112085 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 407 gaggaggaggaagagaacacc 427 ||||||||||||||||||||| Sbjct: 82635 gaggaggaggaagagaacacc 82615
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16 Length = 347137 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 178 cgccgtgcgcatccccgccaccgcc 202 |||||||| |||||||||||||||| Sbjct: 211639 cgccgtgcccatccccgccaccgcc 211663
>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14 Length = 349305 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 178 cgccgtgcgcatccccgccaccgcc 202 |||||||| |||||||||||||||| Sbjct: 148129 cgccgtgcccatccccgccaccgcc 148153
>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12 Length = 349028 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 cgccgtgcgcatccccgccaccgcc 202 |||||||| |||||||||||||||| Sbjct: 205914 cgccgtgcccatccccgccaccgcc 205890
>emb|AJ251174.1|FCA251174 Felis catus partial aar2B gene for alpha adrenergic receptor 2B Length = 1162 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 397 agaagccgacgaggaggaggaagag 421 ||||||||| ||||||||||||||| Sbjct: 841 agaagccgaggaggaggaggaagag 865
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 403 cgacgaggaggaggaagagaa 423 ||||||||||||||||||||| Sbjct: 2962177 cgacgaggaggaggaagagaa 2962157 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 gccgacgaggaggaggaagag 421 ||||||||||||||||||||| Sbjct: 958543 gccgacgaggaggaggaagag 958523
>dbj|AP004562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470F10 Length = 185294 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 gccgacgaggaggaggaagag 421 ||||||||||||||||||||| Sbjct: 121281 gccgacgaggaggaggaagag 121261
>dbj|AP004461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0443G08 Length = 162139 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 403 cgacgaggaggaggaagagaa 423 ||||||||||||||||||||| Sbjct: 135239 cgacgaggaggaggaagagaa 135219
>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1349_D05 Length = 174478 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 403 cgacgaggaggaggaagagaa 423 ||||||||||||||||||||| Sbjct: 12900 cgacgaggaggaggaagagaa 12880
>gb|AC009399.5|AC009399 Homo sapiens chromosome 14 clone RP11-368K8 containing KIAA0998 gene, partial cds, complete sequence Length = 185964 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 399 aagccgacgaggaggaggaagagaa 423 ||||||| ||||||||||||||||| Sbjct: 153872 aagccgaggaggaggaggaagagaa 153848
>gb|AF107885.2|DJ270M14 Homo sapiens chromosome 14q24.3 clone BAC270M14 transforming growth factor-beta 3 (TGF-beta 3) gene, complete cds; and unknown genes Length = 192126 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 399 aagccgacgaggaggaggaagagaa 423 ||||||| ||||||||||||||||| Sbjct: 10815 aagccgaggaggaggaggaagagaa 10791
>gb|AF115498.2| Xenopus laevis Smad1 antagonistic effector (SANE) mRNA, complete cds Length = 2397 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 agaagccgacgaggaggaggaaga 420 ||||| |||||||||||||||||| Sbjct: 522 agaagacgacgaggaggaggaaga 545
>ref|XM_632084.1| Dictyostelium discoideum hypothetical protein (DDB0187516), partial mRNA Length = 2955 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 agaagccgacgaggaggaggaaga 420 ||||| |||||||||||||||||| Sbjct: 1398 agaagacgacgaggaggaggaaga 1421
>ref|NM_019741.2| Mus musculus solute carrier family 2 (facilitated glucose transporter), member 5 (Slc2a5), mRNA Length = 3097 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 ggagaagccgacgaggaggaggaa 418 |||||||||||||||||| ||||| Sbjct: 1701 ggagaagccgacgaggagtaggaa 1678
>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence Length = 2205233 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 ctgcagcagcgacttcattt 266 |||||||||||||||||||| Sbjct: 2108968 ctgcagcagcgacttcattt 2108987
>gb|AC159702.1| Trypanosoma brucei chromosome 7 clone RPCI93-30D13, complete sequence Length = 171752 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 ctgcagcagcgacttcattt 266 |||||||||||||||||||| Sbjct: 96266 ctgcagcagcgacttcattt 96247
>gb|AY389747.1| Hyacinthus orientalis heat shock protein 82 mRNA, partial cds Length = 868 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gacgaggaggaggaagagaa 423 |||||||||||||||||||| Sbjct: 619 gacgaggaggaggaagagaa 638
>ref|NM_174190.2| Bos taurus supervillin (SVIL), mRNA Length = 6461 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 gaggaggaggaagagaacac 426 |||||||||||||||||||| Sbjct: 4544 gaggaggaggaagagaacac 4563
>gb|BC023500.1| Mus musculus solute carrier family 2 (facilitated glucose transporter), member 5, mRNA (cDNA clone MGC:32452 IMAGE:5043284), complete cds Length = 2080 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 ggagaagccgacgaggaggaggaa 418 |||||||||||||||||| ||||| Sbjct: 1076 ggagaagccgacgaggagtaggaa 1053
>gb|AC165253.2| Mus musculus BAC clone RP23-413P10 from chromosome 9, complete sequence Length = 200549 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 cagccagggtaacatcgtgc 329 |||||||||||||||||||| Sbjct: 159390 cagccagggtaacatcgtgc 159371
>gb|AC126426.3| Mus musculus BAC clone RP24-291G13 from chromosome 13, complete sequence Length = 201051 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gacgaggaggaggaagagaa 423 |||||||||||||||||||| Sbjct: 79663 gacgaggaggaggaagagaa 79644
>ref|XM_820996.1| Trypanosoma brucei TREU927 clone RPCI93-30D13 ATP-dependent DEAD/H RNA helicase (Tb927.7.7300) partial mRNA Length = 3051 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 ctgcagcagcgacttcattt 266 |||||||||||||||||||| Sbjct: 1284 ctgcagcagcgacttcattt 1265
>gb|AC055873.8| Homo sapiens chromosome 15, clone RP11-339F1, complete sequence Length = 194765 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gacgaggaggaggaagagaa 423 |||||||||||||||||||| Sbjct: 125946 gacgaggaggaggaagagaa 125927
>ref|XM_801388.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508727.60) partial mRNA Length = 972 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gcggcaccatctctttccac 238 |||||||||||||||||||| Sbjct: 202 gcggcaccatctctttccac 221
>ref|XM_809739.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506355.160) partial mRNA Length = 972 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gcggcaccatctctttccac 238 |||||||||||||||||||| Sbjct: 202 gcggcaccatctctttccac 221
>gb|AC107842.13| Mus musculus chromosome 1, clone RP23-304O9, complete sequence Length = 215781 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gacgaggaggaggaagagaa 423 |||||||||||||||||||| Sbjct: 208889 gacgaggaggaggaagagaa 208870
>gb|AE004409.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, section 66 of 93 of the complete chromosome Length = 12236 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 tctgcgacaccattggcggc 457 |||||||||||||||||||| Sbjct: 6783 tctgcgacaccattggcggc 6802
>ref|XM_536286.2| PREDICTED: Canis familiaris similar to erythrocyte protein band 4.1-like 4 (LOC479140), mRNA Length = 1752 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 agccgacgaggaggaggaag 419 |||||||||||||||||||| Sbjct: 1487 agccgacgaggaggaggaag 1506
>gb|BT009981.1| Drosophila melanogaster RE54443 full insert cDNA Length = 6903 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ccgacgaggaggaggaagag 421 |||||||||||||||||||| Sbjct: 1674 ccgacgaggaggaggaagag 1693
>gb|AC102542.8| Mus musculus, clone RP23-110O23, complete sequence Length = 270695 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gacgaggaggaggaagagaa 423 |||||||||||||||||||| Sbjct: 124375 gacgaggaggaggaagagaa 124356
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 ccgtgcgcatccccgccacc 199 |||||||||||||||||||| Sbjct: 158447 ccgtgcgcatccccgccacc 158466
>gb|DQ096949.1| Xenopus laevis comp52 mRNA, complete sequence Length = 682 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gacgaggaggaggaagagaa 423 |||||||||||||||||||| Sbjct: 94 gacgaggaggaggaagagaa 113
>gb|AC158577.5| Mus musculus chromosome 1, clone RP24-187D4, complete sequence Length = 155742 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gacgaggaggaggaagagaa 423 |||||||||||||||||||| Sbjct: 40322 gacgaggaggaggaagagaa 40303
>gb|AC023692.5| Drosophila melanogaster X BAC RP98-15B10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163090 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ccgacgaggaggaggaagag 421 |||||||||||||||||||| Sbjct: 151025 ccgacgaggaggaggaagag 151044
>gb|AC023686.4| Drosophila melanogaster X BAC RP98-30C1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170626 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 ccgacgaggaggaggaagag 421 |||||||||||||||||||| Sbjct: 144304 ccgacgaggaggaggaagag 144285
>ref|NM_206628.1| Drosophila melanogaster CG32767-RB, transcript variant B (CG32767), mRNA Length = 7540 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ccgacgaggaggaggaagag 421 |||||||||||||||||||| Sbjct: 1967 ccgacgaggaggaggaagag 1986
>ref|NM_131975.3| Drosophila melanogaster CG32767-RA, transcript variant A (CG32767), mRNA Length = 7670 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ccgacgaggaggaggaagag 421 |||||||||||||||||||| Sbjct: 2097 ccgacgaggaggaggaagag 2116
>ref|XM_681690.1| PREDICTED: Danio rerio similar to Inner nuclear membrane protein Man1 (LEM domain containing protein 3) (LOC558474), mRNA Length = 2584 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ccgacgaggaggaggaagag 421 |||||||||||||||||||| Sbjct: 635 ccgacgaggaggaggaagag 654
>dbj|AK029720.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930505E07 product:solute carrier family 2 (facilitated glucose transporter), member 5, full insert sequence Length = 3097 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 ggagaagccgacgaggaggaggaa 418 |||||||||||||||||| ||||| Sbjct: 1701 ggagaagccgacgaggagtaggaa 1678
>gb|AC154636.2| Mus musculus BAC clone RP23-302E1 from chromosome 12, complete sequence Length = 179631 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gacgaggaggaggaagagaa 423 |||||||||||||||||||| Sbjct: 26618 gacgaggaggaggaagagaa 26599
>gb|AF339161.1|AF339161 Tupaia glis mannose-6-phosphate/insulin-like growth factor II receptor (m6p/igf2r) mRNA, partial cds Length = 7274 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 107 gccccgaccgacgagcagctgctc 130 |||| ||||||||||||||||||| Sbjct: 5254 gccctgaccgacgagcagctgctc 5277
>gb|BT022159.1| Drosophila melanogaster IP01381 full insert cDNA Length = 5378 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ccgacgaggaggaggaagag 421 |||||||||||||||||||| Sbjct: 1623 ccgacgaggaggaggaagag 1642
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 gaagccgacgaggaggagga 417 |||||||||||||||||||| Sbjct: 19693921 gaagccgacgaggaggagga 19693940
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gacgaggaggaggaagagaa 423 |||||||||||||||||||| Sbjct: 14188426 gacgaggaggaggaagagaa 14188445
>gb|AC154502.2| Mus musculus BAC clone RP24-87I20 from chromosome 13, complete sequence Length = 183319 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gacgaggaggaggaagagaa 423 |||||||||||||||||||| Sbjct: 130044 gacgaggaggaggaagagaa 130025
>dbj|AK203162.1| Mus musculus cDNA, clone:Y1G0144A02, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000030826, based on BLAT search Length = 212 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 ggagaagccgacgaggaggaggaa 418 |||||||||||||||||| ||||| Sbjct: 112 ggagaagccgacgaggagtaggaa 89
>dbj|D84215.1| Vibrio cholerae lap gene for aminopeptidase, complete cds Length = 3587 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 tctgcgacaccattggcggc 457 |||||||||||||||||||| Sbjct: 1135 tctgcgacaccattggcggc 1154
>dbj|AP004992.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0022O02 Length = 176625 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gacgaggaggaggaagagaa 423 |||||||||||||||||||| Sbjct: 31890 gacgaggaggaggaagagaa 31909
>emb|AL606971.22| Mouse DNA sequence from clone RP23-123I20 on chromosome 4, complete sequence Length = 91841 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 ggagaagccgacgaggaggaggaa 418 |||||||||||||||||| ||||| Sbjct: 52610 ggagaagccgacgaggagtaggaa 52587
>dbj|AK111123.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-C04, full insert sequence Length = 692 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 gaagccgacgaggaggagga 417 |||||||||||||||||||| Sbjct: 259 gaagccgacgaggaggagga 240
>gb|AC154401.2| Mus musculus BAC clone RP23-166O7 from 13, complete sequence Length = 199694 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gacgaggaggaggaagagaa 423 |||||||||||||||||||| Sbjct: 175986 gacgaggaggaggaagagaa 175967
>emb|BX119963.5| Zebrafish DNA sequence from clone DKEY-6A5 in linkage group 4, complete sequence Length = 229125 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ccgacgaggaggaggaagag 421 |||||||||||||||||||| Sbjct: 132187 ccgacgaggaggaggaagag 132206
>dbj|AK059519.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-C04, full insert sequence Length = 1242 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 gaagccgacgaggaggagga 417 |||||||||||||||||||| Sbjct: 94 gaagccgacgaggaggagga 113
>emb|AL450341.10| Mouse DNA sequence from clone RP23-401L17 on chromosome 2, complete sequence Length = 214573 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gacgaggaggaggaagagaa 423 |||||||||||||||||||| Sbjct: 138456 gacgaggaggaggaagagaa 138437
>gb|AF161071.1|AF161071 Mus musculus fructose transporter GLUT5 mRNA, complete cds Length = 2069 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 ggagaagccgacgaggaggaggaa 418 |||||||||||||||||| ||||| Sbjct: 1061 ggagaagccgacgaggagtaggaa 1038
>gb|AE003433.3| Drosophila melanogaster chromosome X, section 17 of 74 of the complete sequence Length = 303602 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 ccgacgaggaggaggaagag 421 |||||||||||||||||||| Sbjct: 60624 ccgacgaggaggaggaagag 60605
>gb|AF025996.1|AF025996 Bos taurus supervillin mRNA, complete cds Length = 6461 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 gaggaggaggaagagaacac 426 |||||||||||||||||||| Sbjct: 4544 gaggaggaggaagagaacac 4563
>emb|CT572990.6| Mouse DNA sequence from clone RP24-393N9 on chromosome 12, complete sequence Length = 90243 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gacgaggaggaggaagagaa 423 |||||||||||||||||||| Sbjct: 61631 gacgaggaggaggaagagaa 61650
>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07, complete sequence Length = 166410 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 gaagccgacgaggaggagga 417 |||||||||||||||||||| Sbjct: 144647 gaagccgacgaggaggagga 144666
>gb|AC135083.4| Mus musculus BAC clone RP24-238A21 from 14, complete sequence Length = 179469 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gacgaggaggaggaagagaa 423 |||||||||||||||||||| Sbjct: 124713 gacgaggaggaggaagagaa 124732
>gb|AC146617.3| Mus musculus BAC clone RP23-14M15 from 14, complete sequence Length = 221015 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gacgaggaggaggaagagaa 423 |||||||||||||||||||| Sbjct: 94954 gacgaggaggaggaagagaa 94973
>emb|AL928924.12| Mouse DNA sequence from clone RP23-307E15 on chromosome 2, complete sequence Length = 195936 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gacgaggaggaggaagagaa 423 |||||||||||||||||||| Sbjct: 56324 gacgaggaggaggaagagaa 56343 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,785,627 Number of Sequences: 3902068 Number of extensions: 4785627 Number of successful extensions: 158342 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 157628 Number of HSP's gapped (non-prelim): 710 length of query: 587 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 564 effective length of database: 17,143,297,704 effective search space: 9668819905056 effective search space used: 9668819905056 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)