ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart22a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RCEL_RHOSH (P0C0Y8) Reaction center protein L chain (Photosynthe... 30 6.7
2RCEL_RHOS4 (Q3J1A5) Reaction center protein L chain (Photosynthe... 30 6.7

>RCEL_RHOSH (P0C0Y8) Reaction center protein L chain (Photosynthetic reaction|
           center L subunit)
          Length = 281

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 581 WWRWWKRMPW 552
           WW+WW ++PW
Sbjct: 262 WWQWWVKLPW 271



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>RCEL_RHOS4 (Q3J1A5) Reaction center protein L chain (Photosynthetic reaction|
           center L subunit)
          Length = 281

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 581 WWRWWKRMPW 552
           WW+WW ++PW
Sbjct: 262 WWQWWVKLPW 271


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,139,402
Number of Sequences: 219361
Number of extensions: 784834
Number of successful extensions: 2033
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2033
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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