ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart22a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY442346.1| Homo sapiens insulin-like growth factor binding p... 36 8.8
2emb|CR847503.8| Zebrafish DNA sequence from clone DKEY-20D21 in ... 36 8.8
3gb|AC018629.12| Homo sapiens chromosome 17, clone RP11-58O9, com... 36 8.8
4gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc... 36 8.8
5gb|AF236884.1|AF236884 Homo sapiens clone c13 chromosome 20, tel... 36 8.8
6gb|AY135687.1| Mus musculus argonaute 1 protein (Ago1) gene, par... 36 8.8
7emb|AL606935.8| Mouse DNA sequence from clone RP23-204N19 on chr... 36 8.8
8emb|X04873.1|PPTEL03 Paramecium primaurelia macronuclear DNA tel... 36 8.8
9emb|Y12508.1|HSIGFBP H.sapiens IGFBP-4 gene 36 8.8

>gb|AY442346.1| Homo sapiens insulin-like growth factor binding protein 4 (IGFBP4)
             gene, complete cds
          Length = 16904

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     aaccccaacccaacccct 19
             ||||||||||||||||||
Sbjct: 11429 aaccccaacccaacccct 11446



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>emb|CR847503.8| Zebrafish DNA sequence from clone DKEY-20D21 in linkage group 8, complete
              sequence
          Length = 217514

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      aaaccccaacccaacccc 18
              ||||||||||||||||||
Sbjct: 152321 aaaccccaacccaacccc 152304



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>gb|AC018629.12| Homo sapiens chromosome 17, clone RP11-58O9, complete sequence
          Length = 166234

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 2      aaccccaacccaacccct 19
              ||||||||||||||||||
Sbjct: 109237 aaccccaacccaacccct 109254



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>gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete
             sequence
          Length = 120132

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 1     aaaccccaacccaacccc 18
             ||||||||||||||||||
Sbjct: 80811 aaaccccaacccaacccc 80794



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>gb|AF236884.1|AF236884 Homo sapiens clone c13 chromosome 20, telomeric repeat region
          Length = 1396

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 2   aaccccaacccaacccct 19
           ||||||||||||||||||
Sbjct: 369 aaccccaacccaacccct 352



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>gb|AY135687.1| Mus musculus argonaute 1 protein (Ago1) gene, partial cds
          Length = 64211

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 2     aaccccaacccaacccct 19
             ||||||||||||||||||
Sbjct: 30476 aaccccaacccaacccct 30459



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>emb|AL606935.8| Mouse DNA sequence from clone RP23-204N19 on chromosome 4, complete
            sequence
          Length = 213391

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 2    aaccccaacccaacccct 19
            ||||||||||||||||||
Sbjct: 2975 aaccccaacccaacccct 2992



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>emb|X04873.1|PPTEL03 Paramecium primaurelia macronuclear DNA telomeric region (EBGJ3)
          Length = 502

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   aaaccccaacccaacccc 18
           ||||||||||||||||||
Sbjct: 362 aaaccccaacccaacccc 379



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>emb|Y12508.1|HSIGFBP H.sapiens IGFBP-4 gene
          Length = 21619

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     aaccccaacccaacccct 19
             ||||||||||||||||||
Sbjct: 14589 aaccccaacccaacccct 14606


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 91,521
Number of Sequences: 3902068
Number of extensions: 91521
Number of successful extensions: 9557
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9543
Number of HSP's gapped (non-prelim): 14
length of query: 61
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 40
effective length of database: 17,151,101,840
effective search space: 686044073600
effective search space used: 686044073600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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