ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart21g08 |
|---|---|
| Clone Library Name | barley_pub |
>NHL1_CAEEL (Q03601) RING finger protein nhl-1| Length = 974 Score = 36.2 bits (82), Expect = 0.075 Identities = 17/33 (51%), Positives = 22/33 (66%) Frame = +1 Query: 499 GHIDGKPIDARFKRPTGVAVDDTGNVYIADTAN 597 GH G +A+F P GVAVDD G++Y+AD N Sbjct: 797 GHGQG---NAKFNNPWGVAVDDLGSIYVADKDN 826
>TRIM3_RAT (O70277) Tripartite motif protein 3 (RING finger protein 22)| (Brain-expressed RING finger protein) Length = 744 Score = 33.1 bits (74), Expect = 0.64 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +1 Query: 523 DARFKRPTGVAVDDTGNVYIADTAN 597 + +F PTGVAVD GN+ +AD N Sbjct: 666 NGQFNAPTGVAVDSNGNIIVADWGN 690 Score = 32.3 bits (72), Expect = 1.1 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 14/66 (21%) Frame = +1 Query: 442 PLSEYSRGRLVA--------------GSFQGHAGHIDGKPIDARFKRPTGVAVDDTGNVY 579 PLS S GR+V G F+ G P + +RPTGVAVD G++ Sbjct: 491 PLSAASSGRIVVADSNNQCIQVFSNEGQFKFRFGVRGRSP--GQLQRPTGVAVDTNGDII 548 Query: 580 IADTAN 597 +AD N Sbjct: 549 VADYDN 554
>TRIM3_MOUSE (Q9R1R2) Tripartite motif protein 3 (RING finger protein 22) (RING| finger protein HAC1) Length = 744 Score = 33.1 bits (74), Expect = 0.64 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +1 Query: 523 DARFKRPTGVAVDDTGNVYIADTAN 597 + +F PTGVAVD GN+ +AD N Sbjct: 666 NGQFNAPTGVAVDSNGNIIVADWGN 690 Score = 30.0 bits (66), Expect = 5.4 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = +1 Query: 529 RFKRPTGVAVDDTGNVYIADTAN 597 + +RPTGVAVD G++ +AD N Sbjct: 532 QLQRPTGVAVDTNGDIIVADYDN 554
>TRIM3_HUMAN (O75382) Tripartite motif protein 3 (RING finger protein 22)| (Brain-expressed RING finger protein) (RING finger protein 97) Length = 744 Score = 33.1 bits (74), Expect = 0.64 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +1 Query: 523 DARFKRPTGVAVDDTGNVYIADTAN 597 + +F PTGVAVD GN+ +AD N Sbjct: 666 NGQFNAPTGVAVDSNGNIIVADWGN 690 Score = 30.0 bits (66), Expect = 5.4 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = +1 Query: 529 RFKRPTGVAVDDTGNVYIADTAN 597 + +RPTGVAVD G++ +AD N Sbjct: 532 QLQRPTGVAVDTNGDIIVADYDN 554
>TRIM2_MOUSE (Q9ESN6) Tripartite motif protein 2 (Neural activity-related RING| finger protein) Length = 744 Score = 33.1 bits (74), Expect = 0.64 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +1 Query: 523 DARFKRPTGVAVDDTGNVYIADTAN 597 + +F PTGVAVD GN+ +AD N Sbjct: 666 NGQFNAPTGVAVDSNGNIIVADWGN 690
>TRIM2_HUMAN (Q9C040) Tripartite motif protein 2 (RING finger protein 86)| Length = 744 Score = 33.1 bits (74), Expect = 0.64 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +1 Query: 523 DARFKRPTGVAVDDTGNVYIADTAN 597 + +F PTGVAVD GN+ +AD N Sbjct: 666 NGQFNAPTGVAVDSNGNIIVADWGN 690
>BRAT_DROME (Q8MQJ9) Brain tumor protein| Length = 1037 Score = 32.7 bits (73), Expect = 0.83 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = +1 Query: 433 ITPPLSEYSRGRLVAGSFQGHAGHIDGKPIDARFKRPTGVAVDDTGNVYIADTAN 597 I PP S+ R +++ G G ++G+ F P+GVAV+ ++ +ADT N Sbjct: 752 IYPPKSQIKRQKMIYHCKFGEFGVMEGQ-----FTEPSGVAVNAQNDIIVADTNN 801
>PKND_MYCTU (O05871) Serine/threonine-protein kinase pknD (EC 2.7.11.1)| Length = 664 Score = 32.7 bits (73), Expect = 0.83 Identities = 13/19 (68%), Positives = 16/19 (84%) Frame = +1 Query: 541 PTGVAVDDTGNVYIADTAN 597 P GVAVD++GNVY+ DT N Sbjct: 554 PDGVAVDNSGNVYVTDTDN 572
>NCL1_CAEEL (P34611) B-box type zinc-finger protein ncl-1| Length = 851 Score = 31.6 bits (70), Expect = 1.8 Identities = 17/53 (32%), Positives = 29/53 (54%) Frame = +1 Query: 439 PPLSEYSRGRLVAGSFQGHAGHIDGKPIDARFKRPTGVAVDDTGNVYIADTAN 597 P S+ R +++ G G ++G+ F P+GVAV+ G++ +ADT N Sbjct: 560 PSRSQIKRQKMIYHCKFGEFGVMEGQ-----FTEPSGVAVNGQGDIVVADTNN 607
>TPIS_CORGL (P19583) Triosephosphate isomerase (EC 5.3.1.1) (TIM)| (Triose-phosphate isomerase) Length = 259 Score = 30.4 bits (67), Expect = 4.1 Identities = 20/38 (52%), Positives = 21/38 (55%) Frame = +1 Query: 277 DGNVAVQFESGYFVETLVEGDKLGVTPHTIRVSQVEGG 390 D V V F V+TLVEGDKL VT VSQ E G Sbjct: 40 DVAVTVPFTDIRSVQTLVEGDKLEVTFGAQDVSQHESG 77
>GRB7_MOUSE (Q03160) Growth factor receptor-bound protein 7 (GRB7 adapter| protein) (Epidermal growth factor receptor GRB-7) Length = 535 Score = 30.0 bits (66), Expect = 5.4 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +1 Query: 436 TPPLSEYSRGRLVAGSFQGHAGHIDGKPIDA 528 +PPL S LVA F GHAG + P +A Sbjct: 364 SPPLRSVSDNTLVAMDFSGHAGRVIDNPREA 394
>TPIS_COREF (Q8FT67) Triosephosphate isomerase (EC 5.3.1.1) (TIM)| (Triose-phosphate isomerase) Length = 262 Score = 30.0 bits (66), Expect = 5.4 Identities = 19/38 (50%), Positives = 21/38 (55%) Frame = +1 Query: 277 DGNVAVQFESGYFVETLVEGDKLGVTPHTIRVSQVEGG 390 D V V F V+TLVEGDKL +T VSQ E G Sbjct: 43 DVAVIVPFTDLRSVQTLVEGDKLQITYGAQDVSQHESG 80
>SYA_SYNPX (Q7U3R9) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 889 Score = 29.3 bits (64), Expect = 9.2 Identities = 16/57 (28%), Positives = 28/57 (49%) Frame = +1 Query: 292 VQFESGYFVETLVEGDKLGVTPHTIRVSQVEGGELLAVDSTHSNIVRITPPLSEYSR 462 +Q E F+ETL G+KL R +Q+ G + + T+ + +T ++E R Sbjct: 361 LQREEARFLETLERGEKLLAEVLASRPTQISGAQAFELYDTYGFPLELTQEIAEEQR 417
>GRB7_HUMAN (Q14451) Growth factor receptor-bound protein 7 (GRB7 adapter| protein) (Epidermal growth factor receptor GRB-7) (B47) Length = 532 Score = 29.3 bits (64), Expect = 9.2 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +1 Query: 436 TPPLSEYSRGRLVAGSFQGHAGHIDGKPIDA 528 +PPL S LVA F GHAG + P +A Sbjct: 361 SPPLRSASDNTLVAMDFSGHAGRVIENPREA 391 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,069,711 Number of Sequences: 219361 Number of extensions: 1455592 Number of successful extensions: 3019 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2955 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3017 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
