>PRA_MYCTU (O53426) Proline-rich antigen homolog|
          Length = 240

 Score = 33.9 bits (76), Expect = 0.34
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -2

Query: 140 PGPAGGFDPRAYAVDAMEDH---PPPDTRHGHDPRPIPPAG 27
           PGP+GG +P   A      +   PPP +  G+ P P PP G
Sbjct: 18  PGPSGGHEPPPAAPPGGSGYAPPPPPSSGSGYPPPPPPPGG 58

>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 143 SPGPAGGFDPRAYAVDAMEDHPPPDTRHGHDPRPIPPAGQR 21
           +P PA    P A  ++  ++HPP   R G +  P PP GQ+
Sbjct: 603 APPPAQQLPPSATTLEPEKNHPPAADRAGTEISPSPPFGQQ 643

>XRN2_HUMAN (Q9H0D6) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (DHM1-like protein)|
           (DHP protein)
          Length = 950

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
 Frame = -2

Query: 284 KTGE*MAKRRAKEM*VRRARQQPATSPIPSFLGSILLSSLASRGCLRSPGPAGGFDPR-- 111
           K  E   +RR KE   R  R QPA +P     G +   +L SR    SPG     +PR  
Sbjct: 408 KDDEDSFRRRQKEKRKRMKRDQPAFTP----SGILTPHALGSR---NSPGSQVASNPRQA 460

Query: 110 AYAVDAMEDHPP---PDTRHGHDPRPIPPAGQRKR 15
           AY +    +  P   P+T    D  P P  G +++
Sbjct: 461 AYEMRMQNNSSPSISPNTSFTSDGSPSPLGGIKRK 495

>XRN2_MOUSE (Q9DBR1) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (Protein Dhm1)|
          Length = 951

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
 Frame = -2

Query: 284 KTGE*MAKRRAKEM*VRRARQQPATSPIPSFLGSILLSSLASRGCLRSPGPAGGFDPR-- 111
           K  E   +RR KE   R  R QPA +P     G +   +L SR    SPG     +PR  
Sbjct: 408 KDDEDSFRRRQKEKRKRMKRDQPAFTP----SGILTPHALGSR---NSPGCQVASNPRQA 460

Query: 110 AYAVDAMEDHPP---PDTRHGHDPRPIPPAGQRKR 15
           AY +    +  P   P+T    D  P P  G +++
Sbjct: 461 AYEMRMQRNSSPSISPNTSFASDGSPSPLGGIKRK 495

>YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6|
          Length = 278

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = -2

Query: 161 SRGCLRSPGPAGGFDPRAYAVDAMEDHPPPDTRHGHDPRPIPPA 30
           S G   +PGPAG   P           P PD   GHD +P P A
Sbjct: 224 SAGAPGAPGPAGA--PGVDGQPGANGQPGPDGEQGHDGQPGPDA 265

>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 158  RGCLRSPGPAGGFDPRAYAVDAMEDHPPP--DTRHGHDPRPIPPAGQRKRRNK 6
            +G + SPGPAG   P       +  H PP  D   GH P PI P G R  R +
Sbjct: 1126 QGAIGSPGPAGPRGP-------VGPHGPPGKDGTSGH-PGPIGPPGPRGNRGE 1170

>IF2_BDEBA (Q6MMS6) Translation initiation factor IF-2|
          Length = 975

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -2

Query: 218 PATSPIPSFLGSILLSSLASRGCLRSPG--PAGGFDPRA 108
           PA++P  + +G + LS + S+   R  G  PAGGF PRA
Sbjct: 221 PASAPKRNIIGRMDLSRVQSQAPQRPQGERPAGGFTPRA 259

>PSBC_ANTFO (Q85AU0) Photosystem II 44 kDa reaction center protein (P6 protein)|
           (CP43)
          Length = 473

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 13/59 (22%)
 Frame = -1

Query: 573 LVAGHLGLGLFCFIATVW--------FGYRGLLXFGAFCLRWGLRL-----FIDLCFLW 436
           ++ GH+ LGL C +  +W        +  R L+  G   L + L       FI  CF+W
Sbjct: 233 IIGGHVWLGLICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAISVFGFIACCFVW 291

>CT075_MOUSE (P59383) Protein C20orf75 homolog precursor|
          Length = 733

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 505 SPLXRCFLSPLGSPPFHRSLFLVESRAPSAPRRLHPD 395
           +PL   +L PL + P  RSL   + R  + PR LH D
Sbjct: 475 TPLVSKYLEPLPTSPNPRSLPQTKQRTQATPRALHTD 511

>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 158  RGCLRSPGPAGGFDPRAYAVDAMEDHPPP--DTRHGHDPRPIPPAGQRKRRNK 6
            +G + SPGPAG   P       +  H PP  D   GH P PI P G R  R +
Sbjct: 1126 QGAVGSPGPAGPRGP-------VGPHGPPGKDGSSGH-PGPIGPPGPRGNRGE 1170

>Y1491_HELPY (O26024) Putative phosphate permease HP1491|
          Length = 533

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 160 LAKELSRIEPKKLGIGLVAGCCLALLTYISFARLFAIYSPVFEST 294
           + K L R+      I L  GC LALL +I F R     +P  E++
Sbjct: 238 IVKVLKRLYALNFEIQLACGCILALLIFILFKRFVLKKAPQLENS 282

>CT173_HUMAN (Q96LM9) Protein C20orf173|
          Length = 149

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = -3

Query: 568 RRSSWPWPLLFYRHRLVWLPRSPLXRCFLSPLGSP 464
           R +  PWP L   H L W+  SP   CFLSP  SP
Sbjct: 12  RPNPCPWPCL---HSL-WMEISPTQLCFLSPGPSP 42

>SP39_BRUSU (Q8FVX5) Probable sugar-binding periplasmic protein precursor|
          Length = 421

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 265 AIYSPVFESTSMVMKNAPPASTAVPST 345
           AI SP F+S   V+K + PA T VP T
Sbjct: 326 AIESPAFQSAFNVVKGSAPARTDVPDT 352

>SP39_BRUME (Q8YCE2) Probable sugar-binding periplasmic protein precursor|
          Length = 421

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 265 AIYSPVFESTSMVMKNAPPASTAVPST 345
           AI SP F+S   V+K + PA T VP T
Sbjct: 326 AIESPAFQSAFNVVKGSAPARTDVPDT 352

>SP39_BRUAB (O06875) Probable sugar-binding periplasmic protein precursor|
           (Immunogenic 39 kDa protein) (P39)
          Length = 421

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 265 AIYSPVFESTSMVMKNAPPASTAVPST 345
           AI SP F+S   V+K + PA T VP T
Sbjct: 326 AIESPAFQSAFNVVKGSAPARTDVPDT 352

>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22|
          Length = 831

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 146 RSPGPAGGFDPRAYAVDAMEDHPPPDTRHGHDPR-PIPPAGQRK 18
           RSP P      R Y+ D+    PPP  R+  D R P PP  +R+
Sbjct: 760 RSPSPP---PRRRYSGDSRSPSPPPRRRYADDSRSPSPPPHRRR 800

>ACH10_RAT (Q9JLB5) Neuronal acetylcholine receptor protein, alpha-10 subunit|
           precursor (Nicotinic acetylcholine receptor subunit
           alpha 10) (NACHR alpha 10)
          Length = 447

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -2

Query: 218 PATSPIPSFLGSILLSSLASRGCLRSPG-PAGGFDPRAYAVDAMEDHPPPDTRHG--HDP 48
           P   P+P++   +LL  LA   C+R  G P G   P   A       PPP +  G  H+P
Sbjct: 327 PNAHPVPAWARVLLLGHLAKGLCVRERGEPCGQSKPLESAPSL---QPPPASPAGPCHEP 383

Query: 47  R 45
           R
Sbjct: 384 R 384


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,967,994
Number of Sequences: 219361
Number of extensions: 1042883
Number of successful extensions: 4023
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3999
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)