ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart21g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 202 9e-49
2dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic D... 202 9e-49
3ref|XM_465315.1| Oryza sativa (japonica cultivar-group), mRNA 86 1e-13
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
5dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
6dbj|AK070014.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
7gb|AF160490.1|AF160490S1 Sylvilagus floridanus transcription fac... 44 0.50
8gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 42 2.0
9gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
10gb|AC135864.5| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
11gb|AY333308.1| Flammulaster sp. PBM 1871 RNA polymerase II large... 42 2.0
12emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete ... 42 2.0
13dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
14gb|AY944574.1| Allochromatium vinosum HoxE (hoxE) gene, partial ... 42 2.0
15dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 2.0
16dbj|AK121144.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
17gb|AY109307.1| Zea mays PCO130268 mRNA sequence 42 2.0
18gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
19gb|AC147651.4| Homo sapiens BAC clone RP13-689E11 from 7, comple... 40 7.8
20gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial ... 40 7.8
21ref|NM_002607.4| Homo sapiens platelet-derived growth factor alp... 40 7.8
22ref|NM_033023.3| Homo sapiens platelet-derived growth factor alp... 40 7.8
23gb|AY335847.1| Subeucalanus subtenuis internal transcribed space... 40 7.8
24gb|AC102352.9| Mus musculus chromosome 14, clone RP23-30H7, comp... 40 7.8
25gb|AY487174.1| Locusta migratoria angiotensin converting enzyme ... 40 7.8
26emb|CR933791.16| Zebrafish DNA sequence from clone DKEYP-101F6 i... 40 7.8
27gb|AC139183.4| Mus musculus BAC clone RP24-114C21 from chromosom... 40 7.8
28emb|AL162581.11| Human DNA sequence from clone RP1-132F22 on chr... 40 7.8
29gb|AC116715.22| Mus musculus chromosome 5, clone RP23-129N14, co... 40 7.8
30emb|AL583921.1|MLEPRTN5 Mycobacterium leprae strain TN complete ... 40 7.8
31emb|AL583920.1|MLEPRTN4 Mycobacterium leprae strain TN complete ... 40 7.8
32emb|AL035310.1|MLCB2533 Mycobacterium leprae cosmid B2533 40 7.8
33gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 7.8
34gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 7.8
35gb|AY027524.1| Frankia sp. CpI1 plasmid pFQ12, complete plasmid ... 40 7.8
36gb|AF417590.1|AF417590 Homo sapiens platelet-derived growth fact... 40 7.8
37gb|AC158774.6| Mus musculus chromosome 18, clone RP23-427N16, co... 40 7.8
38gb|S51624.1|S51624S1 platelet-derived growth factor A-chain [hum... 40 7.8
39gb|AC124787.6| Mus musculus chromosome 18, clone RP24-395J18, co... 40 7.8
40dbj|AB213024.1| Desulfovibrio vulgaris rrm-1, rpL31, hyp001, prf... 40 7.8
41gb|U15180.1|MLU15180 Mycobacterium leprae cosmid B1756 40 7.8
42gb|AC084439.1|AC084439 Caenorhabditis briggsae cosmid CB005A09, ... 40 7.8
43dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.8
44dbj|BS000060.1| Pan troglodytes chromosome 22 clone:RP43-086L15,... 40 7.8
45emb|AJ486858.1|AAN486858 Anguilla anguilla mRNA for putative sod... 40 7.8
46emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 7.8
47dbj|AP001678.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 7.8
48gb|AC111089.27| Mus musculus chromosome 5, clone RP23-156F20, co... 40 7.8
49dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 7.8
50gb|M21571.1|HUMPDGFA1 Human platelet-derived growth factor (PDGF... 40 7.8
51gb|M20488.1|HUMPDGA1 Human platelet-derived growth factor A-chai... 40 7.8
52gb|U00017.1|U00017 Mycobacterium leprae cosmid B2126 40 7.8
53dbj|AP001254.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 7.8 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  202 bits (102), Expect = 9e-49
 Identities = 138/150 (92%)
 Strand = Plus / Plus

                                                                            
Query: 137      ccggcgagcggaggcagccgcggctggccaaggagctgagcaggatcgagcctaagaagc 196
                |||| ||||||||||  |||||||| |||||||||||  ||||||||||||| |||||||
Sbjct: 15383674 ccggagagcggaggcctccgcggctagccaaggagcttggcaggatcgagcccaagaagc 15383733

                                                                            
Query: 197      tcgggattgggctcgtcgccggctgctgcctcgccctcctcacctacatctccttcgccc 256
                ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 15383734 tcgggattgggctggtcgccggctgctgcctcgctctcctcacctacatctcctttgccc 15383793

                                              
Query: 257      gcctcttcgccatctactccccggtcttcg 286
                |||| |||||||||||||| ||||||||||
Sbjct: 15383794 gccttttcgccatctactcgccggtcttcg 15383823



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 286      gagagcacgtccatggtgatgaagaacgc 314
                |||||||||||| ||||||||||||||||
Sbjct: 15383914 gagagcacgtccttggtgatgaagaacgc 15383942
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>dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0613F06
          Length = 184289

 Score =  202 bits (102), Expect = 9e-49
 Identities = 138/150 (92%)
 Strand = Plus / Plus

                                                                         
Query: 137   ccggcgagcggaggcagccgcggctggccaaggagctgagcaggatcgagcctaagaagc 196
             |||| ||||||||||  |||||||| |||||||||||  ||||||||||||| |||||||
Sbjct: 51189 ccggagagcggaggcctccgcggctagccaaggagcttggcaggatcgagcccaagaagc 51248

                                                                         
Query: 197   tcgggattgggctcgtcgccggctgctgcctcgccctcctcacctacatctccttcgccc 256
             ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 51249 tcgggattgggctggtcgccggctgctgcctcgctctcctcacctacatctcctttgccc 51308

                                           
Query: 257   gcctcttcgccatctactccccggtcttcg 286
             |||| |||||||||||||| ||||||||||
Sbjct: 51309 gccttttcgccatctactcgccggtcttcg 51338



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 286   gagagcacgtccatggtgatgaagaacgc 314
             |||||||||||| ||||||||||||||||
Sbjct: 51429 gagagcacgtccttggtgatgaagaacgc 51457
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>ref|XM_465315.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2113

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 85/99 (85%)
 Strand = Plus / Plus

                                                                       
Query: 180 gatcgagcctaagaagctcgggattgggctcgtcgccggctgctgcctcgccctcctcac 239
           ||||||||| |||||||||||  | || ||| ||||||||||||||||||| ||||||||
Sbjct: 193 gatcgagcccaagaagctcggcgtcggcctcctcgccggctgctgcctcgcgctcctcac 252

                                                  
Query: 240 ctacatctccttcgcccgcctcttcgccatctactcccc 278
           |||| ||||| | |||   |||||||| |||||||||||
Sbjct: 253 ctacgtctcccttgccaagctcttcgcaatctactcccc 291
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 85/99 (85%)
 Strand = Plus / Plus

                                                                            
Query: 180      gatcgagcctaagaagctcgggattgggctcgtcgccggctgctgcctcgccctcctcac 239
                ||||||||| |||||||||||  | || ||| ||||||||||||||||||| ||||||||
Sbjct: 13367258 gatcgagcccaagaagctcggcgtcggcctcctcgccggctgctgcctcgcgctcctcac 13367317

                                                       
Query: 240      ctacatctccttcgcccgcctcttcgccatctactcccc 278
                |||| ||||| | |||   |||||||| |||||||||||
Sbjct: 13367318 ctacgtctcccttgccaagctcttcgcaatctactcccc 13367356
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>dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1521_G01
          Length = 144102

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 85/99 (85%)
 Strand = Plus / Plus

                                                                         
Query: 180   gatcgagcctaagaagctcgggattgggctcgtcgccggctgctgcctcgccctcctcac 239
             ||||||||| |||||||||||  | || ||| ||||||||||||||||||| ||||||||
Sbjct: 92509 gatcgagcccaagaagctcggcgtcggcctcctcgccggctgctgcctcgcgctcctcac 92568

                                                    
Query: 240   ctacatctccttcgcccgcctcttcgccatctactcccc 278
             |||| ||||| | |||   |||||||| |||||||||||
Sbjct: 92569 ctacgtctcccttgccaagctcttcgcaatctactcccc 92607
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>dbj|AK070014.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038E13, full
           insert sequence
          Length = 2112

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 85/99 (85%)
 Strand = Plus / Plus

                                                                       
Query: 180 gatcgagcctaagaagctcgggattgggctcgtcgccggctgctgcctcgccctcctcac 239
           ||||||||| |||||||||||  | || ||| ||||||||||||||||||| ||||||||
Sbjct: 193 gatcgagcccaagaagctcggcgtcggcctcctcgccggctgctgcctcgcgctcctcac 252

                                                  
Query: 240 ctacatctccttcgcccgcctcttcgccatctactcccc 278
           |||| ||||| | |||   |||||||| |||||||||||
Sbjct: 253 ctacgtctcccttgccaagctcttcgcaatctactcccc 291
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>gb|AF160490.1|AF160490S1 Sylvilagus floridanus transcription factor p64 (c-myc) gene, exon 2
          Length = 760

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 313 gccccgcccgcgtccacggcgg 334
           ||||||||||||||||||||||
Sbjct: 491 gccccgcccgcgtccacggcgg 512
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 347     agcaggccgtgccggtgcaga 367
               |||||||||||||||||||||
Sbjct: 1232221 agcaggccgtgccggtgcaga 1232201
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>gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041C22,
              complete sequence
          Length = 161172

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 205    gggctcgtcgccggctgctgcctcg 229
              |||||||||||||||||| ||||||
Sbjct: 144458 gggctcgtcgccggctgccgcctcg 144434
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>gb|AC135864.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0071K13, complete sequence
          Length = 176150

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 205   gggctcgtcgccggctgctgcctcg 229
             |||||||||||||||||| ||||||
Sbjct: 29400 gggctcgtcgccggctgccgcctcg 29376
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>gb|AY333308.1| Flammulaster sp. PBM 1871 RNA polymerase II largest subunit (RPB1)
           gene, partial cds
          Length = 660

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 549 caaggccaagatgacctgcga 569
           |||||||||||||||||||||
Sbjct: 78  caaggccaagatgacctgcga 98
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>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29
          Length = 283100

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 122    agccgccggccggccccggcgagcg 146
              ||||||||||||||| |||||||||
Sbjct: 147968 agccgccggccggcctcggcgagcg 147992
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 205      gggctcgtcgccggctgctgcctcg 229
                |||||||||||||||||| ||||||
Sbjct: 14919361 gggctcgtcgccggctgccgcctcg 14919337
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>gb|AY944574.1| Allochromatium vinosum HoxE (hoxE) gene, partial cds; HoxF (hoxF),
           HoxU (hoxU), and HoxY (hoxY) genes, complete cds; and
           HoxH (hoxH) gene, partial cds
          Length = 4486

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 347 agcaggccgtgccggtgcaga 367
           |||||||||||||||||||||
Sbjct: 275 agcaggccgtgccggtgcaga 255
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 216     cggctgctgcctcgccctcctcacc 240
               ||||| |||||||||||||||||||
Sbjct: 1944779 cggctcctgcctcgccctcctcacc 1944755
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>dbj|AK121144.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078A01, full
            insert sequence
          Length = 1740

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 205  gggctcgtcgccggctgctgcctcg 229
            |||||||||||||||||| ||||||
Sbjct: 1213 gggctcgtcgccggctgccgcctcg 1237
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>gb|AY109307.1| Zea mays PCO130268 mRNA sequence
          Length = 3927

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 320  ccgcgtccacggcggtgccca 340
            |||||||||||||||||||||
Sbjct: 1537 ccgcgtccacggcggtgccca 1557
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 205      gggctcgtcgccggctgctgcctcg 229
                |||||||||||||||||| ||||||
Sbjct: 15001308 gggctcgtcgccggctgccgcctcg 15001284
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>gb|AC147651.4| Homo sapiens BAC clone RP13-689E11 from 7, complete sequence
          Length = 162139

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   ccggccccggcgagcggagg 150
             ||||||||||||||||||||
Sbjct: 48248 ccggccccggcgagcggagg 48229
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>gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence
          Length = 114045

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 243   catctccttcgcccgcctcttcgccatc 270
             |||||||||||| | |||||||||||||
Sbjct: 32043 catctccttcgcgctcctcttcgccatc 32016
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>ref|NM_002607.4| Homo sapiens platelet-derived growth factor alpha polypeptide
           (PDGFA), transcript variant 1, mRNA
          Length = 2818

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 ccggccccggcgagcggagg 150
           ||||||||||||||||||||
Sbjct: 193 ccggccccggcgagcggagg 212
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>ref|NM_033023.3| Homo sapiens platelet-derived growth factor alpha polypeptide
           (PDGFA), transcript variant 2, mRNA
          Length = 2749

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 ccggccccggcgagcggagg 150
           ||||||||||||||||||||
Sbjct: 193 ccggccccggcgagcggagg 212
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>gb|AY335847.1| Subeucalanus subtenuis internal transcribed spacer 2, complete
           sequence; and 28S ribosomal RNA gene, partial sequence
          Length = 500

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 549 caaggccaagatgacctgcg 568
           ||||||||||||||||||||
Sbjct: 72  caaggccaagatgacctgcg 91
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>gb|AC102352.9| Mus musculus chromosome 14, clone RP23-30H7, complete sequence
          Length = 248441

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      tgttttgtttcttctcttgc 22
              ||||||||||||||||||||
Sbjct: 113871 tgttttgtttcttctcttgc 113890
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>gb|AY487174.1| Locusta migratoria angiotensin converting enzyme mRNA, partial cds
          Length = 2061

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 329 cggcggtgcccagcacggag 348
           ||||||||||||||||||||
Sbjct: 298 cggcggtgcccagcacggag 279
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>emb|CR933791.16| Zebrafish DNA sequence from clone DKEYP-101F6 in linkage group 13,
              complete sequence
          Length = 176605

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 294    gtccatggtgatgaagaacgcccc 317
              ||||||||||||||||||| ||||
Sbjct: 111895 gtccatggtgatgaagaacacccc 111918
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>gb|AC139183.4| Mus musculus BAC clone RP24-114C21 from chromosome 18, complete sequence
          Length = 147109

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 527    gtggcgataaaacagaagaggcca 550
              ||||| ||||||||||||||||||
Sbjct: 135313 gtggctataaaacagaagaggcca 135336
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>emb|AL162581.11| Human DNA sequence from clone RP1-132F22 on chromosome 6 Contains the
             5' part of the GSTA4 gene for glutathione S-transferase A4
             and the 3' part of the KIAA0936 gene for a MAK-related
             kinase, complete sequence
          Length = 33993

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 382   gaggagcagaaagatctggg 401
             ||||||||||||||||||||
Sbjct: 23683 gaggagcagaaagatctggg 23702
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>gb|AC116715.22| Mus musculus chromosome 5, clone RP23-129N14, complete sequence
          Length = 193245

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     gtgatcttccatggcgtcca 100
              ||||||||||||||||||||
Sbjct: 185674 gtgatcttccatggcgtcca 185655
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>emb|AL583921.1|MLEPRTN5 Mycobacterium leprae strain TN complete genome; segment 5/10
          Length = 332450

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 365    agaagaaggtcgaagtcgaggagc 388
              |||||||||||||||||| |||||
Sbjct: 209916 agaagaaggtcgaagtcgcggagc 209939
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>emb|AL583920.1|MLEPRTN4 Mycobacterium leprae strain TN complete genome; segment 4/10
          Length = 348450

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    gctcgggattgggctcgtcg 214
              ||||||||||||||||||||
Sbjct: 239874 gctcgggattgggctcgtcg 239855
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>emb|AL035310.1|MLCB2533 Mycobacterium leprae cosmid B2533
          Length = 40245

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 365  agaagaaggtcgaagtcgaggagc 388
            |||||||||||||||||| |||||
Sbjct: 5400 agaagaaggtcgaagtcgcggagc 5423
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 155     cgcggctggccaaggagctg 174
               ||||||||||||||||||||
Sbjct: 1949055 cgcggctggccaaggagctg 1949036
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 155     cgcggctggccaaggagctg 174
               ||||||||||||||||||||
Sbjct: 1908003 cgcggctggccaaggagctg 1907984
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>gb|AY027524.1| Frankia sp. CpI1 plasmid pFQ12, complete plasmid sequence
          Length = 22437

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 125  cgccggccggccccggcgag 144
            ||||||||||||||||||||
Sbjct: 3523 cgccggccggccccggcgag 3504
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>gb|AF417590.1|AF417590 Homo sapiens platelet-derived growth factor A chain (PDGFA) gene,
           exon 1 and partial sequence
          Length = 392

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 ccggccccggcgagcggagg 150
           ||||||||||||||||||||
Sbjct: 145 ccggccccggcgagcggagg 164
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>gb|AC158774.6| Mus musculus chromosome 18, clone RP23-427N16, complete sequence
          Length = 207351

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 527    gtggcgataaaacagaagaggcca 550
              ||||| ||||||||||||||||||
Sbjct: 123290 gtggctataaaacagaagaggcca 123313
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>gb|S51624.1|S51624S1 platelet-derived growth factor A-chain [human, Genomic, 1399 nt,
           segment 1 of 2]
          Length = 1399

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 ccggccccggcgagcggagg 150
           ||||||||||||||||||||
Sbjct: 685 ccggccccggcgagcggagg 704
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>gb|AC124787.6| Mus musculus chromosome 18, clone RP24-395J18, complete sequence
          Length = 164628

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 527    gtggcgataaaacagaagaggcca 550
              ||||| ||||||||||||||||||
Sbjct: 140852 gtggctataaaacagaagaggcca 140875
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>dbj|AB213024.1| Desulfovibrio vulgaris rrm-1, rpL31, hyp001, prfA, hemk genes for
            rRNA methylase, ribosomal protein L31, hypothetical
            protein, peptide release factor 1, HemK protein, complete
            cds
          Length = 5528

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 549  caaggccaagatgacctgcg 568
            ||||||||||||||||||||
Sbjct: 1525 caaggccaagatgacctgcg 1544
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>gb|U15180.1|MLU15180 Mycobacterium leprae cosmid B1756
          Length = 38675

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   gctcgggattgggctcgtcg 214
             ||||||||||||||||||||
Sbjct: 20138 gctcgggattgggctcgtcg 20119
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>gb|AC084439.1|AC084439 Caenorhabditis briggsae cosmid CB005A09, complete sequence
          Length = 82884

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     attgttttgtttcttctctt 20
             ||||||||||||||||||||
Sbjct: 20585 attgttttgtttcttctctt 20604
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 554     ccaagatgacctgcgacgag 573
               ||||||||||||||||||||
Sbjct: 3326759 ccaagatgacctgcgacgag 3326740
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>dbj|BS000060.1| Pan troglodytes chromosome 22 clone:RP43-086L15, map 22, complete
             sequences
          Length = 159919

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     ttgttttgtttcttctcttg 21
             ||||||||||||||||||||
Sbjct: 92520 ttgttttgtttcttctcttg 92501
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>emb|AJ486858.1|AAN486858 Anguilla anguilla mRNA for putative sodium-potassium-chloride
            cotransporter (nkcc1a gene)
          Length = 4063

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 548  ccaaggccaagatgacctgc 567
            ||||||||||||||||||||
Sbjct: 3162 ccaaggccaagatgacctgc 3181
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 156     gcggctggccaaggagctga 175
               ||||||||||||||||||||
Sbjct: 4439256 gcggctggccaaggagctga 4439237
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>dbj|AP001678.1| Homo sapiens genomic DNA, chromosome 21q, section 22/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      ttgttttgtttcttctcttg 21
              ||||||||||||||||||||
Sbjct: 213920 ttgttttgtttcttctcttg 213901
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>gb|AC111089.27| Mus musculus chromosome 5, clone RP23-156F20, complete sequence
          Length = 211658

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     gtgatcttccatggcgtcca 100
              ||||||||||||||||||||
Sbjct: 153295 gtgatcttccatggcgtcca 153314
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 123     gccgccggccggccccggcg 142
               ||||||||||||||||||||
Sbjct: 3101396 gccgccggccggccccggcg 3101415
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>gb|M21571.1|HUMPDGFA1 Human platelet-derived growth factor (PDGFA) A chain gene, exon 1
          Length = 1209

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 ccggccccggcgagcggagg 150
           ||||||||||||||||||||
Sbjct: 453 ccggccccggcgagcggagg 472
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>gb|M20488.1|HUMPDGA1 Human platelet-derived growth factor A-chain gene, exon 1
          Length = 1285

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 ccggccccggcgagcggagg 150
           ||||||||||||||||||||
Sbjct: 491 ccggccccggcgagcggagg 510
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>gb|U00017.1|U00017 Mycobacterium leprae cosmid B2126
          Length = 42157

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 365   agaagaaggtcgaagtcgaggagc 388
             |||||||||||||||||| |||||
Sbjct: 26282 agaagaaggtcgaagtcgcggagc 26259
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>dbj|AP001254.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B66B12,
             LL56-APP region, complete sequence
          Length = 173915

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     ttgttttgtttcttctcttg 21
             ||||||||||||||||||||
Sbjct: 36513 ttgttttgtttcttctcttg 36494


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,555,762
Number of Sequences: 3902068
Number of extensions: 5555762
Number of successful extensions: 103601
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102746
Number of HSP's gapped (non-prelim): 855
length of query: 573
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 550
effective length of database: 17,143,297,704
effective search space: 9428813737200
effective search space used: 9428813737200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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