ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart21f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469911.1| Oryza sativa (japonica cultivar-group), mRNA 117 4e-23
2dbj|AK104279.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 4e-23
3dbj|AK098932.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 4e-23
4dbj|AK073052.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 4e-23
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 82 2e-12
6gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genom... 82 2e-12
7gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genom... 82 2e-12
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
9dbj|AP006540.1| Lotus japonicus genomic DNA, chromosome 2, clone... 62 2e-06
10ref|NM_119883.2| Arabidopsis thaliana HCF164; thiol-disulfide ex... 60 8e-06
11emb|Z99707.1|ATAP21 Arabidopsis thaliana DNA chromosome 4, ESSA ... 60 8e-06
12emb|AL161591.2|ATCHRIV87 Arabidopsis thaliana DNA chromosome 4, ... 60 8e-06
13emb|AL161590.2|ATCHRIV86 Arabidopsis thaliana DNA chromosome 4, ... 60 8e-06
14emb|AJ293262.1|ATH293262 Arabidopsis thaliana mRNA for thioredox... 60 8e-06
15gb|AY097426.1| Arabidopsis thaliana AT4g37200/C7A10_160 mRNA, co... 60 8e-06
16gb|AY075671.1| Arabidopsis thaliana AT4g37200/C7A10_160 mRNA, co... 60 8e-06
17emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 50 0.008
18gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.50
19gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome 44 0.50
20gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 44 0.50
21dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
22gb|AC009720.19| Homo sapiens chromosome 17, clone RP11-1094H24, ... 44 0.50
23gb|AC136967.1| Papio anubis clone RP41-30N22, complete sequence 44 0.50
24gb|AC002401.2| Homo sapiens chromosome 17, clone RP5-875H18, com... 44 0.50
25gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 42 2.0
26ref|XM_368278.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 42 2.0
27ref|XM_677244.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 2.0
28emb|AL359815.26| Human DNA sequence from clone RP11-63N8 on chro... 42 2.0
29emb|BX572090.1| Prochlorococcus marinus MED4 complete genome; se... 42 2.0
30gb|AC025727.3| Caenorhabditis elegans cosmid Y73E7A, complete se... 42 2.0
31ref|XM_944129.1| PREDICTED: Homo sapiens hypothetical protein LO... 42 2.0
32ref|XM_235070.3| PREDICTED: Rattus norvegicus ubiquitin specific... 42 2.0
33ref|XM_584123.2| PREDICTED: Bos taurus similar to sperm specific... 40 7.8
34gb|AY452667.1| Chlamydomonas reinhardtii flagellar radial spoke ... 40 7.8
35gb|AC121856.3| Mus musculus BAC clone RP24-97G6 from chromosome ... 40 7.8
36ref|XM_860856.1| PREDICTED: Canis familiaris similar to AT rich ... 40 7.8
37ref|XM_860834.1| PREDICTED: Canis familiaris similar to AT rich ... 40 7.8
38ref|XM_847453.1| PREDICTED: Canis familiaris similar to AT rich ... 40 7.8
39ref|NM_006015.3| Homo sapiens AT rich interactive domain 1A (SWI... 40 7.8
40ref|NM_139135.1| Homo sapiens AT rich interactive domain 1A (SWI... 40 7.8
41emb|AL512408.12| Human DNA sequence from clone RP5-968P14 on chr... 40 7.8
42gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 7.8
43emb|AL138760.14| Human DNA sequence from clone RP11-123B3 on chr... 40 7.8
44emb|AL133343.23| Human DNA sequence from clone RP11-410N8 on chr... 40 7.8
45emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 7.8
46emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 40 7.8
47gb|AC091666.4| Oryza sativa (japonica cultivar-group) chromosome... 40 7.8
48gb|AC164663.5| Mus musculus 10 BAC RP23-44F24 (Roswell Park Canc... 40 7.8
49emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encepha... 40 7.8
50emb|CR925752.5| Mouse DNA sequence from clone RP24-106O24 on chr... 40 7.8
51gb|AC158802.3| Mus musculus 10 BAC RP24-328C19 (Roswell Park Can... 40 7.8
52gb|AC123594.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.8
53gb|AY089958.1| Encephalitozoon cuniculi polar tube protein (ptp3... 40 7.8
54gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 7.8
55dbj|AP003923.1| Mus musculus genomic DNA, chromosome 2, clone:B4... 40 7.8
56gb|AC079616.4| Homo sapiens BAC clone RP11-605L5 from 4, complet... 40 7.8
57gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 7.8
58dbj|AK081017.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 7.8
59gb|AC150241.3| Rhinolophus ferrumequinum clone VMRC7-311G24, com... 40 7.8
60dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
61gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold 40 7.8
62gb|AC016906.7| Homo sapiens BAC clone RP11-436E24 from 2, comple... 40 7.8
63gb|AF231056.1|AF231056 Homo sapiens BRG1-Associated Factor 250a ... 40 7.8
64ref|XM_216340.3| PREDICTED: Rattus norvegicus AT rich interactiv... 40 7.8
65dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 7.8
66dbj|AK059264.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.8
67dbj|AP005858.1| Mus musculus genomic DNA, chromosome 2 clone:B47... 40 7.8
68gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 7.8
69gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.8
70emb|AL844144.10| Mouse DNA sequence from clone RP23-204D17 on ch... 40 7.8 
>ref|XM_469911.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1220

 Score =  117 bits (59), Expect = 4e-23
 Identities = 92/103 (89%)
 Strand = Plus / Plus

                                                                       
Query: 472 tttctctcaaagatcttgctgccaatgctgtgccatatgaagaggctctctcaaatggca 531
           ||||||||||||||||||| || ||||||   || |||||||||||||||||||||||||
Sbjct: 394 tttctctcaaagatcttgcagcaaatgctacaccgtatgaagaggctctctcaaatggca 453

                                                      
Query: 532 agcccactgttgtcgagttttatgcggattggtgtgaagtttg 574
           |||||||||| || || |||||||| || ||||||||||||||
Sbjct: 454 agcccactgtagttgaattttatgcagactggtgtgaagtttg 496



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 247 ccctgtcctgcgtcgcgccgcccgactccgcggagccgaagacgga 292
           |||| |||||| ||||||||||||| || ||||||||| |||||||
Sbjct: 175 ccctctcctgcatcgcgccgcccgattcggcggagccgcagacgga 220
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>dbj|AK104279.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-F07, full
           insert sequence
          Length = 1255

 Score =  117 bits (59), Expect = 4e-23
 Identities = 92/103 (89%)
 Strand = Plus / Plus

                                                                       
Query: 472 tttctctcaaagatcttgctgccaatgctgtgccatatgaagaggctctctcaaatggca 531
           ||||||||||||||||||| || ||||||   || |||||||||||||||||||||||||
Sbjct: 412 tttctctcaaagatcttgcagcaaatgctacaccgtatgaagaggctctctcaaatggca 471

                                                      
Query: 532 agcccactgttgtcgagttttatgcggattggtgtgaagtttg 574
           |||||||||| || || |||||||| || ||||||||||||||
Sbjct: 472 agcccactgtagttgaattttatgcagactggtgtgaagtttg 514



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 247 ccctgtcctgcgtcgcgccgcccgactccgcggagccgaagacgga 292
           |||| |||||| ||||||||||||| || ||||||||| |||||||
Sbjct: 193 ccctctcctgcatcgcgccgcccgattcggcggagccgcagacgga 238
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>dbj|AK098932.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013025I21, full
           insert sequence
          Length = 1238

 Score =  117 bits (59), Expect = 4e-23
 Identities = 92/103 (89%)
 Strand = Plus / Plus

                                                                       
Query: 472 tttctctcaaagatcttgctgccaatgctgtgccatatgaagaggctctctcaaatggca 531
           ||||||||||||||||||| || ||||||   || |||||||||||||||||||||||||
Sbjct: 420 tttctctcaaagatcttgcagcaaatgctacaccgtatgaagaggctctctcaaatggca 479

                                                      
Query: 532 agcccactgttgtcgagttttatgcggattggtgtgaagtttg 574
           |||||||||| || || |||||||| || ||||||||||||||
Sbjct: 480 agcccactgtagttgaattttatgcagactggtgtgaagtttg 522



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 247 ccctgtcctgcgtcgcgccgcccgactccgcggagccgaagacgga 292
           |||| |||||| ||||||||||||| || ||||||||| |||||||
Sbjct: 201 ccctctcctgcatcgcgccgcccgattcggcggagccgcagacgga 246
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>dbj|AK073052.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033003G10, full
           insert sequence
          Length = 1248

 Score =  117 bits (59), Expect = 4e-23
 Identities = 92/103 (89%)
 Strand = Plus / Plus

                                                                       
Query: 472 tttctctcaaagatcttgctgccaatgctgtgccatatgaagaggctctctcaaatggca 531
           ||||||||||||||||||| || ||||||   || |||||||||||||||||||||||||
Sbjct: 422 tttctctcaaagatcttgcagcaaatgctacaccgtatgaagaggctctctcaaatggca 481

                                                      
Query: 532 agcccactgttgtcgagttttatgcggattggtgtgaagtttg 574
           |||||||||| || || |||||||| || ||||||||||||||
Sbjct: 482 agcccactgtagttgaattttatgcagactggtgtgaagtttg 524



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 247 ccctgtcctgcgtcgcgccgcccgactccgcggagccgaagacgga 292
           |||| |||||| ||||||||||||| || ||||||||| |||||||
Sbjct: 203 ccctctcctgcatcgcgccgcccgattcggcggagccgcagacgga 248
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                            
Query: 514      aggctctctcaaatggcaagcccactgttgtcgagttttatgcggattggtgtgaagttt 573
                |||||||||||||||||||||||||||| || || |||||||| || |||||||||||||
Sbjct: 31475891 aggctctctcaaatggcaagcccactgtagttgaattttatgcagactggtgtgaagttt 31475832

                 
Query: 574      g 574
                |
Sbjct: 31475831 g 31475831



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                             
Query: 247      ccctgtcctgcgtcgcgccgcccgactccgcggagccgaagacgg 291
                |||| |||||| ||||||||||||| || ||||||||| ||||||
Sbjct: 31477248 ccctctcctgcatcgcgccgcccgattcggcggagccgcagacgg 31477204



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 472      tttctctcaaagatcttgctgccaatgct 500
                ||||||||||||||||||| || ||||||
Sbjct: 31476675 tttctctcaaagatcttgcagcaaatgct 31476647
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>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete
              sequence
          Length = 133449

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                          
Query: 514    aggctctctcaaatggcaagcccactgttgtcgagttttatgcggattggtgtgaagttt 573
              |||||||||||||||||||||||||||| || || |||||||| || |||||||||||||
Sbjct: 116705 aggctctctcaaatggcaagcccactgtagttgaattttatgcagactggtgtgaagttt 116764

               
Query: 574    g 574
              |
Sbjct: 116765 g 116765



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                           
Query: 247    ccctgtcctgcgtcgcgccgcccgactccgcggagccgaagacgg 291
              |||| |||||| ||||||||||||| || ||||||||| ||||||
Sbjct: 115348 ccctctcctgcatcgcgccgcccgattcggcggagccgcagacgg 115392



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 472    tttctctcaaagatcttgctgccaatgct 500
              ||||||||||||||||||| || ||||||
Sbjct: 115921 tttctctcaaagatcttgcagcaaatgct 115949
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>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete
             sequence
          Length = 159091

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                         
Query: 514   aggctctctcaaatggcaagcccactgttgtcgagttttatgcggattggtgtgaagttt 573
             |||||||||||||||||||||||||||| || || |||||||| || |||||||||||||
Sbjct: 19909 aggctctctcaaatggcaagcccactgtagttgaattttatgcagactggtgtgaagttt 19968

              
Query: 574   g 574
             |
Sbjct: 19969 g 19969



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                          
Query: 247   ccctgtcctgcgtcgcgccgcccgactccgcggagccgaagacgg 291
             |||| |||||| ||||||||||||| || ||||||||| ||||||
Sbjct: 18552 ccctctcctgcatcgcgccgcccgattcggcggagccgcagacgg 18596



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 472   tttctctcaaagatcttgctgccaatgct 500
             ||||||||||||||||||| || ||||||
Sbjct: 19125 tttctctcaaagatcttgcagcaaatgct 19153
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                            
Query: 514      aggctctctcaaatggcaagcccactgttgtcgagttttatgcggattggtgtgaagttt 573
                |||||||||||||||||||||||||||| || || |||||||| || |||||||||||||
Sbjct: 31566407 aggctctctcaaatggcaagcccactgtagttgaattttatgcagactggtgtgaagttt 31566348

                 
Query: 574      g 574
                |
Sbjct: 31566347 g 31566347



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                             
Query: 247      ccctgtcctgcgtcgcgccgcccgactccgcggagccgaagacgg 291
                |||| |||||| ||||||||||||| || ||||||||| ||||||
Sbjct: 31567764 ccctctcctgcatcgcgccgcccgattcggcggagccgcagacgg 31567720



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 472      tttctctcaaagatcttgctgccaatgct 500
                ||||||||||||||||||| || ||||||
Sbjct: 31567191 tttctctcaaagatcttgcagcaaatgct 31567163
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>dbj|AP006540.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01C03, TM0559,
             complete sequence
          Length = 80535

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                    
Query: 514   aggctctctcaaatggcaagcccactgttgtcgagttttatgcggattggtgtga 568
             ||||||| |||||||| |||||||| || || ||||||||||| |||||||||||
Sbjct: 22722 aggctctatcaaatgggaagcccaccgtggtggagttttatgcagattggtgtga 22668
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>ref|NM_119883.2| Arabidopsis thaliana HCF164; thiol-disulfide exchange intermediate
           AT4G37200 (HCF164) mRNA, complete cds
          Length = 1238

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 525 aatggcaagcccactgttgtcgagttttatgcggattggtgtgaagtttg 574
           ||||| ||||| |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 427 aatgggaagccgactgttgttgagttctatgcagattggtgtgaagtttg 476
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>emb|Z99707.1|ATAP21 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1
          Length = 206420

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 525   aatggcaagcccactgttgtcgagttttatgcggattggtgtgaagtttg 574
             ||||| ||||| |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 57008 aatgggaagccgactgttgttgagttctatgcagattggtgtgaagtttg 57057
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>emb|AL161591.2|ATCHRIV87 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 87
          Length = 196339

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 525  aatggcaagcccactgttgtcgagttttatgcggattggtgtgaagtttg 574
            ||||| ||||| |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 4446 aatgggaagccgactgttgttgagttctatgcagattggtgtgaagtttg 4397
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>emb|AL161590.2|ATCHRIV86 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86
          Length = 198780

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                
Query: 525    aatggcaagcccactgttgtcgagttttatgcggattggtgtgaagtttg 574
              ||||| ||||| |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 198226 aatgggaagccgactgttgttgagttctatgcagattggtgtgaagtttg 198177
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>emb|AJ293262.1|ATH293262 Arabidopsis thaliana mRNA for thioredoxin-like protein (hcf164
           gene)
          Length = 814

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 525 aatggcaagcccactgttgtcgagttttatgcggattggtgtgaagtttg 574
           ||||| ||||| |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 414 aatgggaagccgactgttgttgagttctatgcagattggtgtgaagtttg 463
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>gb|AY097426.1| Arabidopsis thaliana AT4g37200/C7A10_160 mRNA, complete cds
          Length = 786

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 525 aatggcaagcccactgttgtcgagttttatgcggattggtgtgaagtttg 574
           ||||| ||||| |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 409 aatgggaagccgactgttgttgagttctatgcagattggtgtgaagtttg 458
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>gb|AY075671.1| Arabidopsis thaliana AT4g37200/C7A10_160 mRNA, complete cds
          Length = 976

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 525 aatggcaagcccactgttgtcgagttttatgcggattggtgtgaagtttg 574
           ||||| ||||| |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 426 aatgggaagccgactgttgttgagttctatgcagattggtgtgaagtttg 475
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>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 225    cggtgccgccgccggccgagaaccc 249
              |||||||||||||||||||||||||
Sbjct: 180283 cggtgccgccgccggccgagaaccc 180307
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>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01,
             complete sequence
          Length = 117724

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 184   gccgctcgcctccgccttcttcttcc 209
             |||||||||| |||||||||||||||
Sbjct: 91318 gccgctcgcccccgccttcttcttcc 91293
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>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome
          Length = 1842899

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 549     ttttatgcggattggtgtgaag 570
               ||||||||||||||||||||||
Sbjct: 1573237 ttttatgcggattggtgtgaag 1573258
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 181     gcagccgctcgcctccgccttc 202
               ||||||||||||||||||||||
Sbjct: 1841540 gcagccgctcgcctccgccttc 1841561
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 184      gccgctcgcctccgccttcttcttcc 209
                |||||||||| |||||||||||||||
Sbjct: 14362532 gccgctcgcccccgccttcttcttcc 14362507
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>gb|AC009720.19| Homo sapiens chromosome 17, clone RP11-1094H24, complete sequence
          Length = 146101

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 309   gctgagctgggtgaagagaagg 330
             ||||||||||||||||||||||
Sbjct: 10611 gctgagctgggtgaagagaagg 10590
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>gb|AC136967.1| Papio anubis clone RP41-30N22, complete sequence
          Length = 194730

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 309    gctgagctgggtgaagagaagg 330
              ||||||||||||||||||||||
Sbjct: 162447 gctgagctgggtgaagagaagg 162468
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>gb|AC002401.2| Homo sapiens chromosome 17, clone RP5-875H18, complete sequence
          Length = 113128

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 309    gctgagctgggtgaagagaagg 330
              ||||||||||||||||||||||
Sbjct: 105743 gctgagctgggtgaagagaagg 105722
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 167    cctcgcggggctccgcagccg 187
              |||||||||||||||||||||
Sbjct: 993039 cctcgcggggctccgcagccg 993019
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>ref|XM_368278.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00966.4) partial mRNA
          Length = 1389

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 222 cgccggtgccgccgccggccgagaa 246
           ||||||||||||||||||| |||||
Sbjct: 141 cgccggtgccgccgccggcggagaa 165
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>ref|XM_677244.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN9067.2), mRNA
          Length = 2937

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 297  cagcaggtgaaagctgagctg 317
            |||||||||||||||||||||
Sbjct: 1276 cagcaggtgaaagctgagctg 1296
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>emb|AL359815.26| Human DNA sequence from clone RP11-63N8 on chromosome 1 Contains the 3'
             end of the ALPL gene for alkaline phosphatase,
             liver/bone/kidney, the RAP1GA1 gene for RAP1, GTPase
             activating protein 1, a novel gene, the 3' end of the
             USP31 gene for ubiquitin specific protease 31 and a CpG
             island, complete sequence
          Length = 149651

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 143   cctcctccaggacctgcggccgggc 167
             |||||||||||||||||||| ||||
Sbjct: 94285 cctcctccaggacctgcggcggggc 94261
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>emb|BX572090.1| Prochlorococcus marinus MED4 complete genome; segment 1/5
          Length = 349742

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 546    gagttttatgcggattggtgtgaagtttg 574
              ||||||||||| |||||||| ||||||||
Sbjct: 236333 gagttttatgcagattggtgcgaagtttg 236361
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>gb|AC025727.3| Caenorhabditis elegans cosmid Y73E7A, complete sequence
          Length = 63747

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 92    ccgaagcgtaaactgaaaaat 112
             |||||||||||||||||||||
Sbjct: 57901 ccgaagcgtaaactgaaaaat 57881
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>ref|XM_944129.1| PREDICTED: Homo sapiens hypothetical protein LOC650278 (LOC650278),
            mRNA
          Length = 1866

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 143  cctcctccaggacctgcggccgggc 167
            |||||||||||||||||||| ||||
Sbjct: 1676 cctcctccaggacctgcggcggggc 1652
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>ref|XM_235070.3| PREDICTED: Rattus norvegicus ubiquitin specific protease 44
           (predicted) (Usp44_predicted), mRNA
          Length = 2284

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 294 gaacagcaggtgaaagctgagctgg 318
           ||||||||| |||||||||||||||
Sbjct: 711 gaacagcagatgaaagctgagctgg 735
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>ref|XM_584123.2| PREDICTED: Bos taurus similar to sperm specific antigen 2
           (LOC538993), mRNA
          Length = 1797

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 139 gcctcctcctccaggacctg 158
           ||||||||||||||||||||
Sbjct: 98  gcctcctcctccaggacctg 79
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>gb|AY452667.1| Chlamydomonas reinhardtii flagellar radial spoke nucleoside
            diphosphate kinase mRNA, complete cds
          Length = 2219

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 221  gcgccggtgccgccgccggc 240
            ||||||||||||||||||||
Sbjct: 1061 gcgccggtgccgccgccggc 1080
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>gb|AC121856.3| Mus musculus BAC clone RP24-97G6 from chromosome 5, complete sequence
          Length = 195640

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 498   gctgtgccatatgaagaggc 517
             ||||||||||||||||||||
Sbjct: 38735 gctgtgccatatgaagaggc 38754
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>ref|XM_860856.1| PREDICTED: Canis familiaris similar to AT rich interactive domain
           1A (SWI- like) isoform c, transcript variant 3
           (LOC487352), mRNA
          Length = 7836

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 cgggcctcgcggggctccgc 182
           ||||||||||||||||||||
Sbjct: 258 cgggcctcgcggggctccgc 239
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>ref|XM_860834.1| PREDICTED: Canis familiaris similar to AT rich interactive domain
           1A (SWI- like) isoform c, transcript variant 2
           (LOC487352), mRNA
          Length = 7595

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 cgggcctcgcggggctccgc 182
           ||||||||||||||||||||
Sbjct: 258 cgggcctcgcggggctccgc 239
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>ref|XM_847453.1| PREDICTED: Canis familiaris similar to AT rich interactive domain
           1A (SWI- like) isoform c, transcript variant 1
           (LOC487352), mRNA
          Length = 8487

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 cgggcctcgcggggctccgc 182
           ||||||||||||||||||||
Sbjct: 258 cgggcctcgcggggctccgc 239
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>ref|NM_006015.3| Homo sapiens AT rich interactive domain 1A (SWI- like) (ARID1A),
           transcript variant 1, mRNA
          Length = 8595

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 cgggcctcgcggggctccgc 182
           ||||||||||||||||||||
Sbjct: 259 cgggcctcgcggggctccgc 240
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>ref|NM_139135.1| Homo sapiens AT rich interactive domain 1A (SWI- like) (ARID1A),
           transcript variant 2, mRNA
          Length = 7944

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 cgggcctcgcggggctccgc 182
           ||||||||||||||||||||
Sbjct: 259 cgggcctcgcggggctccgc 240
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>emb|AL512408.12| Human DNA sequence from clone RP5-968P14 on chromosome 1 Contains the
             5' end of the SMARCF1 gene for SWI/SNF related, matrix
             associated, actin dependent regulator of chromatin
             (subfamily f, member 1) and a CpG island, complete
             sequence
          Length = 64214

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   cgggcctcgcggggctccgc 182
             ||||||||||||||||||||
Sbjct: 44505 cgggcctcgcggggctccgc 44524
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 259     tcgcgccgcccgactccgcg 278
               ||||||||||||||||||||
Sbjct: 2259766 tcgcgccgcccgactccgcg 2259747
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>emb|AL138760.14| Human DNA sequence from clone RP11-123B3 on chromosome 10 Contains the
             gene for a novel protein similar to rodent paired-like
             homeodomain trancription factor Drg11, a novel gene, the
             3' end of the ERCC6 gene for excision repair
             cross-complementing rodent repair deficiency
             complementation group 6 and a CpG island, complete
             sequence
          Length = 173268

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   cggcctcctcctccaggacc 156
             ||||||||||||||||||||
Sbjct: 80358 cggcctcctcctccaggacc 80377
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>emb|AL133343.23| Human DNA sequence from clone RP11-410N8 on chromosome 20 Contains the
             5' end of two variants of the C20orf112 gene for a novel
             protein similar to nucleolar protein 4 (NOL4), three novel
             genes and a CpG island, complete sequence
          Length = 63609

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 215   ccatctgcgccggtgccgccgccggccg 242
             |||||||||||| ||||||| |||||||
Sbjct: 29130 ccatctgcgccgctgccgcctccggccg 29103
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   tgccgccgccggccgagaac 247
             ||||||||||||||||||||
Sbjct: 93289 tgccgccgccggccgagaac 93308
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>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   tgccgccgccggccgagaac 247
             ||||||||||||||||||||
Sbjct: 16332 tgccgccgccggccgagaac 16351
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>gb|AC091666.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            OSJNBb0078C13, complete sequence
          Length = 140553

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 182  cagccgctcgcctccgccttcttcttcc 209
            |||| ||||| |||||||||||||||||
Sbjct: 9077 cagcggctcggctccgccttcttcttcc 9104
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>gb|AC164663.5| Mus musculus 10 BAC RP23-44F24 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 192449

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 158   gcggccgggcctcgcggggctccg 181
             ||||||||| ||||||||||||||
Sbjct: 23083 gcggccggggctcgcggggctccg 23060
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>emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 267509

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    gctcagccaagcagcagcac 349
              ||||||||||||||||||||
Sbjct: 185589 gctcagccaagcagcagcac 185570
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>emb|CR925752.5| Mouse DNA sequence from clone RP24-106O24 on chromosome 4, complete
             sequence
          Length = 103739

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   cgggcctcgcggggctccgc 182
             ||||||||||||||||||||
Sbjct: 32229 cgggcctcgcggggctccgc 32248
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>gb|AC158802.3| Mus musculus 10 BAC RP24-328C19 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 140389

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 158    gcggccgggcctcgcggggctccg 181
              ||||||||| ||||||||||||||
Sbjct: 107503 gcggccggggctcgcggggctccg 107480
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>gb|AC123594.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAb0078C13, complete sequence
          Length = 146538

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 182   cagccgctcgcctccgccttcttcttcc 209
             |||| ||||| |||||||||||||||||
Sbjct: 41637 cagcggctcggctccgccttcttcttcc 41610
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>gb|AY089958.1| Encephalitozoon cuniculi polar tube protein (ptp3) mRNA, complete cds
          Length = 3990

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 330  gctcagccaagcagcagcac 349
            ||||||||||||||||||||
Sbjct: 1471 gctcagccaagcagcagcac 1490
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 214     tccatctgcgccggtgccgc 233
               ||||||||||||||||||||
Sbjct: 4581765 tccatctgcgccggtgccgc 4581784
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>dbj|AP003923.1| Mus musculus genomic DNA, chromosome 2, clone:B478c13, complete sequence
          Length = 171634

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 215    ccatctgcgccggtgccgccgccggccg 242
              |||||||||||| ||||||| |||||||
Sbjct: 156937 ccatctgcgccgctgccgcctccggccg 156964
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>gb|AC079616.4| Homo sapiens BAC clone RP11-605L5 from 4, complete sequence
          Length = 165913

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 459    cagcttggcgggttttctctcaaa 482
              |||||||| |||||||||||||||
Sbjct: 101026 cagcttggagggttttctctcaaa 101003
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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 477    ctcaaagatcttgctgccaa 496
              ||||||||||||||||||||
Sbjct: 532095 ctcaaagatcttgctgccaa 532076
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>dbj|AK081017.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:B930054O08
           product:unclassifiable, full insert sequence
          Length = 3234

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 158 gcggccgggcctcgcggggctccg 181
           ||||||||| ||||||||||||||
Sbjct: 284 gcggccggggctcgcggggctccg 261
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>gb|AC150241.3| Rhinolophus ferrumequinum clone VMRC7-311G24, complete sequence
          Length = 174113

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   cctcctcctccaggacctgc 159
             ||||||||||||||||||||
Sbjct: 87647 cctcctcctccaggacctgc 87666
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 182      cagccgctcgcctccgccttcttcttcc 209
                |||| ||||| |||||||||||||||||
Sbjct: 10024878 cagcggctcggctccgccttcttcttcc 10024851
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>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold
          Length = 1756392

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 140     cctcctcctccaggacctgc 159
               ||||||||||||||||||||
Sbjct: 1016418 cctcctcctccaggacctgc 1016437
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>gb|AC016906.7| Homo sapiens BAC clone RP11-436E24 from 2, complete sequence
          Length = 183045

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 478    tcaaagatcttgctgccaat 497
              ||||||||||||||||||||
Sbjct: 162581 tcaaagatcttgctgccaat 162600
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>gb|AF231056.1|AF231056 Homo sapiens BRG1-Associated Factor 250a (BAF250a) mRNA, complete
           cds
          Length = 7697

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 cgggcctcgcggggctccgc 182
           ||||||||||||||||||||
Sbjct: 267 cgggcctcgcggggctccgc 248
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>ref|XM_216340.3| PREDICTED: Rattus norvegicus AT rich interactive domain 1A (Swi1
           like) (predicted) (Arid1a_predicted), mRNA
          Length = 8527

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 cgggcctcgcggggctccgc 182
           ||||||||||||||||||||
Sbjct: 259 cgggcctcgcggggctccgc 240
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 221     gcgccggtgccgccgccggccgag 244
               |||||||||||||||| |||||||
Sbjct: 3114014 gcgccggtgccgccgcaggccgag 3114037
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>dbj|AK059264.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-A11, full
           insert sequence
          Length = 1189

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 182 cagccgctcgcctccgccttcttcttcc 209
           |||| ||||| |||||||||||||||||
Sbjct: 245 cagcggctcggctccgccttcttcttcc 218
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>dbj|AP005858.1| Mus musculus genomic DNA, chromosome 2 clone:B478C13, complete sequence
          Length = 174714

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 215    ccatctgcgccggtgccgccgccggccg 242
              |||||||||||| ||||||| |||||||
Sbjct: 160017 ccatctgcgccgctgccgcctccggccg 160044
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 155     cctgcggccgggcctcgcggggct 178
               |||||||||||||| |||||||||
Sbjct: 1593785 cctgcggccgggccgcgcggggct 1593808
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 182      cagccgctcgcctccgccttcttcttcc 209
                |||| ||||| |||||||||||||||||
Sbjct: 10030917 cagcggctcggctccgccttcttcttcc 10030890
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>emb|AL844144.10| Mouse DNA sequence from clone RP23-204D17 on chromosome 2, complete
              sequence
          Length = 178965

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 215    ccatctgcgccggtgccgccgccggccg 242
              |||||||||||| ||||||| |||||||
Sbjct: 176155 ccatctgcgccgctgccgcctccggccg 176128


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,080,886
Number of Sequences: 3902068
Number of extensions: 5080886
Number of successful extensions: 101616
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100518
Number of HSP's gapped (non-prelim): 1098
length of query: 574
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 551
effective length of database: 17,143,297,704
effective search space: 9445957034904
effective search space used: 9445957034904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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