ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart21f06 |
|---|---|
| Clone Library Name | barley_pub |
>E134_MAIZE (Q9ZT66) Endo-1,3;1,4-beta-D-glucanase precursor (EC 3.2.1.-)| Length = 303 Score = 132 bits (331), Expect = 1e-30 Identities = 76/149 (51%), Positives = 98/149 (65%), Gaps = 5/149 (3%) Frame = +2 Query: 170 ATPQCCADPPTLNPAGGE----GKVV-DSFGGITAYVSGARESKAAVVLISDVFGFEAPN 334 A QC +PP + G + G+VV D GG+ AYVSGA S AVVL SDVFG+EAP Sbjct: 25 AHSQCLDNPPDRSIHGRQLAEAGEVVHDLPGGLRAYVSGAASSSRAVVLASDVFGYEAPL 84 Query: 335 LRKIADKVASSGYLVVVPDFLHGDPYVPENADRPIQVWLKEHAPGKAFEEAKPVIAALKE 514 LR+I DKVA +GY VVVPDFL GD Y+ + + WL+ H+P KA E+AKP+ AALK+ Sbjct: 85 LRQIVDKVAKAGYFVVVPDFLKGD-YLDDK--KNFTEWLEAHSPVKAAEDAKPLFAALKK 141 Query: 515 QGVSTVGAAGYCWGAKVVAELAKANEIHA 601 +G S V GYCWG K+ E+ K +++ A Sbjct: 142 EGKS-VAVGGYCWGGKLSVEVGKTSDVKA 169
>YB4E_SCHPO (O14359) Hypothetical protein C30D10.14 in chromosome II| Length = 249 Score = 68.2 bits (165), Expect = 2e-11 Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 10/126 (7%) Frame = +2 Query: 221 EGKVVDSFGGITAYVSGARESKAAVVLISDVFGFEAPNLRKIADKVASSGYLVVVPDFLH 400 +GK +++FGG+T YV G+ + ++ D+FG + +++ ADK+A G+ V +PDFL Sbjct: 21 KGKEIENFGGLTTYVVGSTSNTRVLIGFMDIFGL-SDQIKEGADKLADDGFTVYLPDFLE 79 Query: 401 GDPY--------VPENADRPIQVWLKEHAPGKAFEEAKPVIAALK-EQGVS-TVGAAGYC 550 G P PE+ + +P + + V+ A++ G + T+G G+C Sbjct: 80 GKPLPVTALPPKTPEDQKLCNDFFSTRISPNLHWPKLAKVVEAVRANHGPNVTIGTYGFC 139 Query: 551 WGAKVV 568 WGAKV+ Sbjct: 140 WGAKVL 145
>YAE9_YEAST (P39721) Protein YAL049C| Length = 246 Score = 67.0 bits (162), Expect = 4e-11 Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 4/113 (3%) Frame = +2 Query: 248 GITAYVSGARESKAAVVLI-SDVFGFEAPNLRKIADKVASSGYLVVVPDFLHGDPYVPEN 424 G+ Y +G+ K V++I +DV+G + N+ ADK AS+GY+V VPD L GD + Sbjct: 29 GLDTYAAGSTSPKEKVIVILTDVYGNKFNNVLLTADKFASAGYMVFVPDILFGDAI---S 85 Query: 425 ADRPI--QVWLKEHAPGKAFEEAKPVIAALK-EQGVSTVGAAGYCWGAKVVAE 574 +D+PI W + H+P + + LK E +G GYC+GAK + Sbjct: 86 SDKPIDRDAWFQRHSPEVTKKIVDGFMKLLKLEYDPKFIGVVGYCFGAKFAVQ 138
>DLHH_AQUAE (O67802) Putative carboxymethylenebutenolidase (EC 3.1.1.45)| (Dienelactone hydrolase) (DLH) Length = 231 Score = 40.0 bits (92), Expect = 0.005 Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 6/116 (5%) Frame = +2 Query: 251 ITAYVSGARESKAAVVLISDVFGFEAP--NLRKIADKVASSGYLVVVPDFLHGDPYV--P 418 + Y++ + + AV++ + +G E+P N+++I DK+A G++ PDF G Y P Sbjct: 14 VRGYIATPKWAGPAVLVFHEWWGLESPLSNIKEICDKLADEGFVAFAPDFYKGQ-YADNP 72 Query: 419 ENADRPIQVWLKEHAP--GKAFEEAKPVIAALKEQGVSTVGAAGYCWGAKVVAELA 580 ++A + + ++ + F+ + + + VG G+C G + A Sbjct: 73 DDAGKLMTEMFEKRMDEVDRIFQASVEFVKECRYTYPKKVGITGFCCGGTLAMYFA 128
>DLHH_METEX (P71505) Putative carboxymethylenebutenolidase precursor (EC| 3.1.1.45) (Dienelactone hydrolase) (DLH) Length = 291 Score = 34.3 bits (77), Expect = 0.29 Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 7/123 (5%) Frame = +2 Query: 218 GEGKVVDSFGGITAYVSGARESKA--AVVLISDVFGFEAPNLRKIADKVASSGYLVVVPD 391 GE K+ G I AY + E ++++ ++FG +++ + ++A GY + P+ Sbjct: 54 GEVKIPMQDGVIPAYRAMPAEGGPFPTILVVQEIFGVHE-HIKDVCRRLAKLGYFALAPE 112 Query: 392 FL--HGDPYVPENADRPIQVWLKEHAPGKAFEEAKPVIAALKEQG---VSTVGAAGYCWG 556 GD + + + + + + + +A K G + +G G+CWG Sbjct: 113 LYARQGDVSTLTDIQQIVSEVVSKVPDDQVMSDLDAAVAFAKGTGKADTARLGITGFCWG 172 Query: 557 AKV 565 ++ Sbjct: 173 GRI 175
>DLHH_AZOBR (Q43914) Putative carboxymethylenebutenolidase (EC 3.1.1.45)| (Dienelactone hydrolase) (DLH) Length = 231 Score = 32.0 bits (71), Expect = 1.4 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Frame = +2 Query: 209 PAGGEGKVVDSFGGITAYVSGARESKAAVVLISDVFGFEAPNLRKIADKVASSGYLVVVP 388 PAG +G SF A +G + VV I ++FG +R + D A+ G+L V P Sbjct: 7 PAGDDG----SFSAYVAKPAGGGPAPGLVV-IQEIFGVNQV-MRDLCDAFAAQGWLAVCP 60 Query: 389 D-FLHGDPYVPENADRPIQVWLKEHAPGKAFEEAK 490 D F +P V + D+ + W + A ++ K Sbjct: 61 DLFWRQEPGV-QITDKTQEEWNRAFALMNGMDQDK 94
>SYV_BRUSU (Q8G0Y3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 910 Score = 32.0 bits (71), Expect = 1.4 Identities = 23/79 (29%), Positives = 40/79 (50%) Frame = +2 Query: 278 ESKAAVVLISDVFGFEAPNLRKIADKVASSGYLVVVPDFLHGDPYVPENADRPIQVWLKE 457 E KA +V + + F A ++I + + GYL + D H P+ + PI+ +L + Sbjct: 328 ELKALIVELDGMDRFAAR--KRIVELMDERGYLEKIDDHTHAVPH-GDRGGVPIEPYLTD 384 Query: 458 HAPGKAFEEAKPVIAALKE 514 A E AKP +AA+++ Sbjct: 385 QWYVNAGELAKPAMAAVRD 403
>SYV_BRUME (Q8YGX8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 910 Score = 32.0 bits (71), Expect = 1.4 Identities = 23/79 (29%), Positives = 40/79 (50%) Frame = +2 Query: 278 ESKAAVVLISDVFGFEAPNLRKIADKVASSGYLVVVPDFLHGDPYVPENADRPIQVWLKE 457 E KA +V + + F A ++I + + GYL + D H P+ + PI+ +L + Sbjct: 328 ELKALIVELDGMDRFAAR--KRIVELMDERGYLEKIDDHTHAVPH-GDRGGVPIEPYLTD 384 Query: 458 HAPGKAFEEAKPVIAALKE 514 A E AKP +AA+++ Sbjct: 385 QWYVNAGELAKPAMAAVRD 403
>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) (P145) Length = 1229 Score = 30.8 bits (68), Expect = 3.2 Identities = 22/70 (31%), Positives = 27/70 (38%) Frame = +2 Query: 161 GRMATPQCCADPPTLNPAGGEGKVVDSFGGITAYVSGARESKAAVVLISDVFGFEAPNLR 340 G AT P + PA G V SFG T+ GA A+ S VFG P+ Sbjct: 1018 GLKATASAFGAPASSQPAFGGSTAVFSFGAATSSGFGATTQTASSGSSSSVFGSTTPSPF 1077 Query: 341 KIADKVASSG 370 A +G Sbjct: 1078 TFGGSAAPAG 1087
>SYV_RHILO (Q98LB1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 927 Score = 30.8 bits (68), Expect = 3.2 Identities = 19/59 (32%), Positives = 30/59 (50%) Frame = +2 Query: 338 RKIADKVASSGYLVVVPDFLHGDPYVPENADRPIQVWLKEHAPGKAFEEAKPVIAALKE 514 +KI + + G+L V H P+ + PI+ +L E A E AKP IA+++E Sbjct: 345 KKIVELMEEGGFLEKVEPHRHAVPH-GDRGGVPIEPFLTEQWYANAAELAKPAIASVRE 402
>CEND3_HUMAN (Q8WWN8) Centaurin-delta 3 (Cnt-d3) (Arf-GAP, Rho-GAP, ankyrin repeat| and pleckstrin homology domain-containing protein 3) Length = 1544 Score = 29.6 bits (65), Expect = 7.0 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = +1 Query: 112 SYPSQPQSPGTSGLGTRQDGYP 177 S PS PQSP +GL T+ G+P Sbjct: 1507 SQPSSPQSPSPTGLPTQTPGFP 1528
>SALA_BACSU (P50863) Protein mrp homolog salA| Length = 352 Score = 29.3 bits (64), Expect = 9.2 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = +2 Query: 194 PPTLNPAGGEGKVVDSFGGITAYVSGARESKAAVVLISDVFGFEAPNLRKIADKVASSG 370 P L A G+G V S + +S AR K ++ +D++GF P++ I + G Sbjct: 106 PVFLAVASGKGGVGKSTVSVNLAISLARLGKKVGLIDADIYGFSVPDMMGITVRPTIEG 164
>SMC5_SCHPO (O13710) Structural maintenance of chromosome 5 (DNA repair protein| spr18) (SMC partner of rad18) Length = 1065 Score = 29.3 bits (64), Expect = 9.2 Identities = 12/46 (26%), Positives = 22/46 (47%) Frame = -3 Query: 455 PLTTLVLVCRRFQVHMDPHVRNLAPQLNIQTKRLYRLSSSDSALQT 318 P LV +C ++H P + P ++ +RL++ D L+T Sbjct: 541 PEVVLVALCHMLKIHQIPIAKRELPPASVNALNNFRLANGDPVLKT 586 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,722,965 Number of Sequences: 219361 Number of extensions: 1146763 Number of successful extensions: 3905 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3805 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3900 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
