Clone Name | bart21f06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK101551.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048O15, full insert sequence Length = 1127 Score = 389 bits (196), Expect = e-105 Identities = 373/432 (86%) Strand = Plus / Plus Query: 166 gatggctaccccgcagtgctgcgcggacccgccgacgctcaaccccgccggcggcgaggg 225 |||||| | |||||||||||||||| |||| |||||||| ||||| |||||||| ||||| Sbjct: 216 gatggcgagcccgcagtgctgcgcgaacccaccgacgctgaacccggccggcggggaggg 275 Query: 226 caaggtcgtggacagcttcggcgggatcacggcgtacgtctccggcgcccgagagtccaa 285 ||||| ||||| |||||||||||||||| |||||||||| |||||||| |||||||| Sbjct: 276 gaaggtggtggagagcttcggcgggatcaaggcgtacgtcgccggcgccgcggagtccaa 335 Query: 286 ggccgccgtcgtcctcatctccgacgtcttcgggtttgaagcgccgaatctgaggaagat 345 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 336 ggccgccgtcgtcctcatctccgatgtcttcgggtttgaagcgccgaacctgaggaagat 395 Query: 346 agccgataaagtcgcttcgtctggatatttagttgtggtgccagatttcttacatgggga 405 |||||| ||||| || ||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 396 agccgacaaagttgcctcgtctggatactttgttgtggtgccagatttcttacatgggga 455 Query: 406 tccatatgtacctgaaaacgccgacagaccaatacaagtgtggttaaaggagcatgcccc 465 ||| | |||||||||| | || | ||| | ||| ||||| |||| || |||| ||| Sbjct: 456 tcctttagtacctgaaagtactgagaaaccgtttcaaatgtggataaaagaacatggccc 515 Query: 466 gggaaaagcatttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatc 525 || ||||||||||||||||| ||||| ||||||| ||||| || || ||||||| || Sbjct: 516 ggacaaagcatttgaagaggcgaaaccaattattgccgctctgaaggagaaaggagtgtc 575 Query: 526 tactgttggggctgcaggttattgctggggtgcaaaggtggttgctgagctagcgaaagc 585 || | ||||||||| ||||||||||||||||||||||||||| | ||| ||| |||||| Sbjct: 576 tagtattggggctgtaggttattgctggggtgcaaaggtggtggtagagttagtgaaagc 635 Query: 586 taatgagatcca 597 | |||||||||| Sbjct: 636 tcatgagatcca 647
>dbj|AK073623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048N15, full insert sequence Length = 1127 Score = 389 bits (196), Expect = e-105 Identities = 373/432 (86%) Strand = Plus / Plus Query: 166 gatggctaccccgcagtgctgcgcggacccgccgacgctcaaccccgccggcggcgaggg 225 |||||| | |||||||||||||||| |||| |||||||| ||||| |||||||| ||||| Sbjct: 216 gatggcgagcccgcagtgctgcgcgaacccaccgacgctgaacccggccggcggggaggg 275 Query: 226 caaggtcgtggacagcttcggcgggatcacggcgtacgtctccggcgcccgagagtccaa 285 ||||| ||||| |||||||||||||||| |||||||||| |||||||| |||||||| Sbjct: 276 gaaggtggtggagagcttcggcgggatcaaggcgtacgtcgccggcgccgcggagtccaa 335 Query: 286 ggccgccgtcgtcctcatctccgacgtcttcgggtttgaagcgccgaatctgaggaagat 345 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 336 ggccgccgtcgtcctcatctccgatgtcttcgggtttgaagcgccgaacctgaggaagat 395 Query: 346 agccgataaagtcgcttcgtctggatatttagttgtggtgccagatttcttacatgggga 405 |||||| ||||| || ||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 396 agccgacaaagttgcctcgtctggatactttgttgtggtgccagatttcttacatgggga 455 Query: 406 tccatatgtacctgaaaacgccgacagaccaatacaagtgtggttaaaggagcatgcccc 465 ||| | |||||||||| | || | ||| | ||| ||||| |||| || |||| ||| Sbjct: 456 tcctttagtacctgaaagtactgagaaaccgtttcaaatgtggataaaagaacatggccc 515 Query: 466 gggaaaagcatttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatc 525 || ||||||||||||||||| ||||| ||||||| ||||| || || ||||||| || Sbjct: 516 ggacaaagcatttgaagaggcgaaaccaattattgccgctctgaaggagaaaggagtgtc 575 Query: 526 tactgttggggctgcaggttattgctggggtgcaaaggtggttgctgagctagcgaaagc 585 || | ||||||||| ||||||||||||||||||||||||||| | ||| ||| |||||| Sbjct: 576 tagtattggggctgtaggttattgctggggtgcaaaggtggtggtagagttagtgaaagc 635 Query: 586 taatgagatcca 597 | |||||||||| Sbjct: 636 tcatgagatcca 647
>dbj|AK060876.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-A04, full insert sequence Length = 1014 Score = 389 bits (196), Expect = e-105 Identities = 373/432 (86%) Strand = Plus / Plus Query: 166 gatggctaccccgcagtgctgcgcggacccgccgacgctcaaccccgccggcggcgaggg 225 |||||| | |||||||||||||||| |||| |||||||| ||||| |||||||| ||||| Sbjct: 32 gatggcgagcccgcagtgctgcgcgaacccaccgacgctgaacccggccggcggggaggg 91 Query: 226 caaggtcgtggacagcttcggcgggatcacggcgtacgtctccggcgcccgagagtccaa 285 ||||| ||||| |||||||||||||||| |||||||||| |||||||| |||||||| Sbjct: 92 gaaggtggtggagagcttcggcgggatcaaggcgtacgtcgccggcgccgcggagtccaa 151 Query: 286 ggccgccgtcgtcctcatctccgacgtcttcgggtttgaagcgccgaatctgaggaagat 345 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 152 ggccgccgtcgtcctcatctccgatgtcttcgggtttgaagcgccgaacctgaggaagat 211 Query: 346 agccgataaagtcgcttcgtctggatatttagttgtggtgccagatttcttacatgggga 405 |||||| ||||| || ||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 212 agccgacaaagttgcctcgtctggatactttgttgtggtgccagatttcttacatgggga 271 Query: 406 tccatatgtacctgaaaacgccgacagaccaatacaagtgtggttaaaggagcatgcccc 465 ||| | |||||||||| | || | ||| | ||| ||||| |||| || |||| ||| Sbjct: 272 tcctttagtacctgaaagtactgagaaaccgtttcaaatgtggataaaagaacatggccc 331 Query: 466 gggaaaagcatttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatc 525 || ||||||||||||||||| ||||| ||||||| ||||| || || ||||||| || Sbjct: 332 ggacaaagcatttgaagaggcgaaaccaattattgccgctctgaaggagaaaggagtgtc 391 Query: 526 tactgttggggctgcaggttattgctggggtgcaaaggtggttgctgagctagcgaaagc 585 || | ||||||||| ||||||||||||||||||||||||||| | ||| ||| |||||| Sbjct: 392 tagtattggggctgtaggttattgctggggtgcaaaggtggtggtagagttagtgaaagc 451 Query: 586 taatgagatcca 597 | |||||||||| Sbjct: 452 tcatgagatcca 463
>gb|AY104092.1| Zea mays PCO081688 mRNA sequence Length = 1359 Score = 238 bits (120), Expect = 2e-59 Identities = 326/392 (83%), Gaps = 2/392 (0%) Strand = Plus / Plus Query: 179 cagtgctgcgcggacccgccgacgctcaaccccgccggcggcgagggcaaggtcgtggac 238 |||||||||| |||||||| | || ||||| ||| |||| |||||||||||||| ||| Sbjct: 330 cagtgctgcgataacccgccggccctgaacccggcctgcggggagggcaaggtcgtcgac 389 Query: 239 agcttcggcgggatcacggcgtacgtctccggcgcccga-gagtccaaggccgccgtcgt 297 |||||||||||| ||| ||| |||||| ||||| ||||| || ||||||||||||||||| Sbjct: 390 agcttcggcgggctcaaggcctacgtcgccggc-cccgaggactccaaggccgccgtcgt 448 Query: 298 cctcatctccgacgtcttcgggtttgaagcgccgaatctgaggaagatagccgataaagt 357 |||| | ||||||||||||| || |||||||||| ||||||||| |||||||| ||||| Sbjct: 449 cctcgttgccgacgtcttcggattcgaagcgccgattctgaggaacatagccgacaaagt 508 Query: 358 cgcttcgtctggatatttagttgtggtgccagatttcttacatggggatccatatgtacc 417 |||||||| || || || |||||||| ||||||||||| ||||||||||| |||||||| Sbjct: 509 tgcttcgtcagggtactttgttgtggtaccagatttctttcatggggatccttatgtacc 568 Query: 418 tgaaaacgccgacagaccaatacaagtgtggttaaaggagcatgccccgggaaaagcatt 477 ||| || || || | | |||| |||||| | ||| ||| | |||| ||||| || Sbjct: 569 tgagaatgctgagaagctcatacctgtgtggctgaagtcacatactccggaaaaagggtt 628 Query: 478 tgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatctactgttggggc 537 ||||||||||||||| |||||||| ||||| || || | ||||| ||| | ||||| || Sbjct: 629 tgaagaggcaaaaccagttattgcggctctaaaggagaagggagtgtctgccgttggagc 688 Query: 538 tgcaggttattgctggggtgcaaaggtggttg 569 |||||| |||||||||||||||||||| |||| Sbjct: 689 tgcagggtattgctggggtgcaaaggtcgttg 720
>gb|BT016986.1| Zea mays clone EK07D2304D04.c mRNA sequence Length = 1139 Score = 216 bits (109), Expect = 6e-53 Identities = 291/349 (83%), Gaps = 2/349 (0%) Strand = Plus / Plus Query: 222 agggcaaggtcgtggacagcttcggcgggatcacggcgtacgtctccggcgcccga-gag 280 ||||||||||||| ||||||||||||||| ||| ||| |||||| ||||| ||||| || Sbjct: 254 agggcaaggtcgtcgacagcttcggcgggctcaaggcctacgtcgccggc-cccgaggac 312 Query: 281 tccaaggccgccgtcgtcctcatctccgacgtcttcgggtttgaagcgccgaatctgagg 340 ||||||||||||||||||||| | ||||||||||||| || |||||||||| ||||||| Sbjct: 313 tccaaggccgccgtcgtcctcgttgccgacgtcttcggattcgaagcgccgattctgagg 372 Query: 341 aagatagccgataaagtcgcttcgtctggatatttagttgtggtgccagatttcttacat 400 || |||||||| ||||| |||||||| || || || |||||||| ||||||||||| ||| Sbjct: 373 aacatagccgacaaagttgcttcgtcagggtactttgttgtggtaccagatttctttcat 432 Query: 401 ggggatccatatgtacctgaaaacgccgacagaccaatacaagtgtggttaaaggagcat 460 |||||||| ||||||||||| || || || | | |||| |||||| | ||| ||| Sbjct: 433 ggggatccttatgtacctgagaatgctgagaagctcatacctgtgtggctgaagtcacat 492 Query: 461 gccccgggaaaagcatttgaagaggcaaaacctgttattgctgctctcaaagaacaagga 520 | |||| ||||| ||||||||||||||||| ||||| || ||||| || || | ||| Sbjct: 493 actccggaaaaagggtttgaagaggcaaaaccagttatcgcggctctaaaggagaaggga 552 Query: 521 gtatctactgttggggctgcaggttattgctggggtgcaaaggtggttg 569 || ||| | ||||| |||||||| |||||||||||||||||||| |||| Sbjct: 553 gtgtctgccgttggagctgcagggtattgctggggtgcaaaggtcgttg 601
>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01, complete sequence Length = 146303 Score = 176 bits (89), Expect = 5e-41 Identities = 137/153 (89%) Strand = Plus / Plus Query: 166 gatggctaccccgcagtgctgcgcggacccgccgacgctcaaccccgccggcggcgaggg 225 |||||| | |||||||||||||||| |||| |||||||| ||||| |||||||| ||||| Sbjct: 69627 gatggcgagcccgcagtgctgcgcgaacccaccgacgctgaacccggccggcggggaggg 69686 Query: 226 caaggtcgtggacagcttcggcgggatcacggcgtacgtctccggcgcccgagagtccaa 285 ||||| ||||| |||||||||||||||| |||||||||| |||||||| |||||||| Sbjct: 69687 gaaggtggtggagagcttcggcgggatcaaggcgtacgtcgccggcgccgcggagtccaa 69746 Query: 286 ggccgccgtcgtcctcatctccgacgtcttcgg 318 |||||||||||||||||||||||| |||||||| Sbjct: 69747 ggccgccgtcgtcctcatctccgatgtcttcgg 69779 Score = 105 bits (53), Expect = 2e-19 Identities = 77/85 (90%) Strand = Plus / Plus Query: 338 aggaagatagccgataaagtcgcttcgtctggatatttagttgtggtgccagatttctta 397 |||||||||||||| ||||| || ||||||||||| || ||||||||||||||||||||| Sbjct: 70861 aggaagatagccgacaaagttgcctcgtctggatactttgttgtggtgccagatttctta 70920 Query: 398 catggggatccatatgtacctgaaa 422 ||||||||||| | |||||||||| Sbjct: 70921 catggggatcctttagtacctgaaa 70945 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Plus Query: 470 aaagcatttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatctact 529 ||||||||||||||||| ||||| ||||||| ||||| || || ||||||| |||| | Sbjct: 71892 aaagcatttgaagaggcgaaaccaattattgccgctctgaaggagaaaggagtgtctagt 71951 Query: 530 gttggggctgcaggttattgctggggtg 557 ||||||||| ||||||||||||||||| Sbjct: 71952 attggggctgtaggttattgctggggtg 71979 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 281 tccaaggccgccgtcgtcctcatctccgacg 311 ||||||||||||||||||||||||||||||| Sbjct: 75550 tccaaggccgccgtcgtcctcatctccgacg 75580 Score = 58.0 bits (29), Expect = 4e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 473 gcatttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatctactgtt 532 |||||||||||||||||||| |||||||| ||||| || || | |||| |||| | Sbjct: 77239 gcatttgaagaggcaaaaccagttattgccgctctaaaggagaagggagcatctttcatc 77298 Query: 533 ggggctgcaggttattgctggggtg 557 ||||||||||||||||| ||||||| Sbjct: 77299 ggggctgcaggttattgttggggtg 77323 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 338 aggaagatagccgataaagtcgcttcgtctggatatttagttgtggtgccagatttctta 397 ||||||||||| || || || |||| || ||| || || |||||||||||||||||| | Sbjct: 76416 aggaagatagcagacaaggttgctttgtttggttacttcgttgtggtgccagatttcctt 76475 Query: 398 catggggatccata 411 |||||||| ||||| Sbjct: 76476 catggggacccata 76489 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Plus Query: 528 ctgttggggctgcaggttattgctggggtg 557 ||||||||| || ||||||||||||||||| Sbjct: 131857 ctgttggggttggaggttattgctggggtg 131886 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 gggtttgaagcgccgaatctgagg 340 ||||||||||||||||| |||||| Sbjct: 69879 gggtttgaagcgccgaacctgagg 69902
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 176 bits (89), Expect = 5e-41 Identities = 137/153 (89%) Strand = Plus / Plus Query: 166 gatggctaccccgcagtgctgcgcggacccgccgacgctcaaccccgccggcggcgaggg 225 |||||| | |||||||||||||||| |||| |||||||| ||||| |||||||| ||||| Sbjct: 19265552 gatggcgagcccgcagtgctgcgcgaacccaccgacgctgaacccggccggcggggaggg 19265611 Query: 226 caaggtcgtggacagcttcggcgggatcacggcgtacgtctccggcgcccgagagtccaa 285 ||||| ||||| |||||||||||||||| |||||||||| |||||||| |||||||| Sbjct: 19265612 gaaggtggtggagagcttcggcgggatcaaggcgtacgtcgccggcgccgcggagtccaa 19265671 Query: 286 ggccgccgtcgtcctcatctccgacgtcttcgg 318 |||||||||||||||||||||||| |||||||| Sbjct: 19265672 ggccgccgtcgtcctcatctccgatgtcttcgg 19265704 Score = 105 bits (53), Expect = 2e-19 Identities = 77/85 (90%) Strand = Plus / Plus Query: 338 aggaagatagccgataaagtcgcttcgtctggatatttagttgtggtgccagatttctta 397 |||||||||||||| ||||| || ||||||||||| || ||||||||||||||||||||| Sbjct: 19266786 aggaagatagccgacaaagttgcctcgtctggatactttgttgtggtgccagatttctta 19266845 Query: 398 catggggatccatatgtacctgaaa 422 ||||||||||| | |||||||||| Sbjct: 19266846 catggggatcctttagtacctgaaa 19266870 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Plus Query: 470 aaagcatttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatctact 529 ||||||||||||||||| ||||| ||||||| ||||| || || ||||||| |||| | Sbjct: 19267817 aaagcatttgaagaggcgaaaccaattattgccgctctgaaggagaaaggagtgtctagt 19267876 Query: 530 gttggggctgcaggttattgctggggtg 557 ||||||||| ||||||||||||||||| Sbjct: 19267877 attggggctgtaggttattgctggggtg 19267904 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 281 tccaaggccgccgtcgtcctcatctccgacg 311 ||||||||||||||||||||||||||||||| Sbjct: 19271475 tccaaggccgccgtcgtcctcatctccgacg 19271505 Score = 58.0 bits (29), Expect = 4e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 473 gcatttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatctactgtt 532 |||||||||||||||||||| |||||||| ||||| || || | |||| |||| | Sbjct: 19273164 gcatttgaagaggcaaaaccagttattgccgctctaaaggagaagggagcatctttcatc 19273223 Query: 533 ggggctgcaggttattgctggggtg 557 ||||||||||||||||| ||||||| Sbjct: 19273224 ggggctgcaggttattgttggggtg 19273248 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 338 aggaagatagccgataaagtcgcttcgtctggatatttagttgtggtgccagatttctta 397 ||||||||||| || || || |||| || ||| || || |||||||||||||||||| | Sbjct: 19272341 aggaagatagcagacaaggttgctttgtttggttacttcgttgtggtgccagatttcctt 19272400 Query: 398 catggggatccata 411 |||||||| ||||| Sbjct: 19272401 catggggacccata 19272414 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Plus Query: 528 ctgttggggctgcaggttattgctggggtg 557 ||||||||| || ||||||||||||||||| Sbjct: 19327782 ctgttggggttggaggttattgctggggtg 19327811 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 gggtttgaagcgccgaatctgagg 340 ||||||||||||||||| |||||| Sbjct: 19265804 gggtttgaagcgccgaacctgagg 19265827
>dbj|AK101507.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044O16, full insert sequence Length = 1039 Score = 117 bits (59), Expect = 4e-23 Identities = 113/131 (86%) Strand = Plus / Plus Query: 281 tccaaggccgccgtcgtcctcatctccgacgtcttcgggtttgaagcgccgaatctgagg 340 ||||||||||||||||||||||||||||||| ||| || |||||||| || || |||||| Sbjct: 161 tccaaggccgccgtcgtcctcatctccgacgcctttggctttgaagccccaaacctgagg 220 Query: 341 aagatagccgataaagtcgcttcgtctggatatttagttgtggtgccagatttcttacat 400 |||||||| || || || |||| || ||| || || |||||||||||||||||| | ||| Sbjct: 221 aagatagcagacaaggttgctttgtttggttacttcgttgtggtgccagatttccttcat 280 Query: 401 ggggatccata 411 ||||| ||||| Sbjct: 281 ggggacccata 291 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 473 gcatttgaagaggcaaaacctgttattgctgctctcaaagaacaaggagtatctactgtt 532 |||||||||||||||||||| |||||||| ||||| || || | |||| |||| | Sbjct: 350 gcatttgaagaggcaaaaccagttattgccgctctaaaggagaagggagcatctttcatc 409 Query: 533 ggggctgcaggttattgctggggtgcaaaggt 564 ||||||||||||||||| |||||||||||||| Sbjct: 410 ggggctgcaggttattgttggggtgcaaaggt 441
>gb|AY104719.1| Zea mays PCO136367 mRNA sequence Length = 1169 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Plus Query: 289 cgccgtcgtcctcatctccgacgtcttcgggt 320 ||||||||||||| ||||||||||||||||| Sbjct: 284 cgccgtcgtcctcgcctccgacgtcttcgggt 315
>gb|AF072326.1|AF072326 Zea mays endo-1,3-1,4-beta-D-glucanase mRNA, complete cds Length = 1020 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Plus Query: 289 cgccgtcgtcctcatctccgacgtcttcgggt 320 ||||||||||||| ||||||||||||||||| Sbjct: 274 cgccgtcgtcctcgcctccgacgtcttcgggt 305
>gb|AC108872.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0079P23, complete sequence Length = 125090 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 289 cgccgtcgtcctcatctccgacg 311 ||||||||||||||||||||||| Sbjct: 28918 cgccgtcgtcctcatctccgacg 28940
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 212 gccggcggcgagggcaaggtcgt 234 ||||||||||||||||||||||| Sbjct: 413848 gccggcggcgagggcaaggtcgt 413826
>gb|U58749.1| Caenorhabditis elegans cosmid B0496, complete sequence Length = 40466 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 466 gggaaaagcatttgaagaggcaa 488 ||||||||||||||||||||||| Sbjct: 8043 gggaaaagcatttgaagaggcaa 8021
>gb|AC103758.14| Homo sapiens chromosome 8, clone CTD-3135A9, complete sequence Length = 235357 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 117 tccctcccagccccagtccccaggaac 143 |||||||||||||||| |||||||||| Sbjct: 221321 tccctcccagccccagaccccaggaac 221347
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 289 cgccgtcgtcctcatctccgacg 311 ||||||||||||||||||||||| Sbjct: 25090454 cgccgtcgtcctcatctccgacg 25090476
>gb|AC129918.10| Homo sapiens chromosome 8, clone CTD-2132E17, complete sequence Length = 142854 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 117 tccctcccagccccagtccccaggaac 143 |||||||||||||||| |||||||||| Sbjct: 60927 tccctcccagccccagaccccaggaac 60953
>dbj|AK107541.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-H09, full insert sequence Length = 1126 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 524 tctactgttggggctgcaggttattgctggggtgcaaaggtgg 566 ||||||||||| | || |||||| |||||||||| |||||||| Sbjct: 604 tctactgttggagttggaggttactgctggggtggaaaggtgg 646
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 289 cgccgtcgtcctcatctccgacg 311 ||||||||||||||||||||||| Sbjct: 25401473 cgccgtcgtcctcatctccgacg 25401495
>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0035J16, complete sequence Length = 170233 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Plus Query: 528 ctgttggggctgcaggttattgctggggtg 557 ||||||||| || ||||||||||||||||| Sbjct: 31131 ctgttggggttggaggttattgctggggtg 31160
>gb|AC106772.3| Homo sapiens chromosome 5 clone RP11-310P5, complete sequence Length = 161984 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 469 aaaagcatttgaagaggcaaaa 490 |||||||||||||||||||||| Sbjct: 43893 aaaagcatttgaagaggcaaaa 43914
>ref|XM_540104.2| PREDICTED: Canis familiaris similar to tudor domain containing 6 (LOC482990), mRNA Length = 6867 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 471 aagcatttgaagaggcaaaac 491 ||||||||||||||||||||| Sbjct: 495 aagcatttgaagaggcaaaac 475
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 cagccccagtccccaggaacc 144 ||||||||||||||||||||| Sbjct: 7496800 cagccccagtccccaggaacc 7496780
>ref|XM_480883.1| Oryza sativa (japonica cultivar-group), mRNA Length = 982 Score = 40.1 bits (20), Expect = 8.2 Identities = 56/68 (82%) Strand = Plus / Plus Query: 290 gccgtcgtcctcatctccgacgtcttcgggtttgaagcgccgaatctgaggaagatagcc 349 |||||||||||| ||||||||||| ||| || |||||||| |||||| | ||||| Sbjct: 186 gccgtcgtcctcgcctccgacgtctacggtttccaagcgccgttactgaggcaaatagct 245 Query: 350 gataaagt 357 |||||||| Sbjct: 246 gataaagt 253
>ref|XM_480132.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1404 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 211 cgccggcggcgagggcaaggtcgtggac 238 |||||||||||||||| ||| ||||||| Sbjct: 1170 cgccggcggcgagggcgaggacgtggac 1197
>gb|AC108401.19| Mus musculus chromosome 12, clone RP24-98A23, complete sequence Length = 213381 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 cgtatccctcccagccccag 132 |||||||||||||||||||| Sbjct: 162663 cgtatccctcccagccccag 162644
>gb|AC146797.2| Xenopus tropicalis clone CH216-118J4, complete sequence Length = 154944 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 aagaggcaaaacctgttatt 499 |||||||||||||||||||| Sbjct: 32724 aagaggcaaaacctgttatt 32743
>emb|BX927318.10| Zebrafish DNA sequence from clone DKEY-159N16 in linkage group 23, complete sequence Length = 149430 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 gttgctgagctagcgaaagc 585 |||||||||||||||||||| Sbjct: 2629 gttgctgagctagcgaaagc 2648
>gb|AC122832.4| Mus musculus BAC clone RP23-179D3 from 12, complete sequence Length = 224056 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 cgtatccctcccagccccag 132 |||||||||||||||||||| Sbjct: 212398 cgtatccctcccagccccag 212417
>emb|CR382326.12| Zebrafish DNA sequence from clone DKEYP-50A7 in linkage group 14, complete sequence Length = 133943 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 gttgctgagctagcgaaagc 585 |||||||||||||||||||| Sbjct: 106106 gttgctgagctagcgaaagc 106125
>ref|XM_500714.1| Yarrowia lipolytica CLIB122, YALI0B10296g predicted mRNA Length = 1779 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 cctcatctccgacgtcttcg 317 |||||||||||||||||||| Sbjct: 235 cctcatctccgacgtcttcg 216
>gb|AC008082.12| Homo sapiens 3 BAC RP11-73N1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 171619 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gatccatatgtacctgaaaa 423 |||||||||||||||||||| Sbjct: 154122 gatccatatgtacctgaaaa 154141
>emb|BX284112.25| Zebrafish DNA sequence from clone DKEYP-75A7 in linkage group 21, complete sequence Length = 216476 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 gttgctgagctagcgaaagc 585 |||||||||||||||||||| Sbjct: 156645 gttgctgagctagcgaaagc 156664
>gb|AC182766.4| Pan troglodytes BAC clone CH251-433B9 from chromosome 6, complete sequence Length = 173138 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 actgttggggctgcaggtta 546 |||||||||||||||||||| Sbjct: 10353 actgttggggctgcaggtta 10334
>dbj|AB240147.1| Chlorella pyrenoidosa mRNA for enolase, partial cds Length = 933 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 201 cgctcaaccccgccggcggcgagggcaaggtc 232 ||||||| |||||||| |||||||||||||| Sbjct: 308 cgctcaaggccgccggctgcgagggcaaggtc 339
>ref|NM_136097.2| Drosophila melanogaster CG17572-RA (CG17572), mRNA Length = 1280 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 cgccggcggcgagggcaagg 230 |||||||||||||||||||| Sbjct: 1085 cgccggcggcgagggcaagg 1104
>gb|AY089692.1| Drosophila melanogaster RH69521 full insert cDNA Length = 1359 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 cgccggcggcgagggcaagg 230 |||||||||||||||||||| Sbjct: 1087 cgccggcggcgagggcaagg 1106
>gb|AC096763.2| Homo sapiens BAC clone RP11-625A6 from 4, complete sequence Length = 168710 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 gcatgccccgggaaaagcat 476 |||||||||||||||||||| Sbjct: 51712 gcatgccccgggaaaagcat 51693
>ref|XM_688258.1| PREDICTED: Danio rerio hypothetical protein LOC564939 (LOC564939), mRNA Length = 849 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 gttgctgagctagcgaaagc 585 |||||||||||||||||||| Sbjct: 124 gttgctgagctagcgaaagc 143
>ref|XM_691489.1| PREDICTED: Danio rerio hypothetical protein LOC568175 (LOC568175), mRNA Length = 624 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 gttgctgagctagcgaaagc 585 |||||||||||||||||||| Sbjct: 124 gttgctgagctagcgaaagc 143
>emb|BX571958.11| Zebrafish DNA sequence from clone DKEY-240E12 in linkage group 22, complete sequence Length = 221392 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 gttgctgagctagcgaaagc 585 |||||||||||||||||||| Sbjct: 215510 gttgctgagctagcgaaagc 215491
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 211 cgccggcggcgagggcaaggtcgtggac 238 |||||||||||||||| ||| ||||||| Sbjct: 2994320 cgccggcggcgagggcgaggacgtggac 2994293
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 211 cgccggcggcgagggcaaggtcgtggac 238 |||||||||||||||| ||| ||||||| Sbjct: 12810621 cgccggcggcgagggcgaggacgtggac 12810594
>gb|AC090885.1|AC090885 Homo sapiens chromosome 3 clone RP11-270I6 map 3p, complete sequence Length = 193264 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 ctcccagccccagtccccag 139 |||||||||||||||||||| Sbjct: 25511 ctcccagccccagtccccag 25530
>gb|AC090956.1|AC090956 Homo sapiens chromosome 3 clone RP11-659G4 map 3p, complete sequence Length = 202844 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctcccagccccagtccccag 139 |||||||||||||||||||| Sbjct: 25417 ctcccagccccagtccccag 25398
>gb|AC009205.6|AC009205 Drosophila melanogaster, chromosome 2L, region 36E-37C, BAC clone BACR04C20, complete sequence Length = 166918 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 cgccggcggcgagggcaagg 230 |||||||||||||||||||| Sbjct: 111020 cgccggcggcgagggcaagg 111001
>gb|AC026218.5|AC026218 Homo sapiens chromosome 3 clone RP11-813N23 map 3p, complete sequence Length = 198597 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctcccagccccagtccccag 139 |||||||||||||||||||| Sbjct: 38456 ctcccagccccagtccccag 38437
>dbj|AP004811.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0019A05 Length = 144255 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 211 cgccggcggcgagggcaaggtcgtggac 238 |||||||||||||||| ||| ||||||| Sbjct: 111398 cgccggcggcgagggcgaggacgtggac 111371
>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1349_D05 Length = 174478 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 211 cgccggcggcgagggcaaggtcgtggac 238 |||||||||||||||| ||| ||||||| Sbjct: 45043 cgccggcggcgagggcgaggacgtggac 45016
>dbj|AK110659.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-169-E12, full insert sequence Length = 1077 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 211 cgccggcggcgagggcaaggtcgtggac 238 |||||||||||||||| ||| ||||||| Sbjct: 583 cgccggcggcgagggcgaggacgtggac 610
>dbj|AK059758.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E06, full insert sequence Length = 980 Score = 40.1 bits (20), Expect = 8.2 Identities = 56/68 (82%) Strand = Plus / Plus Query: 290 gccgtcgtcctcatctccgacgtcttcgggtttgaagcgccgaatctgaggaagatagcc 349 |||||||||||| ||||||||||| ||| || |||||||| |||||| | ||||| Sbjct: 184 gccgtcgtcctcgcctccgacgtctacggtttccaagcgccgttactgaggcaaatagct 243 Query: 350 gataaagt 357 |||||||| Sbjct: 244 gataaagt 251
>gb|AC005126.4|AC005126 Drosophila melanogaster, chromosome 2L, region 37B9-37C7, P1 clone DS04995, complete sequence Length = 63571 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 cgccggcggcgagggcaagg 230 |||||||||||||||||||| Sbjct: 62975 cgccggcggcgagggcaagg 62956
>gb|AC007176.1|AC007176 Drosophila melanogaster, chromosome 2L, region 37C1-46B2, BAC clones DS04472 and BACR48O01, complete sequence Length = 160005 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 cgccggcggcgagggcaagg 230 |||||||||||||||||||| Sbjct: 203 cgccggcggcgagggcaagg 184
>gb|AE003661.3| Drosophila melanogaster chromosome 2L, section 70 of 83 of the complete sequence Length = 265558 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 cgccggcggcgagggcaagg 230 |||||||||||||||||||| Sbjct: 161726 cgccggcggcgagggcaagg 161707
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 cctcatctccgacgtcttcg 317 |||||||||||||||||||| Sbjct: 1413791 cctcatctccgacgtcttcg 1413810
>gb|DQ084248.1| Uncultured bacterium BAC-L1N9, complete sequence of BAC Length = 25361 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 accccgccggcggcgagggc 226 |||||||||||||||||||| Sbjct: 2141 accccgccggcggcgagggc 2122
>emb|AL731814.13| Mouse DNA sequence from clone RP23-109J20 on chromosome 2, complete sequence Length = 210821 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 gaaagctaatgagatccatg 599 |||||||||||||||||||| Sbjct: 207545 gaaagctaatgagatccatg 207564
>gb|AC069271.5| Homo sapiens chromosome 3 clone RP11-715I4 map 3p, complete sequence Length = 229408 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctcccagccccagtccccag 139 |||||||||||||||||||| Sbjct: 4555 ctcccagccccagtccccag 4536
>gb|AC069246.6| Homo sapiens chromosome 3 clone RP11-221A8 map 3p, complete sequence Length = 175121 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctcccagccccagtccccag 139 |||||||||||||||||||| Sbjct: 173209 ctcccagccccagtccccag 173190 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,007,908 Number of Sequences: 3902068 Number of extensions: 4007908 Number of successful extensions: 74129 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73672 Number of HSP's gapped (non-prelim): 457 length of query: 604 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 581 effective length of database: 17,143,297,704 effective search space: 9960255966024 effective search space used: 9960255966024 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)