ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart21f03 |
|---|---|
| Clone Library Name | barley_pub |
>AN32A_HUMAN (P39687) Acidic leucine-rich nuclear phosphoprotein 32 family| member A (Potent heat-stable protein phosphatase 2A inhibitor I1PP2A) (Acidic nuclear phosphoprotein pp32) (Cerebellar leucine-rich acidic nuclear protein) (HLA-DR-associated prote Length = 249 Score = 65.5 bits (158), Expect = 1e-10 Identities = 48/141 (34%), Positives = 62/141 (43%), Gaps = 1/141 (0%) Frame = +3 Query: 177 KTLTLDGAVKSSTGRLPSPSLFDRFPSLEELSVAGXXXXXXXXXXXXXXXXXXXXXDNRL 356 K L LD + +S+ G+L L D F LE LS DNR+ Sbjct: 20 KELVLDNS-RSNEGKLEG--LTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRV 76 Query: 357 SGAGSLAAVAESCGGTIRHLDLGNNRFXXXXXXX-XXXXXGVESLDLFQCPVAKLKGYRE 533 SG L +AE C + HL+L N+ ++SLDLF C V L YRE Sbjct: 77 SGG--LEVLAEKCPN-LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRE 133 Query: 534 KVFALVPSLKYLDGVDAEGND 596 VF L+P L YLDG D + + Sbjct: 134 NVFKLLPQLTYLDGYDRDDKE 154
>AN32A_MOUSE (O35381) Acidic leucine-rich nuclear phosphoprotein 32 family| member A (Potent heat-stable protein phosphatase 2A inhibitor I1PP2A) (Acidic nuclear phosphoprotein pp32) (Cerebellar leucine-rich acidic nuclear protein) Length = 247 Score = 63.9 bits (154), Expect = 3e-10 Identities = 46/141 (32%), Positives = 61/141 (43%), Gaps = 1/141 (0%) Frame = +3 Query: 177 KTLTLDGAVKSSTGRLPSPSLFDRFPSLEELSVAGXXXXXXXXXXXXXXXXXXXXXDNRL 356 K L LD KS G++ L D F LE LS +NR+ Sbjct: 20 KELVLDNC-KSIEGKIEG--LTDEFEELEFLSTINVGLTSISNLPKLNKLKKLELSENRI 76 Query: 357 SGAGSLAAVAESCGGTIRHLDLGNNRFXXXXXXX-XXXXXGVESLDLFQCPVAKLKGYRE 533 SG L +AE C ++HL+L N+ ++SLDLF C V L YRE Sbjct: 77 SG--DLEVLAEKCPN-LKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNAYRE 133 Query: 534 KVFALVPSLKYLDGVDAEGND 596 VF L+P + YLDG D + + Sbjct: 134 NVFKLLPQVMYLDGYDRDNKE 154
>AN32A_BOVIN (P51122) Acidic leucine-rich nuclear phosphoprotein 32 family| member A (Leucine-rich acidic nuclear protein) (Fragments) Length = 173 Score = 63.9 bits (154), Expect = 3e-10 Identities = 47/141 (33%), Positives = 61/141 (43%), Gaps = 1/141 (0%) Frame = +3 Query: 177 KTLTLDGAVKSSTGRLPSPSLFDRFPSLEELSVAGXXXXXXXXXXXXXXXXXXXXXDNRL 356 K L LD +S+ G++ L D F LE LS DNR+ Sbjct: 17 KELVLDNC-RSNEGKIEG--LTDEFEELEFLSTINVGLTSVANLPKLNKLKKLELSDNRI 73 Query: 357 SGAGSLAAVAESCGGTIRHLDLGNNRFXXXXXXX-XXXXXGVESLDLFQCPVAKLKGYRE 533 SG L +AE C + HL+L N+ ++SLDLF C V L YRE Sbjct: 74 SGG--LEVLAEKCPN-LTHLNLRGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRE 130 Query: 534 KVFALVPSLKYLDGVDAEGND 596 VF L+P L YLDG D + + Sbjct: 131 NVFKLLPQLTYLDGYDRDDKE 151
>AN32A_RAT (P49911) Acidic leucine-rich nuclear phosphoprotein 32 family| member A (Leucine-rich acidic nuclear protein) Length = 247 Score = 62.8 bits (151), Expect = 8e-10 Identities = 45/141 (31%), Positives = 61/141 (43%), Gaps = 1/141 (0%) Frame = +3 Query: 177 KTLTLDGAVKSSTGRLPSPSLFDRFPSLEELSVAGXXXXXXXXXXXXXXXXXXXXXDNRL 356 K L LD +S G++ L D F LE LS +NR+ Sbjct: 20 KELVLDNC-RSIEGKIEG--LTDEFEELEFLSTINVGLTSISNLPKLNKLKKLELSENRI 76 Query: 357 SGAGSLAAVAESCGGTIRHLDLGNNRFXXXXXXX-XXXXXGVESLDLFQCPVAKLKGYRE 533 SG L +AE C ++HL+L N+ ++SLDLF C V L YRE Sbjct: 77 SG--DLEVLAEKCPN-LKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNAYRE 133 Query: 534 KVFALVPSLKYLDGVDAEGND 596 VF L+P + YLDG D + + Sbjct: 134 NVFKLLPQVMYLDGYDRDNKE 154
>AN32E_HUMAN (Q9BTT0) Acidic leucine-rich nuclear phosphoprotein 32 family| member E (LANP-like protein) (LANP-L) Length = 268 Score = 57.8 bits (138), Expect = 2e-08 Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 1/121 (0%) Frame = +3 Query: 237 LFDRFPSLEELSVAGXXXXXXXXXXXXXXXXXXXXXDNRLSGAGSLAAVAESCGGTIRHL 416 L D F LE LS+A DN +SG L +AE C + +L Sbjct: 37 LNDTFKELEFLSMANVELSSLARLPSLNKLRKLELSDNIISGG--LEVLAEKCPN-LTYL 93 Query: 417 DLGNNRFXXXXXXXXXXXX-GVESLDLFQCPVAKLKGYREKVFALVPSLKYLDGVDAEGN 593 +L N+ ++SLDLF C + L+ YRE +F L+ + YLDG D E N Sbjct: 94 NLSGNKIKDLSTVEALQNLKNLKSLDLFNCEITNLEDYRESIFELLQQITYLDGFDQEDN 153 Query: 594 D 596 + Sbjct: 154 E 154
>AN32E_MOUSE (P97822) Acidic leucine-rich nuclear phosphoprotein 32 family| member E (LANP-like protein) (LANP-L) (Cerebellar postnatal development protein 1) Length = 260 Score = 57.8 bits (138), Expect = 2e-08 Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 1/121 (0%) Frame = +3 Query: 237 LFDRFPSLEELSVAGXXXXXXXXXXXXXXXXXXXXXDNRLSGAGSLAAVAESCGGTIRHL 416 L D F LE LS+A DN +SG L +AE C + +L Sbjct: 37 LNDTFKELEFLSMANVELSSLARLPSLNKLRKLELSDNIISGG--LEVLAEKCPN-LTYL 93 Query: 417 DLGNNRFXXXXXXXXXXXX-GVESLDLFQCPVAKLKGYREKVFALVPSLKYLDGVDAEGN 593 +L N+ ++SLDLF C + L+ YRE +F L+ + YLDG D E N Sbjct: 94 NLSGNKIKDLSTVEALQNLKNLKSLDLFNCEITNLEDYRESIFELLQQITYLDGFDQEDN 153 Query: 594 D 596 + Sbjct: 154 E 154
>AN32B_SHEEP (Q6A1I3) Acidic leucine-rich nuclear phosphoprotein 32 family| member B (Leucine-rich acidic nuclear protein) (LAN) (Acidic protein rich in leucines) Length = 261 Score = 55.8 bits (133), Expect = 9e-08 Identities = 46/144 (31%), Positives = 62/144 (43%), Gaps = 1/144 (0%) Frame = +3 Query: 168 SAPKTLTLDGAVKSSTGRLPSPSLFDRFPSLEELSVAGXXXXXXXXXXXXXXXXXXXXXD 347 +A + L LD KS+ G++ L F +LE LS+ D Sbjct: 17 AAVRELVLDNC-KSNDGKIEG--LTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSD 73 Query: 348 NRLSGAGSLAAVAESCGGTIRHLDLGNNRFXXXXXXXXXXXXG-VESLDLFQCPVAKLKG 524 NR+ G L +AE + HL+L N+ ++SLDLF C V L Sbjct: 74 NRI--CGGLDMLAEKLPN-LTHLNLSGNKLKDIGTLEPLKKLECLKSLDLFNCEVTNLND 130 Query: 525 YREKVFALVPSLKYLDGVDAEGND 596 YRE VF L+P L YLDG D E + Sbjct: 131 YRESVFKLLPQLTYLDGYDREDRE 154
>AN32B_HUMAN (Q92688) Acidic leucine-rich nuclear phosphoprotein 32 family| member B (PHAPI2 protein) (Silver-stainable protein SSP29) (Acidic protein rich in leucines) Length = 251 Score = 53.9 bits (128), Expect = 4e-07 Identities = 45/144 (31%), Positives = 62/144 (43%), Gaps = 1/144 (0%) Frame = +3 Query: 168 SAPKTLTLDGAVKSSTGRLPSPSLFDRFPSLEELSVAGXXXXXXXXXXXXXXXXXXXXXD 347 +A + L LD KS+ G++ L F +LE LS+ + Sbjct: 17 AAVRELVLDNC-KSNDGKIEG--LTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSE 73 Query: 348 NRLSGAGSLAAVAESCGGTIRHLDLGNNRFXXXXXXXXXXXXG-VESLDLFQCPVAKLKG 524 NR+ G L +AE + HL+L N+ ++SLDLF C V L Sbjct: 74 NRIFGG--LDMLAEKLPN-LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 130 Query: 525 YREKVFALVPSLKYLDGVDAEGND 596 YRE VF L+P L YLDG D E + Sbjct: 131 YRESVFKLLPQLTYLDGYDREDQE 154
>AN32C_HUMAN (O43423) Acidic leucine-rich nuclear phosphoprotein 32 family| member C (Tumorigenic protein pp32r1) Length = 234 Score = 43.5 bits (101), Expect = 5e-04 Identities = 41/133 (30%), Positives = 53/133 (39%), Gaps = 1/133 (0%) Frame = +3 Query: 177 KTLTLDGAVKSSTGRLPSPSLFDRFPSLEELSVAGXXXXXXXXXXXXXXXXXXXXXDNRL 356 K L LD + +S+ G+L + L D F LE LS L Sbjct: 20 KELALDNS-RSNEGKLEA--LTDEFEELEFLSKINGGLTSISDLPKLKLRKL------EL 70 Query: 357 SGAGSLAAVAESCGGTIRHLDLGNNRFXXXXXXX-XXXXXGVESLDLFQCPVAKLKGYRE 533 +G L +AE C + HL L N+ ++SLDLF C V L Y E Sbjct: 71 RVSGGLEVLAEKCPN-LTHLYLSGNKIKDLSTIEPLKQLENLKSLDLFNCEVTNLNDYGE 129 Query: 534 KVFALVPSLKYLD 572 VF L+ L YLD Sbjct: 130 NVFKLLLQLTYLD 142
>AN32D_HUMAN (O95626) Acidic leucine-rich nuclear phosphoprotein 32 family| member D (Tumorigenic protein pp32r2) Length = 131 Score = 34.3 bits (77), Expect = 0.29 Identities = 35/118 (29%), Positives = 44/118 (37%), Gaps = 1/118 (0%) Frame = +3 Query: 177 KTLTLDGAVKSSTGRLPSPSLFDRFPSLEELSVAGXXXXXXXXXXXXXXXXXXXXXDNRL 356 K L LD + +S+ G+L L D F LE L+ NR Sbjct: 20 KELFLDNS-QSNEGKLEG--LADEFEELELLNTINIGLSSIANLPKLNKLKKLELSSNRA 76 Query: 357 SGAGSLAAVAESCGGTIRHLDLGNNRFXXXXXXX-XXXXXGVESLDLFQCPVAKLKGY 527 S L +AE C I HL+L N+ +ESLDLF C V L Y Sbjct: 77 SVG--LEVLAEKCPNLI-HLNLSGNKIKDLSTIEPLKKLENLESLDLFTCEVTNLNNY 131
>LRRC6_HUMAN (Q86X45) Leucine-rich repeat-containing protein 6 (Leucine-rich| testis-specific protein) (Testis-specific leucine-rich repeat protein) Length = 466 Score = 34.3 bits (77), Expect = 0.29 Identities = 17/43 (39%), Positives = 26/43 (60%) Frame = +3 Query: 477 VESLDLFQCPVAKLKGYREKVFALVPSLKYLDGVDAEGNDRLE 605 ++ L L P A YRE V A +P LK+LDG + E ++R++ Sbjct: 115 LKELFLMGNPCASFDHYREFVVATLPQLKWLDGKEIEPSERIK 157
>ARGB_PHOPR (Q6LVG9) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK)| (N-acetyl-L-glutamate 5-phosphotransferase) Length = 260 Score = 33.9 bits (76), Expect = 0.38 Identities = 19/51 (37%), Positives = 27/51 (52%) Frame = -2 Query: 569 QVLQAGNQRKHLLPVPLELGDGALEQVQRLDPERRERGELLDGGEAVVSQV 417 ++LQ + + V L L DG L Q+ LDPE G+ G A+VSQ+ Sbjct: 87 KMLQGRAIKSGVAAVGLSLADGGLCQITELDPELGSVGKAAPGNGALVSQI 137
>TMKL1_ARATH (P33543) Putative kinase-like protein TMKL1 precursor| Length = 674 Score = 32.7 bits (73), Expect = 0.84 Identities = 19/49 (38%), Positives = 24/49 (48%) Frame = +3 Query: 348 NRLSGAGSLAAVAESCGGTIRHLDLGNNRFXXXXXXXXXXXXGVESLDL 494 N LSG A+ S G ++ LDLG N+F GV+SLDL Sbjct: 182 NNLSGVLPEPALPNSTCGNLQVLDLGGNKFSGEFPEFITRFKGVKSLDL 230
>LRRC6_MACFA (Q4R3F0) Leucine-rich repeat-containing protein 6| Length = 466 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/43 (39%), Positives = 25/43 (58%) Frame = +3 Query: 477 VESLDLFQCPVAKLKGYREKVFALVPSLKYLDGVDAEGNDRLE 605 ++ L L P A YRE V A +P LK+LDG E ++R++ Sbjct: 115 LKELFLMGNPCAFFDHYREFVVATLPQLKWLDGKGIEPSERIK 157
>RM49_MOUSE (Q9CQ40) Mitochondrial 39S ribosomal protein L49 (L49mt) (MRP-L49)| Length = 166 Score = 32.0 bits (71), Expect = 1.4 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = -1 Query: 588 PRHRHHPSTSSWEPAQTPSP 529 P+H+H+P+ S W+P + P P Sbjct: 61 PKHKHYPTPSGWQPPRDPLP 80
>RU2A_CANGA (Q6FV04) U2 small nuclear ribonucleoprotein A' (U2 snRNP-A')| Length = 266 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = +3 Query: 477 VESLDLFQCPVAKLKGYREKVFALVPSLKYLD 572 V L L P+ L YR+++ ALVPSL+ LD Sbjct: 124 VRDLVLIGNPICHLSEYRQRILALVPSLEVLD 155
>LRRC6_MOUSE (O88978) Leucine-rich repeat-containing protein 6 (Leucine-rich| testis-specific protein) (Testis-specific leucine-rich repeat protein) Length = 473 Score = 31.6 bits (70), Expect = 1.9 Identities = 15/43 (34%), Positives = 25/43 (58%) Frame = +3 Query: 477 VESLDLFQCPVAKLKGYREKVFALVPSLKYLDGVDAEGNDRLE 605 ++ L L P A GYR+ V + LK+LDG + E ++R++ Sbjct: 115 LKELFLMGNPCADFDGYRQFVVVTLQQLKWLDGKEIERSERIQ 157
>RM49_PONPY (Q5R8X0) Mitochondrial 39S ribosomal protein L49 (L49mt) (MRP-L49)| Length = 166 Score = 31.6 bits (70), Expect = 1.9 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = -1 Query: 588 PRHRHHPSTSSWEPAQTPSP 529 P+H H+P+ S W+P + P P Sbjct: 61 PKHEHYPTPSGWQPPRDPPP 80
>RM49_MACFA (Q4R5K7) Mitochondrial 39S ribosomal protein L49 (L49mt) (MRP-L49)| Length = 166 Score = 31.6 bits (70), Expect = 1.9 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = -1 Query: 588 PRHRHHPSTSSWEPAQTPSP 529 P+H H+P+ S W+P + P P Sbjct: 61 PKHEHYPTPSGWQPPRDPPP 80
>RM49_HUMAN (Q13405) Mitochondrial 39S ribosomal protein L49 (L49mt) (MRP-L49)| (Protein NOF1) (Neighbor of FAU) (NOF) Length = 166 Score = 31.6 bits (70), Expect = 1.9 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = -1 Query: 588 PRHRHHPSTSSWEPAQTPSP 529 P+H H+P+ S W+P + P P Sbjct: 61 PKHEHYPTPSGWQPPRDPPP 80
>ATPB_LACLC (Q9RAU0) ATP synthase beta chain (EC 3.6.3.14)| Length = 469 Score = 30.4 bits (67), Expect = 4.2 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = -2 Query: 554 GNQRKHLLPVPLELGDGALEQVQRLDPERRERG-ELLDGGEAV 429 G + K L V LELGDGA+ + + RG E+LD G+AV Sbjct: 39 GLKTKITLEVALELGDGAVRTIAMESTDGLTRGLEVLDTGKAV 81
>ATPB_LACLA (Q9CES0) ATP synthase beta chain (EC 3.6.3.14)| Length = 469 Score = 30.4 bits (67), Expect = 4.2 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = -2 Query: 554 GNQRKHLLPVPLELGDGALEQVQRLDPERRERG-ELLDGGEAV 429 G + K L V LELGDGA+ + + RG E+LD G+AV Sbjct: 39 GLKTKITLEVALELGDGAVRTIAMESTDGLTRGLEVLDTGKAV 81
>RU2A_CANAL (Q5A449) U2 small nuclear ribonucleoprotein A' (U2 snRNP-A')| Length = 233 Score = 30.0 bits (66), Expect = 5.4 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +3 Query: 405 IRHLDLGNNRFXXXXXXXXXXXXGVESLDLFQCPVAKLKGYREKVFALVPSLKYLD 572 I + L NN +E+L L P+ +++ YR + L+PSLK LD Sbjct: 90 ITSITLFNNNIYQFQKSFKDKFPKLETLILLGNPITEMENYRYFIIWLIPSLKVLD 145
>RM49_BOVIN (Q5EA71) Mitochondrial 39S ribosomal protein L49 (L49mt) (MRP-L49)| Length = 166 Score = 29.6 bits (65), Expect = 7.1 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = -1 Query: 588 PRHRHHPSTSSWEPAQTPSP 529 P+H H+P+ W+P + P P Sbjct: 61 PKHEHYPTPCGWQPPRDPPP 80 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,861,394 Number of Sequences: 219361 Number of extensions: 533165 Number of successful extensions: 2233 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2178 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2232 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
