Clone Name | bart21f01 |
---|---|
Clone Library Name | barley_pub |
>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)| Length = 262 Score = 100 bits (250), Expect = 2e-21 Identities = 70/159 (44%), Positives = 72/159 (45%), Gaps = 8/159 (5%) Frame = +2 Query: 104 MEDERSTQSYQGAEV-DQVEVTDRXXXXXXXXXXXXXXXXXXXXXXVTGMXXXXXXX--- 271 MEDERSTQSYQG E +QVEVTDR VTGM Sbjct: 1 MEDERSTQSYQGGEAAEQVEVTDRGLLGNLLGKKKAEEDKEKEEELVTGMEKVSVEEPEV 60 Query: 272 -XXXXXDGEKKETLFSKLHRXXXXXXXXXXXXXXXXVIDENXXXXXXXXXXXXXXXXXXX 448 DGEKKETLFSKLHR VID+N Sbjct: 61 KKEEHEDGEKKETLFSKLHRSSSSSSSSSDEEEEE-VIDDNGEVIKRKKKKGLKEKLQGK 119 Query: 449 XXXXXDNEAEHVTGLPAPMAPASVQT---HHDTDVVVEK 556 D E EHVTGLPAP APASVQT HHDTDVVVEK Sbjct: 120 LPGHKDTEGEHVTGLPAPAAPASVQTHGGHHDTDVVVEK 158
>DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-related formin-2)| (DRF2) (mDia3) Length = 1098 Score = 31.2 bits (69), Expect = 2.1 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = -1 Query: 176 GPCPSPPPDRPQLPGMTGCSSHPP 105 GPCP PPP P P + G PP Sbjct: 556 GPCPPPPPPPPPPPPLPGVVPPPP 579
>PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane intrinsic| protein 1.2) (OsPIP1.2) Length = 282 Score = 30.8 bits (68), Expect = 2.7 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -1 Query: 554 SRRRRRCHGESEQTRGPSVRVGPSRAQP 471 SRRRRRC + +RGPS G + P Sbjct: 29 SRRRRRCSSQGSSSRGPSTAQGSPSSWP 56
>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) Length = 1248 Score = 30.4 bits (67), Expect = 3.5 Identities = 13/23 (56%), Positives = 13/23 (56%) Frame = -1 Query: 173 PCPSPPPDRPQLPGMTGCSSHPP 105 P P PPP P LPG T S PP Sbjct: 601 PPPPPPPPPPPLPGGTAISPPPP 623
>RDRP_IBDVA (P12918) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 878 Score = 29.3 bits (64), Expect = 7.8 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%) Frame = -2 Query: 100 RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 11 R+ S LK T+GS +K+ +S DYW+L+CG L Sbjct: 282 RELSALLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 317
>ETBR2_RAT (Q9QYC5) Endothelin B receptor-like protein 2 precursor (ETBR-LP-2)| (G-protein coupled receptor 37-like 1) (G-protein coupled receptor CNS2) Length = 481 Score = 29.3 bits (64), Expect = 7.8 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +3 Query: 54 CFL*LPRVFSCTDRSRSWRMRGAPSHTRELRSIR 155 C+ LP +F+ T + +WR+RG P E R+ R Sbjct: 316 CYFCLPILFTVTCQLVTWRVRGPPGRKPECRAGR 349
>ETBR2_MOUSE (Q99JG2) Endothelin B receptor-like protein 2 precursor (ETBR-LP-2)| (G-protein coupled receptor 37-like 1) Length = 481 Score = 29.3 bits (64), Expect = 7.8 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +3 Query: 54 CFL*LPRVFSCTDRSRSWRMRGAPSHTRELRSIR 155 C+ LP +F+ T + +WR+RG P E R+ R Sbjct: 316 CYFCLPILFTVTCQLVTWRVRGPPGRKPECRAGR 349
>ETBR2_HUMAN (O60883) Endothelin B receptor-like protein 2 precursor (ETBR-LP-2)| (G-protein coupled receptor 37-like 1) Length = 481 Score = 29.3 bits (64), Expect = 7.8 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +3 Query: 54 CFL*LPRVFSCTDRSRSWRMRGAPSHTRELRS 149 C+ LP +F+ T + +WR+RG P E R+ Sbjct: 316 CYFCLPILFTVTCQLVTWRVRGPPGRKSECRA 347
>RDRP_IBDV (Q9Q6Q5) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 881 Score = 29.3 bits (64), Expect = 7.8 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%) Frame = -2 Query: 100 RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 11 R+ S LK T+GS +K+ +S DYW+L+CG L Sbjct: 283 RELSTLLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 318 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,163,448 Number of Sequences: 219361 Number of extensions: 606919 Number of successful extensions: 3078 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 2437 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3014 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)