ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart21e04 |
|---|---|
| Clone Library Name | barley_pub |
>HME1_HUMAN (Q05925) Homeobox protein engrailed-1 (Hu-En-1)| Length = 392 Score = 35.8 bits (81), Expect = 0.030 Identities = 21/58 (36%), Positives = 27/58 (46%) Frame = -1 Query: 244 GARGRGGEATSAMTVSHDTFLSPAPALAPPHTRLSRSTCGIAHRHQLRTHPPPPPREH 71 GA G G + +V +SP PA PP + +AH L HPPPPP +H Sbjct: 34 GASGSSGSGSDGDSVP----VSPQPA--PPSPPAAPCLPPLAHHPHLPPHPPPPPPQH 85
>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3262 Score = 32.0 bits (71), Expect = 0.44 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 9/58 (15%) Frame = -1 Query: 217 TSAMTVSHDTFLSPAPALAPPHTR---LSRSTCGIAHRHQLRT----HPPP--PPREH 71 T A T L+P PALAPP ++ LS ST ++ L + PPP PPR+H Sbjct: 2795 TRAPPPDSPTSLAPTPALAPPASQASTLSPSTSSMSANQALSSLKAVGPPPATPPRKH 2852
>HME1_MOUSE (P09065) Homeobox protein engrailed-1 (Mo-En-1)| Length = 401 Score = 31.6 bits (70), Expect = 0.57 Identities = 19/55 (34%), Positives = 23/55 (41%) Frame = -1 Query: 244 GARGRGGEATSAMTVSHDTFLSPAPALAPPHTRLSRSTCGIAHRHQLRTHPPPPP 80 GA G G ++ VS P APP + +AH L HPPPPP Sbjct: 34 GASGSSGSDGDSVPVS--------PQPAPPSPPAAPCLPPLAHHPHLPPHPPPPP 80
>SAYP_DROME (Q9VWF2) Supporter of activation of yellow protein (Protein enhancer| of yellow 3) Length = 2006 Score = 30.8 bits (68), Expect = 0.97 Identities = 18/53 (33%), Positives = 22/53 (41%) Frame = -1 Query: 238 RGRGGEATSAMTVSHDTFLSPAPALAPPHTRLSRSTCGIAHRHQLRTHPPPPP 80 + R E S M + T P P AP TRL RST + + P PP Sbjct: 1460 KSRKDERQSCMDLQTFTINQPQPRTAPTCTRLERSTSDLIRAVAEEANIPAPP 1512
>CEBPA_BOVIN (O02754) CCAAT/enhancer-binding protein alpha (C/EBP alpha)| Length = 353 Score = 30.4 bits (67), Expect = 1.3 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Frame = -1 Query: 178 PAPA-LAPPHTRLSRSTCGIAHRHQLRTHPPPPP 80 P PA LA PH + + CG H HP PPP Sbjct: 192 PPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPP 225
>CEBPA_HUMAN (P49715) CCAAT/enhancer-binding protein alpha (C/EBP alpha)| Length = 358 Score = 30.4 bits (67), Expect = 1.3 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Frame = -1 Query: 178 PAPA-LAPPHTRLSRSTCGIAHRHQLRTHPPPPP 80 P PA LA PH + + CG H HP PPP Sbjct: 196 PPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPP 229
>MAML2_HUMAN (Q8IZL2) Mastermind-like protein 2 (Mam-2)| Length = 1153 Score = 29.6 bits (65), Expect = 2.2 Identities = 19/58 (32%), Positives = 24/58 (41%) Frame = -1 Query: 244 GARGRGGEATSAMTVSHDTFLSPAPALAPPHTRLSRSTCGIAHRHQLRTHPPPPPREH 71 GAR + G+ T A + T P P APP + +T PPPPP H Sbjct: 85 GAR-KAGKHTKATATAATTTAPPPPPAAPPAASQAAATAA----------PPPPPDYH 131
>FOXJ3_HUMAN (Q9UPW0) Forkhead box protein J3| Length = 622 Score = 29.3 bits (64), Expect = 2.8 Identities = 14/39 (35%), Positives = 16/39 (41%) Frame = -1 Query: 196 HDTFLSPAPALAPPHTRLSRSTCGIAHRHQLRTHPPPPP 80 H SP P PH + H+HQ TH PPP Sbjct: 407 HSQLQSPHPQHPSPHQHIQHHP---NHQHQTLTHQAPPP 442 Score = 29.3 bits (64), Expect = 2.8 Identities = 16/58 (27%), Positives = 26/58 (44%) Frame = -1 Query: 244 GARGRGGEATSAMTVSHDTFLSPAPALAPPHTRLSRSTCGIAHRHQLRTHPPPPPREH 71 G G + + +++SH + P P+ PPH G+ Q HP P P++H Sbjct: 356 GLNTTGSNSVAQVSLSHPQ-MHPQPSPHPPHR-----PHGLPQHPQRSPHPAPHPQQH 407
>SUPT3_HUMAN (O75486) Transcription initiation protein SPT3 homolog (SPT3-like| protein) Length = 399 Score = 29.3 bits (64), Expect = 2.8 Identities = 20/53 (37%), Positives = 26/53 (49%) Frame = -1 Query: 238 RGRGGEATSAMTVSHDTFLSPAPALAPPHTRLSRSTCGIAHRHQLRTHPPPPP 80 RG G T+ T + SP+P +AP H SR T ++ H L PPP P Sbjct: 5 RGSQGRGTAEATAN-----SPSPPIAPSH---SRVTFSLSTLHTL--SPPPRP 47
>AFF2_PONPY (Q7YQM1) AF4/FMR2 family member 2 (Fragile X mental retardation| protein 2 homolog) (Protein FMR-2) Length = 1272 Score = 29.3 bits (64), Expect = 2.8 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 7/43 (16%) Frame = -1 Query: 184 LSPAPALAPPHTRLSRSTCGIAHRHQLRTHPPP-------PPR 77 +SPAP PP+TR + S+ R + + PPP PPR Sbjct: 845 ISPAPPHKPPNTRENNSSRRANRRKEEKLFPPPLSPLPEDPPR 887
>AFF2_PANTR (Q7YQM2) AF4/FMR2 family member 2 (Fragile X mental retardation| protein 2 homolog) (Protein FMR-2) Length = 1272 Score = 29.3 bits (64), Expect = 2.8 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 7/43 (16%) Frame = -1 Query: 184 LSPAPALAPPHTRLSRSTCGIAHRHQLRTHPPP-------PPR 77 +SPAP PP+TR + S+ R + + PPP PPR Sbjct: 845 ISPAPPHKPPNTRENNSSRRANRRKEEKLFPPPLSPLPEDPPR 887
>AFF2_HUMAN (P51816) AF4/FMR2 family member 2 (Fragile X mental retardation 2| protein) (Protein FMR-2) (FMR2P) (Ox19 protein) (Fragile X E mental retardation syndrome protein) Length = 1311 Score = 29.3 bits (64), Expect = 2.8 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 7/43 (16%) Frame = -1 Query: 184 LSPAPALAPPHTRLSRSTCGIAHRHQLRTHPPP-------PPR 77 +SPAP PP+TR + S+ R + + PPP PPR Sbjct: 884 ISPAPPHKPPNTRENNSSRRANRRKEEKLFPPPLSPLPEDPPR 926
>MMPLC_MYCTU (Q50585) Putative membrane protein mmpL12| Length = 1146 Score = 29.3 bits (64), Expect = 2.8 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -1 Query: 181 SPAPALAPPHTRLSRSTCGIAHRHQLRTHPPPPPRE 74 +P PA PPHT++ R+T G A + ++ P P + Sbjct: 1016 APIPAPKPPHTKVVRNTNGHASKAATKSVPNGKPAD 1051
>WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 505 Score = 29.3 bits (64), Expect = 2.8 Identities = 19/54 (35%), Positives = 22/54 (40%) Frame = -1 Query: 241 ARGRGGEATSAMTVSHDTFLSPAPALAPPHTRLSRSTCGIAHRHQLRTHPPPPP 80 ARGRG S AP APP SR + + R +PPPPP Sbjct: 304 ARGRGAPPPPP---------SRAPTAAPPPPPPSRPSVAVPPPPPNRMYPPPPP 348
>CEBPA_MOUSE (P53566) CCAAT/enhancer-binding protein alpha (C/EBP alpha)| Length = 359 Score = 28.9 bits (63), Expect = 3.7 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = -1 Query: 181 SPAPALAPPHTRLSRSTCGIAHRHQLRTHPPPPP 80 SPA LA PH + + CG H HP PPP Sbjct: 193 SPAH-LAAPHLQFQIAHCGQTTMHLQPGHPTPPP 225
>CEBPA_RAT (P05554) CCAAT/enhancer-binding protein alpha (C/EBP alpha)| Length = 358 Score = 28.9 bits (63), Expect = 3.7 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = -1 Query: 181 SPAPALAPPHTRLSRSTCGIAHRHQLRTHPPPPP 80 SPA LA PH + + CG H HP PPP Sbjct: 193 SPAH-LAAPHLQFQIAHCGQTTMHLQPGHPTPPP 225
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 28.5 bits (62), Expect = 4.8 Identities = 13/39 (33%), Positives = 15/39 (38%) Frame = -1 Query: 196 HDTFLSPAPALAPPHTRLSRSTCGIAHRHQLRTHPPPPP 80 H P PPH + H+HQ H PPPP Sbjct: 408 HSQLQPPHSQHPPPHQHIQHHP---NHQHQTLAHQPPPP 443
>SOT1_SPIOL (Q41364) 2-oxoglutarate/malate translocator, chloroplast precursor| Length = 569 Score = 28.5 bits (62), Expect = 4.8 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = -1 Query: 220 ATSAMTVSHDTFLSPAPALAPPHTRLSRSTCGIAHRHQLRTHPPPPP 80 A+ + ++SH FLSP P+L PH S T+PPPPP Sbjct: 43 ASKSPSLSHKHFLSP-PSLLLPHKLKPISASS-------PTNPPPPP 81
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 24.6 bits (52), Expect(2) = 5.7 Identities = 10/21 (47%), Positives = 11/21 (52%) Frame = -1 Query: 142 SRSTCGIAHRHQLRTHPPPPP 80 S +T H Q HPPPPP Sbjct: 15 STTTTRDHHHQQHHHHPPPPP 35 Score = 21.9 bits (45), Expect(2) = 5.7 Identities = 6/9 (66%), Positives = 8/9 (88%) Frame = -1 Query: 97 HPPPPPREH 71 HPP PP++H Sbjct: 72 HPPRPPQDH 80
>YMX3_CAEEL (P34511) Hypothetical protein K06H7.3| Length = 618 Score = 28.1 bits (61), Expect = 6.3 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -2 Query: 117 TATSYVRTHLPRPVNTAWQREEQEQE 40 TA ++ RTH+P P EEQE+E Sbjct: 497 TAGNWARTHIPEPKKKVELTEEQERE 522
>HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC| stretch-binding protein) (CSBP) Length = 463 Score = 27.7 bits (60), Expect = 8.2 Identities = 18/53 (33%), Positives = 21/53 (39%) Frame = -1 Query: 235 GRGGEATSAMTVSHDTFLSPAPALAPPHTRLSRSTCGIAHRHQLRTHPPPPPR 77 GRGG M S + +P PP R G + L PPPPPR Sbjct: 267 GRGGRP---MPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPR 316
>HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| Length = 463 Score = 27.7 bits (60), Expect = 8.2 Identities = 18/53 (33%), Positives = 21/53 (39%) Frame = -1 Query: 235 GRGGEATSAMTVSHDTFLSPAPALAPPHTRLSRSTCGIAHRHQLRTHPPPPPR 77 GRGG M S + +P PP R G + L PPPPPR Sbjct: 267 GRGGRP---MPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPR 316
>HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K| Length = 463 Score = 27.7 bits (60), Expect = 8.2 Identities = 18/53 (33%), Positives = 21/53 (39%) Frame = -1 Query: 235 GRGGEATSAMTVSHDTFLSPAPALAPPHTRLSRSTCGIAHRHQLRTHPPPPPR 77 GRGG M S + +P PP R G + L PPPPPR Sbjct: 267 GRGGRP---MPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPR 316
>HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| (Transformation up-regulated nuclear protein) (TUNP) Length = 463 Score = 27.7 bits (60), Expect = 8.2 Identities = 18/53 (33%), Positives = 21/53 (39%) Frame = -1 Query: 235 GRGGEATSAMTVSHDTFLSPAPALAPPHTRLSRSTCGIAHRHQLRTHPPPPPR 77 GRGG M S + +P PP R G + L PPPPPR Sbjct: 267 GRGGRP---MPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPR 316
>ARGI2_ARATH (Q9ZPF5) Probable arginase (EC 3.5.3.1)| Length = 344 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%) Frame = -1 Query: 229 GGEATSAMT---VSHDTFLSPAPALAPPHTR 146 G +AT+A+ + H++ PALAPPH R Sbjct: 62 GAKATTALLGVPLGHNSSFLEGPALAPPHVR 92 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,857,176 Number of Sequences: 219361 Number of extensions: 375930 Number of successful extensions: 2033 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 1876 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2017 length of database: 80,573,946 effective HSP length: 56 effective length of database: 68,289,730 effective search space used: 1638953520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
