>gb|AF295599.1| Zea mays ribosomal protein s6 RPS6-2 (rps6-2) mRNA, complete cds
          Length = 1023

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                            
Query: 89  ccgcgagcttgcgcagcaacttcaccatgaagttgaacatcgcgaaccc 137
           ||||||||| |||| |||||  |||||||||||| ||||||||||||||
Sbjct: 43  ccgcgagctcgcgccgcaacgccaccatgaagttcaacatcgcgaaccc 91

>gb|AY103674.1| Zea mays PCO104001 mRNA sequence
          Length = 1198

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                            
Query: 89  ccgcgagcttgcgcagcaacttcaccatgaagttgaacatcgcgaaccc 137
           ||||||||| |||| |||||  |||||||||||| ||||||||||||||
Sbjct: 171 ccgcgagctcgcgccgcaacgccaccatgaagttcaacatcgcgaaccc 219

>ref|NM_189879.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1077

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 80  gctcgcggcccgcgagcttgcgcagcaacttcaccatgaagttgaacatcgcgaacccca 139
           |||||| ||||||||||| |||| ||  |   ||||||||||| |||||||||||||| |
Sbjct: 57  gctcgccgcccgcgagctcgcgccgcttcgcaaccatgaagttcaacatcgcgaacccga 116

               
Query: 140 ccac 143
           ||||
Sbjct: 117 ccac 120

>dbj|AK069465.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022D14, full
           insert sequence
          Length = 1078

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 80  gctcgcggcccgcgagcttgcgcagcaacttcaccatgaagttgaacatcgcgaacccca 139
           |||||| ||||||||||| |||| ||  |   ||||||||||| |||||||||||||| |
Sbjct: 58  gctcgccgcccgcgagctcgcgccgcttcgcaaccatgaagttcaacatcgcgaacccga 117

               
Query: 140 ccac 143
           ||||
Sbjct: 118 ccac 121

>gb|U92045.1|ZMU92045 Zea mays ribosomal protein S6 RPS6-1 (rps6-1) mRNA, complete cds
          Length = 1039

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 111 caccatgaagttgaacatcgcgaaccc 137
           |||||||||||| ||||||||||||||
Sbjct: 66  caccatgaagttcaacatcgcgaaccc 92

>gb|AY453394.1| Glycine max ribosomal protein S6 (RPS6) mRNA, complete cds
          Length = 1020

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 115 atgaagttgaacatcgcgaaccccaccac 143
           |||||||| ||||||||||| ||||||||
Sbjct: 63  atgaagttcaacatcgcgaatcccaccac 91

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 13       ctcgccccaaaccctagcgct 33
                |||||||||||||||||||||
Sbjct: 41486372 ctcgccccaaaccctagcgct 41486352

>gb|AC155886.2| Medicago truncatula chromosome 7 BAC clone mth2-173o24, complete
             sequence
          Length = 119696

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 105   caacttcaccatgaagttgaa 125
             |||||||||||||||||||||
Sbjct: 77325 caacttcaccatgaagttgaa 77305

>dbj|AP004073.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0614D08
          Length = 147548

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 13    ctcgccccaaaccctagcgct 33
             |||||||||||||||||||||
Sbjct: 42665 ctcgccccaaaccctagcgct 42645

>dbj|AP003687.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0660F12
          Length = 147203

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 13    ctcgccccaaaccctagcgct 33
             |||||||||||||||||||||
Sbjct: 54571 ctcgccccaaaccctagcgct 54551

>dbj|AK120633.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153I18, full
           insert sequence
          Length = 5246

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 13  ctcgccccaaaccctagcgct 33
           |||||||||||||||||||||
Sbjct: 433 ctcgccccaaaccctagcgct 453

>dbj|AK105567.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-C09, full
           insert sequence
          Length = 2145

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 13  ctcgccccaaaccctagcgct 33
           |||||||||||||||||||||
Sbjct: 438 ctcgccccaaaccctagcgct 458

>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07,
             complete sequence
          Length = 151399

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    ctcgccccaaaccctagcgc 32
             ||||||||||||||||||||
Sbjct: 34784 ctcgccccaaaccctagcgc 34803

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 13      ctcgccccaaaccctagcgc 32
               ||||||||||||||||||||
Sbjct: 1941907 ctcgccccaaaccctagcgc 1941926

>gb|DQ356948.1| Crocodilepox virus, complete genome
          Length = 190054

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 78     cagctcgcggcccgcgagc 96
              |||||||||||||||||||
Sbjct: 160080 cagctcgcggcccgcgagc 160098

>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 92     cgagcttgcgcagcaactt 110
              |||||||||||||||||||
Sbjct: 951602 cgagcttgcgcagcaactt 951584

>gb|AF176640.1|AF176640 Pseudomonas stutzeri sigma54-dependent transcriptional regulator AdhR
            (adhR), alcohol dehydrogenase (adh), coenzyme PQQ
            synthesis protein A (pqqA), and coenzyme PQQ synthesis
            protein B (pqqB) genes, complete cds
          Length = 7097

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 71   cgctccacagctcgcggcc 89
            |||||||||||||||||||
Sbjct: 3737 cgctccacagctcgcggcc 3719

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 90     cgcgagcttgcgcagcaac 108
              |||||||||||||||||||
Sbjct: 836569 cgcgagcttgcgcagcaac 836551

>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 88    cccgcgagcttgcgcagca 106
             |||||||||||||||||||
Sbjct: 45428 cccgcgagcttgcgcagca 45410

>gb|U67426.1|VVU67426 Vitis vinifera malate dehydrogenase (VVME2) mRNA, complete cds
          Length = 2186

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 121 ttgaacatcgcgaaccccaccac 143
           ||||||||| |||||||||||||
Sbjct: 396 ttgaacatcccgaaccccaccac 374

>emb|AJ001813.1|SRRNARIP1 Strongyloides ratti mRNA for Sr-rip-1 protein
          Length = 481

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 109 ttcaccatgaagttgaacatcgc 131
           |||| ||||||||||||||||||
Sbjct: 6   ttcatcatgaagttgaacatcgc 28


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 574,302
Number of Sequences: 3902068
Number of extensions: 574302
Number of successful extensions: 40055
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39782
Number of HSP's gapped (non-prelim): 273
length of query: 151
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 130
effective length of database: 17,151,101,840
effective search space: 2229643239200
effective search space used: 2229643239200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)