ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart21d07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_193764.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 777 Score = 151 bits (76), Expect = 3e-33 Identities = 151/176 (85%) Strand = Plus / Plus Query: 387 aagaaggggggcgcgcctgccactgctgggagcggcggcgctggccgtggtcgtcgtgaa 446 |||||||| ||||||||| |||||| |||| | || |||| ||| |||||||||||||| Sbjct: 166 aagaagggcggcgcgccttccactggtgggggtggtggcggtgggcgtggtcgtcgtgag 225 Query: 447 gccatcgagcgtattactcagattgcagagtcttgtctcaagtcctctactcctctacgg 506 || || |||||||||||||||||||||||||||||||| || |||| |||||||| || Sbjct: 226 gctattgagcgtattactcagattgcagagtcttgtctgaatgcctcaactcctctgcgc 285 Query: 507 cacctgtcccccaaggagcgtctccgcgagacaaagcgtgaggagcttgggctcat 562 || || ||||||||||||||||| || ||| | || |||||||||||||| ||||| Sbjct: 286 catctatcccccaaggagcgtcttcgtgaggccaaacgtgaggagcttggactcat 341 Score = 65.9 bits (33), Expect = 1e-07 Identities = 72/85 (84%) Strand = Plus / Plus Query: 268 tggcatctggtatgaccagccagcatcaccagcttcagcagcgagcaccggtgagcggca 327 |||||||||| ||||| ||||||||||||||||||| |||| || || ||||| || | Sbjct: 44 tggcatctgggatgacgtgccagcatcaccagcttcaacagcatgcgccagtgagtggaa 103 Query: 328 catccaagggcaaggcgaagctcaa 352 || ||||||| ||||| |||||||| Sbjct: 104 cagccaagggtaaggctaagctcaa 128
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 151 bits (76), Expect = 3e-33 Identities = 151/176 (85%) Strand = Plus / Minus Query: 387 aagaaggggggcgcgcctgccactgctgggagcggcggcgctggccgtggtcgtcgtgaa 446 |||||||| ||||||||| |||||| |||| | || |||| ||| |||||||||||||| Sbjct: 17992394 aagaagggcggcgcgccttccactggtgggggtggtggcggtgggcgtggtcgtcgtgag 17992335 Query: 447 gccatcgagcgtattactcagattgcagagtcttgtctcaagtcctctactcctctacgg 506 || || |||||||||||||||||||||||||||||||| || |||| |||||||| || Sbjct: 17992334 gctattgagcgtattactcagattgcagagtcttgtctgaatgcctcaactcctctgcgc 17992275 Query: 507 cacctgtcccccaaggagcgtctccgcgagacaaagcgtgaggagcttgggctcat 562 || || ||||||||||||||||| || ||| | || |||||||||||||| ||||| Sbjct: 17992274 catctatcccccaaggagcgtcttcgtgaggccaaacgtgaggagcttggactcat 17992219 Score = 65.9 bits (33), Expect = 1e-07 Identities = 72/85 (84%) Strand = Plus / Minus Query: 268 tggcatctggtatgaccagccagcatcaccagcttcagcagcgagcaccggtgagcggca 327 |||||||||| ||||| ||||||||||||||||||| |||| || || ||||| || | Sbjct: 17992516 tggcatctgggatgacgtgccagcatcaccagcttcaacagcatgcgccagtgagtggaa 17992457 Query: 328 catccaagggcaaggcgaagctcaa 352 || ||||||| ||||| |||||||| Sbjct: 17992456 cagccaagggtaaggctaagctcaa 17992432
>dbj|AP003213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0054L14 Length = 150022 Score = 151 bits (76), Expect = 3e-33 Identities = 151/176 (85%) Strand = Plus / Minus Query: 387 aagaaggggggcgcgcctgccactgctgggagcggcggcgctggccgtggtcgtcgtgaa 446 |||||||| ||||||||| |||||| |||| | || |||| ||| |||||||||||||| Sbjct: 19635 aagaagggcggcgcgccttccactggtgggggtggtggcggtgggcgtggtcgtcgtgag 19576 Query: 447 gccatcgagcgtattactcagattgcagagtcttgtctcaagtcctctactcctctacgg 506 || || |||||||||||||||||||||||||||||||| || |||| |||||||| || Sbjct: 19575 gctattgagcgtattactcagattgcagagtcttgtctgaatgcctcaactcctctgcgc 19516 Query: 507 cacctgtcccccaaggagcgtctccgcgagacaaagcgtgaggagcttgggctcat 562 || || ||||||||||||||||| || ||| | || |||||||||||||| ||||| Sbjct: 19515 catctatcccccaaggagcgtcttcgtgaggccaaacgtgaggagcttggactcat 19460 Score = 65.9 bits (33), Expect = 1e-07 Identities = 72/85 (84%) Strand = Plus / Minus Query: 268 tggcatctggtatgaccagccagcatcaccagcttcagcagcgagcaccggtgagcggca 327 |||||||||| ||||| ||||||||||||||||||| |||| || || ||||| || | Sbjct: 19757 tggcatctgggatgacgtgccagcatcaccagcttcaacagcatgcgccagtgagtggaa 19698 Query: 328 catccaagggcaaggcgaagctcaa 352 || ||||||| ||||| |||||||| Sbjct: 19697 cagccaagggtaaggctaagctcaa 19673
>dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0520B06 Length = 142667 Score = 151 bits (76), Expect = 3e-33 Identities = 151/176 (85%) Strand = Plus / Minus Query: 387 aagaaggggggcgcgcctgccactgctgggagcggcggcgctggccgtggtcgtcgtgaa 446 |||||||| ||||||||| |||||| |||| | || |||| ||| |||||||||||||| Sbjct: 112229 aagaagggcggcgcgccttccactggtgggggtggtggcggtgggcgtggtcgtcgtgag 112170 Query: 447 gccatcgagcgtattactcagattgcagagtcttgtctcaagtcctctactcctctacgg 506 || || |||||||||||||||||||||||||||||||| || |||| |||||||| || Sbjct: 112169 gctattgagcgtattactcagattgcagagtcttgtctgaatgcctcaactcctctgcgc 112110 Query: 507 cacctgtcccccaaggagcgtctccgcgagacaaagcgtgaggagcttgggctcat 562 || || ||||||||||||||||| || ||| | || |||||||||||||| ||||| Sbjct: 112109 catctatcccccaaggagcgtcttcgtgaggccaaacgtgaggagcttggactcat 112054 Score = 65.9 bits (33), Expect = 1e-07 Identities = 72/85 (84%) Strand = Plus / Minus Query: 268 tggcatctggtatgaccagccagcatcaccagcttcagcagcgagcaccggtgagcggca 327 |||||||||| ||||| ||||||||||||||||||| |||| || || ||||| || | Sbjct: 112351 tggcatctgggatgacgtgccagcatcaccagcttcaacagcatgcgccagtgagtggaa 112292 Query: 328 catccaagggcaaggcgaagctcaa 352 || ||||||| ||||| |||||||| Sbjct: 112291 cagccaagggtaaggctaagctcaa 112267
>dbj|AK058499.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-F02, full insert sequence Length = 1470 Score = 151 bits (76), Expect = 3e-33 Identities = 151/176 (85%) Strand = Plus / Plus Query: 387 aagaaggggggcgcgcctgccactgctgggagcggcggcgctggccgtggtcgtcgtgaa 446 |||||||| ||||||||| |||||| |||| | || |||| ||| |||||||||||||| Sbjct: 545 aagaagggcggcgcgccttccactggtgggggtggtggcggtgggcgtggtcgtcgtgag 604 Query: 447 gccatcgagcgtattactcagattgcagagtcttgtctcaagtcctctactcctctacgg 506 || || |||||||||||||||||||||||||||||||| || |||| |||||||| || Sbjct: 605 gctattgagcgtattactcagattgcagagtcttgtctgaatgcctcaactcctctgcgc 664 Query: 507 cacctgtcccccaaggagcgtctccgcgagacaaagcgtgaggagcttgggctcat 562 || || ||||||||||||||||| || ||| | || |||||||||||||| ||||| Sbjct: 665 catctatcccccaaggagcgtcttcgtgaggccaaacgtgaggagcttggactcat 720 Score = 65.9 bits (33), Expect = 1e-07 Identities = 72/85 (84%) Strand = Plus / Plus Query: 268 tggcatctggtatgaccagccagcatcaccagcttcagcagcgagcaccggtgagcggca 327 |||||||||| ||||| ||||||||||||||||||| |||| || || ||||| || | Sbjct: 423 tggcatctgggatgacgtgccagcatcaccagcttcaacagcatgcgccagtgagtggaa 482 Query: 328 catccaagggcaaggcgaagctcaa 352 || ||||||| ||||| |||||||| Sbjct: 483 cagccaagggtaaggctaagctcaa 507
>gb|AY104891.1| Zea mays PCO129002 mRNA sequence Length = 952 Score = 77.8 bits (39), Expect = 4e-11 Identities = 108/131 (82%) Strand = Plus / Plus Query: 420 ggcggcgctggccgtggtcgtcgtgaagccatcgagcgtattactcagattgcagagtct 479 ||||||| ||| |||||||||||||| ||||| ||||| |||| ||||||| | ||||| Sbjct: 388 ggcggcggtggtcgtggtcgtcgtgaggccattgagcgcattattcagatttccgagtca 447 Query: 480 tgtctcaagtcctctactcctctacggcacctgtcccccaaggagcgtctccgcgagaca 539 |||||||| | |||||||| | |||||| || ||| |||||||||||| || ||| | Sbjct: 448 tgtctcaatgcatctactccgttgcggcacttgcccctcaaggagcgtcttcgtgaggcc 507 Query: 540 aagcgtgagga 550 || |||||||| Sbjct: 508 aaacgtgagga 518 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 268 tggcatctggtatgaccagccagcatcaccagcttcagcagcgagcaccggtgagcggca 327 ||||||||||| ||| ||| |||| | |||||||||| |||| ||||| ||||| |||| Sbjct: 239 tggcatctggtgtgatcagacagcgttaccagcttcaacagcatgcaccagtgagtggca 298 Query: 328 catccaagggcaaggcgaagctcaaagc 355 ||||||| || ||||| ||||||||||| Sbjct: 299 catccaaaggaaaggctaagctcaaagc 326
>ref|XM_846307.1| PREDICTED: Canis familiaris similar to prostaglandin E synthase 2 isoform 1 (LOC609101), mRNA Length = 1133 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 |||||||||||||||||||||||| Sbjct: 177 ctgctgggagcggcggcgctggcc 200
>gb|AF497482.1| Micromonospora echinospora calicheamicin biosynthetic locus, complete sequence Length = 90348 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 414 gggagcggcggcgctggccgtggtcgtcgtg 444 |||||||||||||| ||||||||||| |||| Sbjct: 38804 gggagcggcggcgccggccgtggtcgccgtg 38774
>gb|BC096811.1| Danio rerio zgc:110422, mRNA (cDNA clone MGC:110422 IMAGE:7223184), complete cds Length = 1346 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 412 ctgggagcggcggcgctggccgtggt 437 |||||||| ||||||||||||||||| Sbjct: 1125 ctgggagccgcggcgctggccgtggt 1150
>ref|NM_001025172.1| Danio rerio zgc:110422 (zgc:110422), mRNA Length = 1346 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 412 ctgggagcggcggcgctggccgtggt 437 |||||||| ||||||||||||||||| Sbjct: 1125 ctgggagccgcggcgctggccgtggt 1150
>ref|XM_680650.1| PREDICTED: Danio rerio similar to TBC1 domain family, member 20 (LOC557564), mRNA Length = 687 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 412 ctgggagcggcggcgctggccgtggt 437 |||||||| ||||||||||||||||| Sbjct: 613 ctgggagccgcggcgctggccgtggt 638
>ref|XM_679513.1| PREDICTED: Danio rerio similar to TBC1 domain family, member 20 (LOC556664), mRNA Length = 1200 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 412 ctgggagcggcggcgctggccgtggt 437 |||||||| ||||||||||||||||| Sbjct: 1126 ctgggagccgcggcgctggccgtggt 1151
>emb|BX932745.1| Gallus gallus finished cDNA, clone ChEST479a8 Length = 419 Score = 44.1 bits (22), Expect = 0.50 Identities = 32/34 (94%), Gaps = 1/34 (2%) Strand = Plus / Minus Query: 119 cctcgtcgtcctccgcctccagc-gcgccccgcc 151 ||||||| ||||||||||||||| |||||||||| Sbjct: 73 cctcgtcctcctccgcctccagcggcgccccgcc 40
>emb|BX324213.8| Zebrafish DNA sequence from clone DKEY-102C8 in linkage group 22, complete sequence Length = 94824 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 412 ctgggagcggcggcgctggccgtggt 437 |||||||| ||||||||||||||||| Sbjct: 24160 ctgggagccgcggcgctggccgtggt 24135
>ref|XM_365824.1| Magnaporthe grisea 70-15 hypothetical protein (MG02526.4) partial mRNA Length = 3216 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 ctcgtcgtcctccgcctccag 140 ||||||||||||||||||||| Sbjct: 3210 ctcgtcgtcctccgcctccag 3190
>emb|AL929520.17| Zebrafish DNA sequence from clone CH211-134D13 in linkage group 3, complete sequence Length = 160253 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 462 actcagattgcagagtcttgt 482 ||||||||||||||||||||| Sbjct: 29696 actcagattgcagagtcttgt 29716
>ref|XM_550348.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2826 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctcgtcgtcctccgcctcca 139 |||||||||||||||||||| Sbjct: 143 ctcgtcgtcctccgcctcca 124
>gb|AC161505.4| Mus musculus chromosome 8, clone RP24-307K17, complete sequence Length = 215514 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 507 cacctgtcccccaaggagcgtctc 530 ||||||||||||||||||| |||| Sbjct: 46837 cacctgtcccccaaggagcttctc 46814
>gb|AC145323.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0018N12, complete sequence Length = 137127 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 cggcctcgtcgtcctccgcc 135 |||||||||||||||||||| Sbjct: 112473 cggcctcgtcgtcctccgcc 112492
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 ctccgacggcctcgtcgtcc 129 |||||||||||||||||||| Sbjct: 2168893 ctccgacggcctcgtcgtcc 2168874
>gb|AC102232.12| Mus musculus chromosome 18, clone RP24-76F12, complete sequence Length = 232199 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gcagcagcagtggcatctgg 277 |||||||||||||||||||| Sbjct: 167003 gcagcagcagtggcatctgg 167022
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 ctccgacggcctcgtcgtcc 129 |||||||||||||||||||| Sbjct: 3553564 ctccgacggcctcgtcgtcc 3553545
>ref|XM_846423.1| PREDICTED: Canis familiaris similar to Dre1 protein (LOC609209), mRNA Length = 1929 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 gcggcggcgctggccgtggt 437 |||||||||||||||||||| Sbjct: 475 gcggcggcgctggccgtggt 494
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 331 ccaagggcaaggcgaagctcaaag 354 ||||| |||||||||||||||||| Sbjct: 267195 ccaagcgcaaggcgaagctcaaag 267218
>emb|CR339054.14| Zebrafish DNA sequence from clone DKEY-151M22 in linkage group 23, complete sequence Length = 184755 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 atcaccagcttcagcagcga 311 |||||||||||||||||||| Sbjct: 182901 atcaccagcttcagcagcga 182882
>gb|AC127677.4| Mus musculus BAC clone RP24-226C2 from chromosome 8, complete sequence Length = 167913 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 507 cacctgtcccccaaggagcgtctc 530 ||||||||||||||||||| |||| Sbjct: 110712 cacctgtcccccaaggagcttctc 110689
>ref|XM_803238.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053503829.30) partial mRNA Length = 1461 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ggcacatccaagggcaaggc 343 |||||||||||||||||||| Sbjct: 960 ggcacatccaagggcaaggc 941
>ref|XM_809146.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508045.20) partial mRNA Length = 1479 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ggcacatccaagggcaaggc 343 |||||||||||||||||||| Sbjct: 960 ggcacatccaagggcaaggc 941
>gb|BC009397.2| Homo sapiens prostaglandin E synthase 2, mRNA (cDNA clone IMAGE:4134979), partial cds Length = 1607 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 152 ctgctgggagctgcggcgctggcc 175
>ref|NM_198939.1| Homo sapiens prostaglandin E synthase 2 (PTGES2), transcript variant 3, mRNA Length = 2213 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 650 ctgctgggagctgcggcgctggcc 673
>ref|NM_025072.4| Homo sapiens prostaglandin E synthase 2 (PTGES2), transcript variant 1, mRNA Length = 2120 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 650 ctgctgggagctgcggcgctggcc 673
>emb|AL590708.18| Human DNA sequence from clone RP11-395P17 on chromosome 9 Contains the PCSCL gene for likely ortholog of rat peroxisomal Ca-dependent solute carrier-like protein (KIAA1896), the PTGES2 gene for prostaglandin E synthase 2 (GBF1, GBF-1, C9orf15, FLJ14038), the LCN2 gene for lipocalin 2 (oncogene 24p3) (NGAL), the C9orf16 gene for chromosome 9 open reading frame 16 (MGC4639, EST00098, FLJ12823), the CIZ1 gene for Cip1-interacting zinc finger protein (LSFR1), the DNM1 gene for dynamin 1 (DNM), the GOLGA2 gene for golgi autoantigen, golgin subfamily a, 2 (GM130, MGC20672), the gene for a novel protein and seven CpG islands, complete sequence Length = 194056 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 28851 ctgctgggagctgcggcgctggcc 28828
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 ccgacggcctcgtcgtcctc 131 |||||||||||||||||||| Sbjct: 523860 ccgacggcctcgtcgtcctc 523879
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||| |||||||||||||||| Sbjct: 90340 ctgctggaagcggcggcgctggcc 90363
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||| |||||||||||||||| Sbjct: 9601 ctgctggaagcggcggcgctggcc 9624
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||| |||||||||||||||| Sbjct: 257445 ctgctggaagcggcggcgctggcc 257468
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 ctccgacggcctcgtcgtcc 129 |||||||||||||||||||| Sbjct: 3294956 ctccgacggcctcgtcgtcc 3294937
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 tccgtgccaccggagtcgcc 183 |||||||||||||||||||| Sbjct: 124301 tccgtgccaccggagtcgcc 124282
>emb|AJ237815.1|PAD237815 Porcine adenovirus serotype 3 complete genome, strain IAF Length = 34094 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 119 cctcgtcgtcctccgcctccagcg 142 |||| ||||||||||||||||||| Sbjct: 24218 cctcctcgtcctccgcctccagcg 24241
>emb|AJ223360.1|GGAJ3360 Drosophila melanogaster mRNA for puckered protein Length = 2318 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 agcagcagcagtggcatctg 276 |||||||||||||||||||| Sbjct: 1558 agcagcagcagtggcatctg 1577
>emb|CR620072.1| full-length cDNA clone CS0DF033YM20 of Fetal brain of Homo sapiens (human) Length = 1554 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 169 ctgctgggagctgcggcgctggcc 192
>emb|CR618698.1| full-length cDNA clone CS0DN001YO17 of Adult brain of Homo sapiens (human) Length = 2103 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 172 ctgctgggagctgcggcgctggcc 195
>emb|CR616835.1| full-length cDNA clone CS0DC025YM09 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1555 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 157 ctgctgggagctgcggcgctggcc 180
>emb|CR616554.1| full-length cDNA clone CS0DC013YB24 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1573 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 186 ctgctgggagctgcggcgctggcc 209
>emb|CR607888.1| full-length cDNA clone CS0DI054YA17 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1546 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 156 ctgctgggagctgcggcgctggcc 179
>emb|CR606648.1| full-length cDNA clone CS0DC003YK19 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1533 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 148 ctgctgggagctgcggcgctggcc 171
>emb|CR603861.1| full-length cDNA clone CS0DK008YN14 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1537 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 150 ctgctgggagctgcggcgctggcc 173
>emb|CR603098.1| full-length cDNA clone CS0DI039YJ19 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1584 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 170 ctgctgggagctgcggcgctggcc 193
>dbj|AK057049.1| Homo sapiens cDNA FLJ32487 fis, clone SKNSH1000002, weakly similar to Drosophila melanogaster Su(P) Length = 2340 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 927 ctgctgggagctgcggcgctggcc 950
>emb|CR597019.1| full-length cDNA clone CS0DA008YK13 of Neuroblastoma of Homo sapiens (human) Length = 1553 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 171 ctgctgggagctgcggcgctggcc 194
>emb|CR596747.1| full-length cDNA clone CS0DC020YE14 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1557 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 170 ctgctgggagctgcggcgctggcc 193
>emb|CR595131.1| full-length cDNA clone CL0BB017ZF10 of Neuroblastoma of Homo sapiens (human) Length = 1584 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 170 ctgctgggagctgcggcgctggcc 193
>emb|CR594346.1| full-length cDNA clone CS0DK005YJ02 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1541 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 165 ctgctgggagctgcggcgctggcc 188
>dbj|AK024100.1| Homo sapiens cDNA FLJ14038 fis, clone HEMBA1005206 Length = 1597 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 184 ctgctgggagctgcggcgctggcc 207
>emb|CR592294.1| full-length cDNA clone CS0DI020YG02 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1571 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 157 ctgctgggagctgcggcgctggcc 180
>emb|CR591721.1| full-length cDNA clone CS0DD008YE15 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 1519 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 121 ctgctgggagctgcggcgctggcc 144
>dbj|AB194715.1| Sesamum radiatum CYP81Q2 mRNA for cytochrome P450, complete cds Length = 1521 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 cctcgtcgtcctccgcctcc 138 |||||||||||||||||||| Sbjct: 622 cctcgtcgtcctccgcctcc 603
>dbj|AB194714.1| Sesamum indicum CYP81Q1 mRNA for cytochrome P450, complete cds Length = 1521 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 cctcgtcgtcctccgcctcc 138 |||||||||||||||||||| Sbjct: 622 cctcgtcgtcctccgcctcc 603
>ref|NM_079549.2| Drosophila melanogaster puckered CG7850-RA (puc), mRNA Length = 2923 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 agcagcagcagtggcatctg 276 |||||||||||||||||||| Sbjct: 1679 agcagcagcagtggcatctg 1698
>gb|AC093791.3| Homo sapiens BAC clone RP11-261K4 from 4, complete sequence Length = 166189 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 gcctttccaagacactcacc 248 |||||||||||||||||||| Sbjct: 164481 gcctttccaagacactcacc 164462
>gb|AY061616.1| Drosophila melanogaster SD08157 full length cDNA Length = 2903 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 agcagcagcagtggcatctg 276 |||||||||||||||||||| Sbjct: 1626 agcagcagcagtggcatctg 1645
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 67 cgccgtccccgtccgcgccgtcttcgcgcagc 98 ||||||||||| |||||||| |||||||||| Sbjct: 382940 cgccgtccccgaccgcgccgctttcgcgcagc 382909
>gb|BC009456.1|BC009456 Homo sapiens, clone IMAGE:3536456, mRNA, partial cds Length = 1607 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 170 ctgctgggagctgcggcgctggcc 193
>gb|AC008093.4|AC008093 Drosophila melanogaster, chromosome 3R, region 84F-84F, BAC clone BACR07M14, complete sequence Length = 181950 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 agcagcagcagtggcatctg 276 |||||||||||||||||||| Sbjct: 171748 agcagcagcagtggcatctg 171767
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 cggcctcgtcgtcctccgcc 135 |||||||||||||||||||| Sbjct: 5045240 cggcctcgtcgtcctccgcc 5045221
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 ctcgtcgtcctccgcctcca 139 |||||||||||||||||||| Sbjct: 3180489 ctcgtcgtcctccgcctcca 3180508
>gb|AC108012.4| Homo sapiens BAC clone RP13-513D3 from 4, complete sequence Length = 48578 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 gcctttccaagacactcacc 248 |||||||||||||||||||| Sbjct: 48287 gcctttccaagacactcacc 48306
>dbj|AK223520.1| Homo sapiens mRNA for prostaglandin E synthase 2 isoform 1 variant, clone: FCC123C01 Length = 1256 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 179 ctgctgggagctgcggcgctggcc 202
>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0681F10 Length = 170371 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 ctcgtcgtcctccgcctcca 139 |||||||||||||||||||| Sbjct: 134674 ctcgtcgtcctccgcctcca 134693
>emb|AJ323951.1|HSA323951 Homo sapiens genomic sequence surrounding NotI site, clone NR1-SF14R Length = 662 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 gcggcggcgctggccgtggt 437 |||||||||||||||||||| Sbjct: 231 gcggcggcgctggccgtggt 212
>ref|NM_211562.1| Eremothecium gossypii AGL167Cp (AGL167C), mRNA Length = 2184 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 67 cgccgtccccgtccgcgccgtcttcgcgcagc 98 ||||||||||| |||||||| |||||||||| Sbjct: 2124 cgccgtccccgaccgcgccgctttcgcgcagc 2155
>dbj|AK072504.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125E09, full insert sequence Length = 1736 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctcgtcgtcctccgcctcca 139 |||||||||||||||||||| Sbjct: 118 ctcgtcgtcctccgcctcca 99
>dbj|AK069675.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027M09, full insert sequence Length = 3209 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctcgtcgtcctccgcctcca 139 |||||||||||||||||||| Sbjct: 118 ctcgtcgtcctccgcctcca 99
>dbj|AK069245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014O10, full insert sequence Length = 2826 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctcgtcgtcctccgcctcca 139 |||||||||||||||||||| Sbjct: 143 ctcgtcgtcctccgcctcca 124
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 cccgtccgcgccgtcttcgc 93 |||||||||||||||||||| Sbjct: 1964848 cccgtccgcgccgtcttcgc 1964829
>gb|BC011613.2| Homo sapiens prostaglandin E synthase 2, transcript variant 1, mRNA (cDNA clone MGC:11289 IMAGE:3946495), complete cds Length = 1822 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgggagcggcggcgctggcc 432 ||||||||||| |||||||||||| Sbjct: 352 ctgctgggagctgcggcgctggcc 375
>gb|U82628.1|PAU82628 Porcine adenovirus 3 100K protein gene, complete cds Length = 2517 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 119 cctcgtcgtcctccgcctccagcg 142 |||| ||||||||||||||||||| Sbjct: 167 cctcctcgtcctccgcctccagcg 190
>gb|AE003677.3| Drosophila melanogaster chromosome 3R, section 15 of 118 of the complete sequence Length = 228314 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 agcagcagcagtggcatctg 276 |||||||||||||||||||| Sbjct: 150143 agcagcagcagtggcatctg 150162
>gb|DQ229206.1| Phytophthora ramorum elicitin-like protein RAL2C gene, complete cds Length = 1032 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 116 cggcctcgtcgtcctccgcctccagcgc 143 |||||||||||||||| | ||||||||| Sbjct: 929 cggcctcgtcgtcctcgggctccagcgc 956
>gb|AF083132.1|AF083132 Porcine adenovirus 3 strain 6618, complete genome Length = 34094 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 119 cctcgtcgtcctccgcctccagcg 142 |||| ||||||||||||||||||| Sbjct: 24222 cctcctcgtcctccgcctccagcg 24245
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 118 gcctcgtcgtcctccgcctccagcgcgccccg 149 |||||||||||||| |||| ||||||||||| Sbjct: 4563253 gcctcgtcgtcctctgccttaagcgcgccccg 4563284
>dbj|AP000744.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-691P24, complete sequence Length = 126000 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 gcggcggcgctggccgtggt 437 |||||||||||||||||||| Sbjct: 120942 gcggcggcgctggccgtggt 120923
>dbj|AK116515.1| Ciona intestinalis cDNA, clone:cieg008f06, full insert sequence Length = 1679 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 cagcagcagtggcatctggt 278 |||||||||||||||||||| Sbjct: 714 cagcagcagtggcatctggt 695
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 410 tgctgggagcggcggcgctggccg 433 |||||||| ||||||||||||||| Sbjct: 738704 tgctgggatcggcggcgctggccg 738727
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 cggcctcgtcgtcctccgcc 135 |||||||||||||||||||| Sbjct: 5111717 cggcctcgtcgtcctccgcc 5111698
>emb|AL354819.15| Human DNA sequence from clone RP11-7B3 on chromosome 13 Contains the 3' end of the gene for a novel calx-beta domain containing protein similar to sea urchin ECM3, a novel gene, a phospholipase A2 group XII (PLA2G12) pseudogene and a novel KIAA0565 KIAA1074 and breast cancer antigen NY-BR-1 containing pseudogene, complete sequence Length = 153149 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gcccagcagcagcagtggca 272 |||||||||||||||||||| Sbjct: 10316 gcccagcagcagcagtggca 10335
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 tgggatgcctctgaggcgta 375 |||||||||||||||||||| Sbjct: 1196608 tgggatgcctctgaggcgta 1196589
>dbj|AB026117.1| Porcine adenovirus 3 DNA, complete genome Length = 34094 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 119 cctcgtcgtcctccgcctccagcg 142 |||| ||||||||||||||||||| Sbjct: 24218 cctcctcgtcctccgcctccagcg 24241 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,249,080 Number of Sequences: 3902068 Number of extensions: 4249080 Number of successful extensions: 101649 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100574 Number of HSP's gapped (non-prelim): 1075 length of query: 570 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 547 effective length of database: 17,143,297,704 effective search space: 9377383844088 effective search space used: 9377383844088 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
