ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart21d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 264 3e-67
2dbj|AP003522.3| Oryza sativa (japonica cultivar-group) genomic D... 264 3e-67
3dbj|AK059089.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 3e-67
4dbj|AK058424.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 3e-67
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 72 2e-09
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
7gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome... 72 2e-09
8gb|AF416331.1| Ruegeria sp. PR1b plasmid pSD25, complete sequence 46 0.12
9dbj|AK070050.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
10gb|AC118672.3| Genomic sequence for Oryza sativa, Nipponbare str... 46 0.12
11emb|CR733495.2|CNS0GSQU Tetraodon nigroviridis full-length cDNA 44 0.48
12emb|CR731215.2|CNS0GR5G Tetraodon nigroviridis full-length cDNA 44 0.48
13emb|CR730446.2|CNS0GQK3 Tetraodon nigroviridis full-length cDNA 44 0.48
14emb|CR728515.2|CNS0GP2H Tetraodon nigroviridis full-length cDNA 44 0.48
15emb|CR724128.1|CNS0GLOM Tetraodon nigroviridis full-length cDNA 44 0.48
16emb|CR724687.2|CNS0GM45 Tetraodon nigroviridis full-length cDNA 44 0.48
17emb|CR700659.1|CNS0G3KV Tetraodon nigroviridis full-length cDNA 44 0.48
18gb|AY260902.1| Rhodospirillum centenum che2 gene cluster, comple... 42 1.9
19gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 42 1.9
20gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 42 1.9
21gb|AE004627.1| Pseudomonas aeruginosa PAO1, section 188 of 529 o... 42 1.9
22gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 42 1.9
23gb|AE015451.1| Pseudomonas putida KT2440 complete genome 42 1.9
24emb|AM156932.1| Streptomyces steffisburgensis cluster for steffi... 42 1.9
25gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 7.5
26ref|NM_195945.1| Oryza sativa (japonica cultivar-group) putative... 40 7.5
27ref|XM_588354.2| PREDICTED: Bos taurus similar to obscurin, cyto... 40 7.5
28gb|AE009206.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 7.5
29gb|AC135923.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
30gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosyntheti... 40 7.5
31gb|AF142435.1| Frankia sp. ACN14a/ts-r 20S proteasome beta-subun... 40 7.5
32emb|AL136991.26| Human DNA sequence from clone RP11-189J1 on chr... 40 7.5
33emb|AL121891.22|HS1187M17 Human DNA sequence from clone RP5-1187... 40 7.5
34emb|X89726.1|RLCYCHJKL R.leguminosarum DNA for cycH, cycJ, cycK ... 40 7.5
35emb|CR933498.1|OSJN00303 Oryza sativa genomic DNA, chromosome 4,... 40 7.5
36emb|AL662990.3|OSJN00194 Oryza sativa genomic DNA, chromosome 4,... 40 7.5
37gb|DQ088847.1| Uncultured bacterium MedeBAC46A06 clone MedeBAC46... 40 7.5
38dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 7.5
39gb|AC092749.1| Genomic sequence for Oryza sativa (japonica culti... 40 7.5
40gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 7.5
41gb|CP000249.1| Frankia sp. CcI3, complete genome 40 7.5
42dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
43dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
44dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
45gb|AY179507.1| Streptomyces hygroscopicus strain NRRL 3602 gelda... 40 7.5
46gb|AE005015.1| Halobacterium sp. NRC-1 section 46 of 170 of the ... 40 7.5
47emb|Y13146.1|STVTAXREX Simian T-cell lymphotropic virus type I D... 40 7.5
48emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 7.5
49gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, ... 40 7.5
50gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 7.5
51emb|AJ628018.2| Streptomyces sp. SCC 2136 deoxysugar biosyntheti... 40 7.5
52emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 7.5
53gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  264 bits (133), Expect = 3e-67
 Identities = 238/273 (87%)
 Strand = Plus / Minus

                                                                            
Query: 81       cctccttccttgttgaatgcctaggatggctgatcgtcgtcctcttttctttgtacgtct 140
                |||||||||| ||||| |||||   ||||||  ||||||||||||| ||  ||||| |||
Sbjct: 10688670 cctccttcctcgttgagtgcctgtcatggcttgtcgtcgtcctcttctccctgtacatct 10688611

                                                                            
Query: 141      tccagttgctccgtgacgctcgcccgcgtcttccccctggcccctggccgccgaagccgc 200
                ||||| | ||||| ||||| ||||  || || ||||| || |||||||||||||||||||
Sbjct: 10688610 tccagcttctccgcgacgcccgccgccgcctccccccgggtccctggccgccgaagccgc 10688551

                                                                            
Query: 201      tcatcggcgacctcctcgacctcggggaggatggccagcagcaccgcgcgttccagcgcc 260
                || |||||||||||||||||||||| ||||| ||| ||||||||||| ||||||  ||||
Sbjct: 10688550 tcgtcggcgacctcctcgacctcggcgaggacggcaagcagcaccgcacgttcctccgcc 10688491

                                                                            
Query: 261      tggccgaccgctatggtggcctcatgtgcctccgcttcggcatggtgccccacgtgatca 320
                | |||| |||||| || |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 10688490 tcgccggccgctacggcggcctcatgtgcctccgcttcggcatggtgccccacgtgatcg 10688431

                                                 
Query: 321      tctccacgccggacgccctgcgcgcggtcttcg 353
                ||||||| |||||||||||||||||||| ||||
Sbjct: 10688430 tctccaccccggacgccctgcgcgcggtgttcg 10688398



 Score =  262 bits (132), Expect = 1e-66
 Identities = 188/206 (91%), Gaps = 3/206 (1%)
 Strand = Plus / Minus

                                                                            
Query: 352      cggcggcggggaaggcaagaaggtggacaacatcgggggcctcccgagcctggacgtcct 411
                |||||||||||||||||||||||||||   ||||| ||||||||||||||| ||||| ||
Sbjct: 10688375 cggcggcggggaaggcaagaaggtggatggcatcgcgggcctcccgagcctcgacgtgct 10688316

                                                                            
Query: 412      cagcgccatgggccacagcgcccacaccatcttcgcgctcccgagccaggacggcaagtg 471
                |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 10688315 cagcgccatgggccaccgcgcgcacaccatcttcgcgctcccgagccaggacggcaagtg 10688256

                                                                            
Query: 472      gcgcgcgctccgcaagttcgccgccgcagagatgctcgcgcccaggcggatc---tccgc 528
                ||||||||||||||||||||||||||| ||||||||||||||  ||||||||   |||||
Sbjct: 10688255 gcgcgcgctccgcaagttcgccgccgccgagatgctcgcgccgcggcggatctcgtccgc 10688196

                                          
Query: 529      cggggccggggcgctgctgcagacca 554
                 | |||||| |||| |||||||||||
Sbjct: 10688195 ggcggccggcgcgcagctgcagacca 10688170
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>dbj|AP003522.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0036B02
          Length = 168253

 Score =  264 bits (133), Expect = 3e-67
 Identities = 238/273 (87%)
 Strand = Plus / Minus

                                                                         
Query: 81    cctccttccttgttgaatgcctaggatggctgatcgtcgtcctcttttctttgtacgtct 140
             |||||||||| ||||| |||||   ||||||  ||||||||||||| ||  ||||| |||
Sbjct: 41733 cctccttcctcgttgagtgcctgtcatggcttgtcgtcgtcctcttctccctgtacatct 41674

                                                                         
Query: 141   tccagttgctccgtgacgctcgcccgcgtcttccccctggcccctggccgccgaagccgc 200
             ||||| | ||||| ||||| ||||  || || ||||| || |||||||||||||||||||
Sbjct: 41673 tccagcttctccgcgacgcccgccgccgcctccccccgggtccctggccgccgaagccgc 41614

                                                                         
Query: 201   tcatcggcgacctcctcgacctcggggaggatggccagcagcaccgcgcgttccagcgcc 260
             || |||||||||||||||||||||| ||||| ||| ||||||||||| ||||||  ||||
Sbjct: 41613 tcgtcggcgacctcctcgacctcggcgaggacggcaagcagcaccgcacgttcctccgcc 41554

                                                                         
Query: 261   tggccgaccgctatggtggcctcatgtgcctccgcttcggcatggtgccccacgtgatca 320
             | |||| |||||| || |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 41553 tcgccggccgctacggcggcctcatgtgcctccgcttcggcatggtgccccacgtgatcg 41494

                                              
Query: 321   tctccacgccggacgccctgcgcgcggtcttcg 353
             ||||||| |||||||||||||||||||| ||||
Sbjct: 41493 tctccaccccggacgccctgcgcgcggtgttcg 41461



 Score =  262 bits (132), Expect = 1e-66
 Identities = 188/206 (91%), Gaps = 3/206 (1%)
 Strand = Plus / Minus

                                                                         
Query: 352   cggcggcggggaaggcaagaaggtggacaacatcgggggcctcccgagcctggacgtcct 411
             |||||||||||||||||||||||||||   ||||| ||||||||||||||| ||||| ||
Sbjct: 41438 cggcggcggggaaggcaagaaggtggatggcatcgcgggcctcccgagcctcgacgtgct 41379

                                                                         
Query: 412   cagcgccatgggccacagcgcccacaccatcttcgcgctcccgagccaggacggcaagtg 471
             |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 41378 cagcgccatgggccaccgcgcgcacaccatcttcgcgctcccgagccaggacggcaagtg 41319

                                                                         
Query: 472   gcgcgcgctccgcaagttcgccgccgcagagatgctcgcgcccaggcggatc---tccgc 528
             ||||||||||||||||||||||||||| ||||||||||||||  ||||||||   |||||
Sbjct: 41318 gcgcgcgctccgcaagttcgccgccgccgagatgctcgcgccgcggcggatctcgtccgc 41259

                                       
Query: 529   cggggccggggcgctgctgcagacca 554
              | |||||| |||| |||||||||||
Sbjct: 41258 ggcggccggcgcgcagctgcagacca 41233
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>dbj|AK059089.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-B08, full
           insert sequence
          Length = 1743

 Score =  264 bits (133), Expect = 3e-67
 Identities = 238/273 (87%)
 Strand = Plus / Plus

                                                                       
Query: 81  cctccttccttgttgaatgcctaggatggctgatcgtcgtcctcttttctttgtacgtct 140
           |||||||||| ||||| |||||   ||||||  ||||||||||||| ||  ||||| |||
Sbjct: 69  cctccttcctcgttgagtgcctgtcatggcttgtcgtcgtcctcttctccctgtacatct 128

                                                                       
Query: 141 tccagttgctccgtgacgctcgcccgcgtcttccccctggcccctggccgccgaagccgc 200
           ||||| | ||||| ||||| ||||  || || ||||| || |||||||||||||||||||
Sbjct: 129 tccagcttctccgcgacgcccgccgccgcctccccccgggtccctggccgccgaagccgc 188

                                                                       
Query: 201 tcatcggcgacctcctcgacctcggggaggatggccagcagcaccgcgcgttccagcgcc 260
           || |||||||||||||||||||||| ||||| ||| ||||||||||| ||||||  ||||
Sbjct: 189 tcgtcggcgacctcctcgacctcggcgaggacggcaagcagcaccgcacgttcctccgcc 248

                                                                       
Query: 261 tggccgaccgctatggtggcctcatgtgcctccgcttcggcatggtgccccacgtgatca 320
           | |||| |||||| || |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 249 tcgccggccgctacggcggcctcatgtgcctccgcttcggcatggtgccccacgtgatcg 308

                                            
Query: 321 tctccacgccggacgccctgcgcgcggtcttcg 353
           ||||||| |||||||||||||||||||| ||||
Sbjct: 309 tctccaccccggacgccctgcgcgcggtgttcg 341



 Score =  254 bits (128), Expect = 3e-64
 Identities = 187/206 (90%), Gaps = 3/206 (1%)
 Strand = Plus / Plus

                                                                       
Query: 352 cggcggcggggaaggcaagaaggtggacaacatcgggggcctcccgagcctggacgtcct 411
           |||||||||||||||||||||||||||   ||||| ||||||||||||||| ||||| ||
Sbjct: 364 cggcggcggggaaggcaagaaggtggatggcatcgcgggcctcccgagcctcgacgtgct 423

                                                                       
Query: 412 cagcgccatgggccacagcgcccacaccatcttcgcgctcccgagccaggacggcaagtg 471
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cagcgccatgggccaccgcgcgcacaccatcttcgcgctcccgagccaggacggcaagtg 483

                                                                       
Query: 472 gcgcgcgctccgcaagttcgccgccgcagagatgctcgcgcccaggcggatc---tccgc 528
           ||||||||||||||||| ||||||||| ||||||||||||||  ||||||||   |||||
Sbjct: 484 gcgcgcgctccgcaagtccgccgccgccgagatgctcgcgccgcggcggatctcgtccgc 543

                                     
Query: 529 cggggccggggcgctgctgcagacca 554
            | |||||| |||| |||||||||||
Sbjct: 544 ggcggccggcgcgcagctgcagacca 569
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>dbj|AK058424.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-D12, full
           insert sequence
          Length = 1411

 Score =  264 bits (133), Expect = 3e-67
 Identities = 238/273 (87%)
 Strand = Plus / Plus

                                                                       
Query: 81  cctccttccttgttgaatgcctaggatggctgatcgtcgtcctcttttctttgtacgtct 140
           |||||||||| ||||| |||||   ||||||  ||||||||||||| ||  ||||| |||
Sbjct: 69  cctccttcctcgttgagtgcctgtcatggcttgtcgtcgtcctcttctccctgtacatct 128

                                                                       
Query: 141 tccagttgctccgtgacgctcgcccgcgtcttccccctggcccctggccgccgaagccgc 200
           ||||| | ||||| ||||| ||||  || || ||||| || |||||||||||||||||||
Sbjct: 129 tccagcttctccgcgacgcccgccgccgcctccccccgggtccctggccgccgaagccgc 188

                                                                       
Query: 201 tcatcggcgacctcctcgacctcggggaggatggccagcagcaccgcgcgttccagcgcc 260
           || |||||||||||||||||||||| ||||| ||| ||||||||||| ||||||  ||||
Sbjct: 189 tcgtcggcgacctcctcgacctcggcgaggacggcaagcagcaccgcacgttcctccgcc 248

                                                                       
Query: 261 tggccgaccgctatggtggcctcatgtgcctccgcttcggcatggtgccccacgtgatca 320
           | |||| |||||| || |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 249 tcgccggccgctacggcggcctcatgtgcctccgcttcggcatggtgccccacgtgatcg 308

                                            
Query: 321 tctccacgccggacgccctgcgcgcggtcttcg 353
           ||||||| |||||||||||||||||||| ||||
Sbjct: 309 tctccaccccggacgccctgcgcgcggtgttcg 341



 Score =  262 bits (132), Expect = 1e-66
 Identities = 188/206 (91%), Gaps = 3/206 (1%)
 Strand = Plus / Plus

                                                                       
Query: 352 cggcggcggggaaggcaagaaggtggacaacatcgggggcctcccgagcctggacgtcct 411
           |||||||||||||||||||||||||||   ||||| ||||||||||||||| ||||| ||
Sbjct: 364 cggcggcggggaaggcaagaaggtggatggcatcgcgggcctcccgagcctcgacgtgct 423

                                                                       
Query: 412 cagcgccatgggccacagcgcccacaccatcttcgcgctcccgagccaggacggcaagtg 471
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cagcgccatgggccaccgcgcgcacaccatcttcgcgctcccgagccaggacggcaagtg 483

                                                                       
Query: 472 gcgcgcgctccgcaagttcgccgccgcagagatgctcgcgcccaggcggatc---tccgc 528
           ||||||||||||||||||||||||||| ||||||||||||||  ||||||||   |||||
Sbjct: 484 gcgcgcgctccgcaagttcgccgccgccgagatgctcgcgccgcggcggatctcgtccgc 543

                                     
Query: 529 cggggccggggcgctgctgcagacca 554
            | |||||| |||| |||||||||||
Sbjct: 544 ggcggccggcgcgcagctgcagacca 569
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 96/116 (82%)
 Strand = Plus / Minus

                                                                           
Query: 132     tgtacgtcttccagttgctccgtgacgctcgcccgcgtcttccccctggcccctggccgc 191
               ||||||||||||||||| ||   || || ||||  || ||||| || ||||| |||||||
Sbjct: 7872553 tgtacgtcttccagttgttcgccgatgcgcgccgccgccttccacccggcccatggccgc 7872494

                                                                       
Query: 192     cgaagccgctcatcggcgacctcctcgacctcggggaggatggccagcagcaccgc 247
               ||||||| ||||||||||||||||| | ||| ||| |||  | |||||||||||||
Sbjct: 7872493 cgaagcctctcatcggcgacctccttgcccttgggaagggcgaccagcagcaccgc 7872438



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 195     agccgctcatcggcgacctcctcgacctcgg 225
               |||||||||||||| || |||||||||||||
Sbjct: 7804566 agccgctcatcggcaacatcctcgacctcgg 7804536



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                   
Query: 469     gtggcgcgcgctccgcaagttcgccgccgcagagatgctcgcgcccaggcgg 520
               |||||||||  |||| | |||| || |||| ||| |||||||||||||||||
Sbjct: 7872228 gtggcgcgccatccggaggttctccaccgcggagctgctcgcgcccaggcgg 7872177
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 96/116 (82%)
 Strand = Plus / Minus

                                                                           
Query: 132     tgtacgtcttccagttgctccgtgacgctcgcccgcgtcttccccctggcccctggccgc 191
               ||||||||||||||||| ||   || || ||||  || ||||| || ||||| |||||||
Sbjct: 7870388 tgtacgtcttccagttgttcgccgatgcgcgccgccgccttccacccggcccatggccgc 7870329

                                                                       
Query: 192     cgaagccgctcatcggcgacctcctcgacctcggggaggatggccagcagcaccgc 247
               ||||||| ||||||||||||||||| | ||| ||| |||  | |||||||||||||
Sbjct: 7870328 cgaagcctctcatcggcgacctccttgcccttgggaagggcgaccagcagcaccgc 7870273



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 195     agccgctcatcggcgacctcctcgacctcgg 225
               |||||||||||||| || |||||||||||||
Sbjct: 7802401 agccgctcatcggcaacatcctcgacctcgg 7802371



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                   
Query: 469     gtggcgcgcgctccgcaagttcgccgccgcagagatgctcgcgcccaggcgg 520
               |||||||||  |||| | |||| || |||| ||| |||||||||||||||||
Sbjct: 7870063 gtggcgcgccatccggaggttctccaccgcggagctgctcgcgcccaggcgg 7870012
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>gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0030J04, complete sequence
          Length = 153431

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 96/116 (82%)
 Strand = Plus / Minus

                                                                         
Query: 132   tgtacgtcttccagttgctccgtgacgctcgcccgcgtcttccccctggcccctggccgc 191
             ||||||||||||||||| ||   || || ||||  || ||||| || ||||| |||||||
Sbjct: 58151 tgtacgtcttccagttgttcgccgatgcgcgccgccgccttccacccggcccatggccgc 58092

                                                                     
Query: 192   cgaagccgctcatcggcgacctcctcgacctcggggaggatggccagcagcaccgc 247
             ||||||| ||||||||||||||||| | ||| ||| |||  | |||||||||||||
Sbjct: 58091 cgaagcctctcatcggcgacctccttgcccttgggaagggcgaccagcagcaccgc 58036



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                 
Query: 469   gtggcgcgcgctccgcaagttcgccgccgcagagatgctcgcgcccaggcgg 520
             |||||||||  |||| | |||| || |||| ||| |||||||||||||||||
Sbjct: 57826 gtggcgcgccatccggaggttctccaccgcggagctgctcgcgcccaggcgg 57775
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>gb|AF416331.1| Ruegeria sp. PR1b plasmid pSD25, complete sequence
          Length = 148650

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 337   cctgcgcgcggtcttcggcggcg 359
             |||||||||||||||||||||||
Sbjct: 98780 cctgcgcgcggtcttcggcggcg 98758
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>dbj|AK070050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040I08, full
           insert sequence
          Length = 1583

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 195 agccgctcatcggcgacctcctcgacctcgg 225
           |||||||||||||| || |||||||||||||
Sbjct: 97  agccgctcatcggcaacatcctcgacctcgg 127
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>gb|AC118672.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0078P24, from chromosome 3, complete sequence
          Length = 146930

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 195   agccgctcatcggcgacctcctcgacctcgg 225
             |||||||||||||| || |||||||||||||
Sbjct: 49566 agccgctcatcggcaacatcctcgacctcgg 49596
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>emb|CR733495.2|CNS0GSQU Tetraodon nigroviridis full-length cDNA
          Length = 1195

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 362 gaaggcaagaaggtggacaaca 383
           ||||||||||||||||||||||
Sbjct: 105 gaaggcaagaaggtggacaaca 126
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>emb|CR731215.2|CNS0GR5G Tetraodon nigroviridis full-length cDNA
          Length = 1256

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 362 gaaggcaagaaggtggacaaca 383
           ||||||||||||||||||||||
Sbjct: 167 gaaggcaagaaggtggacaaca 188
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>emb|CR730446.2|CNS0GQK3 Tetraodon nigroviridis full-length cDNA
          Length = 1250

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 362 gaaggcaagaaggtggacaaca 383
           ||||||||||||||||||||||
Sbjct: 161 gaaggcaagaaggtggacaaca 182
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>emb|CR728515.2|CNS0GP2H Tetraodon nigroviridis full-length cDNA
          Length = 1288

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 362 gaaggcaagaaggtggacaaca 383
           ||||||||||||||||||||||
Sbjct: 197 gaaggcaagaaggtggacaaca 218
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>emb|CR724128.1|CNS0GLOM Tetraodon nigroviridis full-length cDNA
          Length = 1243

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 362 gaaggcaagaaggtggacaaca 383
           ||||||||||||||||||||||
Sbjct: 162 gaaggcaagaaggtggacaaca 183
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>emb|CR724687.2|CNS0GM45 Tetraodon nigroviridis full-length cDNA
          Length = 1247

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 362 gaaggcaagaaggtggacaaca 383
           ||||||||||||||||||||||
Sbjct: 165 gaaggcaagaaggtggacaaca 186
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>emb|CR700659.1|CNS0G3KV Tetraodon nigroviridis full-length cDNA
          Length = 1200

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 362 gaaggcaagaaggtggacaaca 383
           ||||||||||||||||||||||
Sbjct: 112 gaaggcaagaaggtggacaaca 133
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>gb|AY260902.1| Rhodospirillum centenum che2 gene cluster, complete sequence
          Length = 11332

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 246  gcgcgttccagcgcctggccg 266
            |||||||||||||||||||||
Sbjct: 2815 gcgcgttccagcgcctggccg 2795
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 220    cctcggggaggatggccagca 240
              |||||||||||||||||||||
Sbjct: 677079 cctcggggaggatggccagca 677099
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 233     ggccagcagcaccgcgcgttc 253
               |||||||||||||||||||||
Sbjct: 1291311 ggccagcagcaccgcgcgttc 1291331
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>gb|AE004627.1| Pseudomonas aeruginosa PAO1, section 188 of 529 of the complete
           genome
          Length = 12776

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 233 ggccagcagcaccgcgcgttccagc 257
           ||||||||||| |||||||||||||
Sbjct: 447 ggccagcagcagcgcgcgttccagc 471
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 413     agcgccatgggccacagcgcc 433
               |||||||||||||||||||||
Sbjct: 4660342 agcgccatgggccacagcgcc 4660362
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 258     gcctggccgaccgctatggtg 278
               |||||||||||||||||||||
Sbjct: 6078300 gcctggccgaccgctatggtg 6078280
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>emb|AM156932.1| Streptomyces steffisburgensis cluster for steffimycin biosynthesis,
            strain NRRL 3193
          Length = 42877

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  cggacgccctgcgcgcggtcttcgg 354
            |||||||||||||| ||||||||||
Sbjct: 6695 cggacgccctgcgcacggtcttcgg 6671
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 524     tccgccggggccggggcgctgctg 547
               ||||||||| ||||||||||||||
Sbjct: 1561915 tccgccgggaccggggcgctgctg 1561938



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    agcaccgcgcgttccagcgc 259
              ||||||||||||||||||||
Sbjct: 922894 agcaccgcgcgttccagcgc 922913
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>ref|NM_195945.1| Oryza sativa (japonica cultivar-group) putative Cytochrome P450
           (OSJNBb0023M11.14), mRNA
          Length = 1557

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 197 ccgctcatcggcgacctcctcgac 220
           |||||||||||| |||||||||||
Sbjct: 115 ccgctcatcggcaacctcctcgac 138
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>ref|XM_588354.2| PREDICTED: Bos taurus similar to obscurin, cytoskeletal calmodulin
           and titin-interacting RhoGEF (LOC511087), mRNA
          Length = 4626

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 531 gggccggggcgctgctgcag 550
           ||||||||||||||||||||
Sbjct: 659 gggccggggcgctgctgcag 678
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>gb|AE009206.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 232 of
             256 of the complete sequence
          Length = 12965

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 533   gccggggcgctgctgcagac 552
             ||||||||||||||||||||
Sbjct: 12446 gccggggcgctgctgcagac 12465
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>gb|AC135923.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0479C09,
             complete sequence
          Length = 156776

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 351   tcggcggcggggaaggcaag 370
             ||||||||||||||||||||
Sbjct: 79894 tcggcggcggggaaggcaag 79913
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>gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosynthetic gene cluster,
             complete sequence
          Length = 135638

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   cgcgttccagcgcctggccg 266
             ||||||||||||||||||||
Sbjct: 84466 cgcgttccagcgcctggccg 84485
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>gb|AF142435.1| Frankia sp. ACN14a/ts-r 20S proteasome beta-subunit precursor (prcB)
            and 20S proteasome alpha-subunit (prcA) genes, complete
            cds; putative dienelactone hydrolase-like protein gene,
            partial cds; and unknown genes
          Length = 4725

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 205  cggcgacctcctcgacctcg 224
            ||||||||||||||||||||
Sbjct: 2137 cggcgacctcctcgacctcg 2118
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>emb|AL136991.26| Human DNA sequence from clone RP11-189J1 on chromosome 20 Contains the 3'
              end of the gene for a novel protein (LOC284776), complete
              sequence
          Length = 169342

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     aaatggcctccttccttgtt 94
              ||||||||||||||||||||
Sbjct: 116466 aaatggcctccttccttgtt 116447
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>emb|AL121891.22|HS1187M17 Human DNA sequence from clone RP5-1187M17 on chromosome 20 Contains the
              5' end of the AVP gene for arginine vasopressin
              (neurophysin II), the gene KIAA0860 for a likely ortholog
              of mouse ubiquitin conjugating enzyme a novel gene 7
              interacting protein 5, a novel gene (FLJ3149), a novel gene
              (KIAA0552), the C20orf116 gene, the 5' end of the ITPA gene
              for inosine triphosphatase (nucleoside triphosphate
              pyrophosphatase), a novel transcript and nine CpG islands,
              complete sequence
          Length = 125856

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 386    gggggcctcccgagcctgga 405
              ||||||||||||||||||||
Sbjct: 124464 gggggcctcccgagcctgga 124445
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>emb|X89726.1|RLCYCHJKL R.leguminosarum DNA for cycH, cycJ, cycK and cycL genes
          Length = 4237

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 227  gaggatggccagcagcaccg 246
            ||||||||||||||||||||
Sbjct: 2581 gaggatggccagcagcaccg 2562
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>emb|CR933498.1|OSJN00303 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1168G10, complete
              sequence
          Length = 142295

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 351    tcggcggcggggaaggcaag 370
              ||||||||||||||||||||
Sbjct: 138554 tcggcggcggggaaggcaag 138573
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>emb|AL662990.3|OSJN00194 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015C06,
             complete sequence
          Length = 147676

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 351   tcggcggcggggaaggcaag 370
             ||||||||||||||||||||
Sbjct: 72299 tcggcggcggggaaggcaag 72318
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>gb|DQ088847.1| Uncultured bacterium MedeBAC46A06 clone MedeBAC46A06, partial sequence
          Length = 68835

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 288   gcctccgcttcggcatggtg 307
             ||||||||||||||||||||
Sbjct: 14403 gcctccgcttcggcatggtg 14384
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 257     cgcctggccgaccgctatgg 276
               ||||||||||||||||||||
Sbjct: 1357956 cgcctggccgaccgctatgg 1357937
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>gb|AC092749.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OSJNBb0023M11, from chromosome 10,
             complete sequence
          Length = 138668

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 197   ccgctcatcggcgacctcctcgac 220
             |||||||||||| |||||||||||
Sbjct: 71034 ccgctcatcggcaacctcctcgac 71011
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 533     gccggggcgctgctgcagac 552
               ||||||||||||||||||||
Sbjct: 2579475 gccggggcgctgctgcagac 2579494
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    cccctggccgccgaagccgc 200
              ||||||||||||||||||||
Sbjct: 235014 cccctggccgccgaagccgc 235033
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 351     tcggcggcggggaaggcaag 370
               ||||||||||||||||||||
Sbjct: 4959892 tcggcggcggggaaggcaag 4959911
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 197      ccgctcatcggcgacctcctcgac 220
                |||||||||||| |||||||||||
Sbjct: 10150813 ccgctcatcggcaacctcctcgac 10150790
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 351      tcggcggcggggaaggcaag 370
                ||||||||||||||||||||
Sbjct: 11754254 tcggcggcggggaaggcaag 11754273
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>gb|AY179507.1| Streptomyces hygroscopicus strain NRRL 3602 geldanamycin biosynthesis
             gene cluster, partial sequence
          Length = 69644

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   ccggacgccctgcgcgcggt 348
             ||||||||||||||||||||
Sbjct: 69588 ccggacgccctgcgcgcggt 69607
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>gb|AE005015.1| Halobacterium sp. NRC-1 section 46 of 170 of the complete genome
          Length = 10048

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 252  tccagcgcctggccgaccgc 271
            ||||||||||||||||||||
Sbjct: 7577 tccagcgcctggccgaccgc 7596
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>emb|Y13146.1|STVTAXREX Simian T-cell lymphotropic virus type I DNA for tax/rex region
          Length = 709

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 72  gcaaaatggcctccttcctt 91
           ||||||||||||||||||||
Sbjct: 634 gcaaaatggcctccttcctt 653
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 257     cgcctggccgaccgctatgg 276
               ||||||||||||||||||||
Sbjct: 2166007 cgcctggccgaccgctatgg 2165988
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>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds;
            chivosazol biosynthetic gene cluster, complete sequence;
            and hypothetical protein gene, complete cds
          Length = 96547

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 211  cctcctcgacctcggggagg 230
            ||||||||||||||||||||
Sbjct: 3883 cctcctcgacctcggggagg 3864
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 257     cgcctggccgaccgctatgg 276
               ||||||||||||||||||||
Sbjct: 1381543 cgcctggccgaccgctatgg 1381524
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>emb|AJ628018.2| Streptomyces sp. SCC 2136 deoxysugar biosynthetic gene cluster
          Length = 77550

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 331   ggacgccctgcgcgcggtcttcgg 354
             |||||||||||||||||| |||||
Sbjct: 46902 ggacgccctgcgcgcggtgttcgg 46879
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 489     tcgccgccgcagagatgctc 508
               ||||||||||||||||||||
Sbjct: 1824188 tcgccgccgcagagatgctc 1824207
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 197      ccgctcatcggcgacctcctcgac 220
                |||||||||||| |||||||||||
Sbjct: 10156852 ccgctcatcggcaacctcctcgac 10156829


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,897,351
Number of Sequences: 3902068
Number of extensions: 3897351
Number of successful extensions: 85591
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83987
Number of HSP's gapped (non-prelim): 1597
length of query: 554
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 531
effective length of database: 17,143,297,704
effective search space: 9103091080824
effective search space used: 9103091080824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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