ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart21d01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197592.1| Oryza sativa (japonica cultivar-group) putative pollen allergen (OSJNBb0015I11.10), mRNA Length = 898 Score = 121 bits (61), Expect = 2e-24 Identities = 173/213 (81%), Gaps = 6/213 (2%) Strand = Plus / Plus Query: 224 gccggctcctgcgggtacggctccctggcggcgaccttcaacggcgggctcctcgcggcc 283 ||||| || ||||||||||||||||| || ||| ||||||||||||| | |||||| ||| Sbjct: 221 gccggttcttgcgggtacggctccctcgccgcgtccttcaacggcggccacctcgccgcc 280 Query: 284 gcgagccccgcgctgtacannnnnnncgtcggctgcggcgcgtgctacagggtccggtgc 343 |||||||| ||||||| || |||||||||||||| |||| | ||| |||||| Sbjct: 281 gcgagcccggcgctgttcaggggcggtgtcggctgcggcgcctgcttccaggtgcggtgc 340 Query: 344 acggacgccgagctctgcagcgcggcgggcaccacggtggtcgtggcggaccaggcgcgc 403 | ||||| | |||| |||||| |||||||| ||| |||||||||| ||||| |||||| Sbjct: 341 aaggacggcaagctgtgcagcacggcgggcgccaaggtggtcgtgacggacgaggcgc-- 398 Query: 404 acgggcgcgacgaaccgcaccgacctcgtgctg 436 | |||||||||||||||||||||||||| Sbjct: 399 ----ggtcgacgaaccgcaccgacctcgtgctg 427
>dbj|AK068088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131C11, full insert sequence Length = 1196 Score = 121 bits (61), Expect = 2e-24 Identities = 173/213 (81%), Gaps = 6/213 (2%) Strand = Plus / Plus Query: 224 gccggctcctgcgggtacggctccctggcggcgaccttcaacggcgggctcctcgcggcc 283 ||||| || ||||||||||||||||| || ||| ||||||||||||| | |||||| ||| Sbjct: 405 gccggttcttgcgggtacggctccctcgccgcgtccttcaacggcggccacctcgccgcc 464 Query: 284 gcgagccccgcgctgtacannnnnnncgtcggctgcggcgcgtgctacagggtccggtgc 343 |||||||| ||||||| || |||||||||||||| |||| | ||| |||||| Sbjct: 465 gcgagcccggcgctgttcaggggcggtgtcggctgcggcgcctgcttccaggtgcggtgc 524 Query: 344 acggacgccgagctctgcagcgcggcgggcaccacggtggtcgtggcggaccaggcgcgc 403 | ||||| | |||| |||||| |||||||| ||| |||||||||| ||||| |||||| Sbjct: 525 aaggacggcaagctgtgcagcacggcgggcgccaaggtggtcgtgacggacgaggcgc-- 582 Query: 404 acgggcgcgacgaaccgcaccgacctcgtgctg 436 | |||||||||||||||||||||||||| Sbjct: 583 ----ggtcgacgaaccgcaccgacctcgtgctg 611
>dbj|AK066611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071J19, full insert sequence Length = 1023 Score = 121 bits (61), Expect = 2e-24 Identities = 173/213 (81%), Gaps = 6/213 (2%) Strand = Plus / Plus Query: 224 gccggctcctgcgggtacggctccctggcggcgaccttcaacggcgggctcctcgcggcc 283 ||||| || ||||||||||||||||| || ||| ||||||||||||| | |||||| ||| Sbjct: 237 gccggttcttgcgggtacggctccctcgccgcgtccttcaacggcggccacctcgccgcc 296 Query: 284 gcgagccccgcgctgtacannnnnnncgtcggctgcggcgcgtgctacagggtccggtgc 343 |||||||| ||||||| || |||||||||||||| |||| | ||| |||||| Sbjct: 297 gcgagcccggcgctgttcaggggcggtgtcggctgcggcgcctgcttccaggtgcggtgc 356 Query: 344 acggacgccgagctctgcagcgcggcgggcaccacggtggtcgtggcggaccaggcgcgc 403 | ||||| | |||| |||||| |||||||| ||| |||||||||| ||||| |||||| Sbjct: 357 aaggacggcaagctgtgcagcacggcgggcgccaaggtggtcgtgacggacgaggcgc-- 414 Query: 404 acgggcgcgacgaaccgcaccgacctcgtgctg 436 | |||||||||||||||||||||||||| Sbjct: 415 ----ggtcgacgaaccgcaccgacctcgtgctg 443
>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete sequence Length = 138824 Score = 79.8 bits (40), Expect = 8e-12 Identities = 67/76 (88%) Strand = Plus / Plus Query: 224 gccggctcctgcgggtacggctccctggcggcgaccttcaacggcgggctcctcgcggcc 283 ||||| || ||||||||||||||||| || ||| ||||||||||||| | |||||| ||| Sbjct: 62360 gccggttcttgcgggtacggctccctcgccgcgtccttcaacggcggccacctcgccgcc 62419 Query: 284 gcgagccccgcgctgt 299 |||||||| ||||||| Sbjct: 62420 gcgagcccggcgctgt 62435 Score = 63.9 bits (32), Expect = 5e-07 Identities = 82/99 (82%), Gaps = 6/99 (6%) Strand = Plus / Plus Query: 338 cggtgcacggacgccgagctctgcagcgcggcgggcaccacggtggtcgtggcggaccag 397 ||||||| ||||| | |||| |||||| |||||||| ||| |||||||||| ||||| || Sbjct: 62591 cggtgcaaggacggcaagctgtgcagcacggcgggcgccaaggtggtcgtgacggacgag 62650 Query: 398 gcgcgcacgggcgcgacgaaccgcaccgacctcgtgctg 436 ||||| || |||||||||||||||||||||||| Sbjct: 62651 gcgcggtcg------acgaaccgcaccgacctcgtgctg 62683
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 79.8 bits (40), Expect = 8e-12 Identities = 67/76 (88%) Strand = Plus / Plus Query: 224 gccggctcctgcgggtacggctccctggcggcgaccttcaacggcgggctcctcgcggcc 283 ||||| || ||||||||||||||||| || ||| ||||||||||||| | |||||| ||| Sbjct: 20660908 gccggttcttgcgggtacggctccctcgccgcgtccttcaacggcggccacctcgccgcc 20660967 Query: 284 gcgagccccgcgctgt 299 |||||||| ||||||| Sbjct: 20660968 gcgagcccggcgctgt 20660983 Score = 63.9 bits (32), Expect = 5e-07 Identities = 82/99 (82%), Gaps = 6/99 (6%) Strand = Plus / Plus Query: 338 cggtgcacggacgccgagctctgcagcgcggcgggcaccacggtggtcgtggcggaccag 397 ||||||| ||||| | |||| |||||| |||||||| ||| |||||||||| ||||| || Sbjct: 20661139 cggtgcaaggacggcaagctgtgcagcacggcgggcgccaaggtggtcgtgacggacgag 20661198 Query: 398 gcgcgcacgggcgcgacgaaccgcaccgacctcgtgctg 436 ||||| || |||||||||||||||||||||||| Sbjct: 20661199 gcgcggtcg------acgaaccgcaccgacctcgtgctg 20661231
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 79.8 bits (40), Expect = 8e-12 Identities = 67/76 (88%) Strand = Plus / Plus Query: 224 gccggctcctgcgggtacggctccctggcggcgaccttcaacggcgggctcctcgcggcc 283 ||||| || ||||||||||||||||| || ||| ||||||||||||| | |||||| ||| Sbjct: 20672180 gccggttcttgcgggtacggctccctcgccgcgtccttcaacggcggccacctcgccgcc 20672239 Query: 284 gcgagccccgcgctgt 299 |||||||| ||||||| Sbjct: 20672240 gcgagcccggcgctgt 20672255 Score = 63.9 bits (32), Expect = 5e-07 Identities = 82/99 (82%), Gaps = 6/99 (6%) Strand = Plus / Plus Query: 338 cggtgcacggacgccgagctctgcagcgcggcgggcaccacggtggtcgtggcggaccag 397 ||||||| ||||| | |||| |||||| |||||||| ||| |||||||||| ||||| || Sbjct: 20672411 cggtgcaaggacggcaagctgtgcagcacggcgggcgccaaggtggtcgtgacggacgag 20672470 Query: 398 gcgcgcacgggcgcgacgaaccgcaccgacctcgtgctg 436 ||||| || |||||||||||||||||||||||| Sbjct: 20672471 gcgcggtcg------acgaaccgcaccgacctcgtgctg 20672503
>ref|XM_470185.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 870 Score = 58.0 bits (29), Expect = 3e-05 Identities = 139/175 (79%), Gaps = 6/175 (3%) Strand = Plus / Plus Query: 160 ctgcgaccgctgcgtgcgccggtccaacgcggcgtaccgcgcctcctcgcccgccctcga 219 ||||||||||||||||||||| |||| ||||| ||| | ||||||||| | | || || Sbjct: 105 ctgcgaccgctgcgtgcgccgctccagagcggcttactacacctcctcgctcacgct-ga 163 Query: 220 caatgccggctcctgcgggtacggctccctggcggcgaccttcaacggcgggc---tcct 276 | |||||| || |||||||| ||| | ||| ||||||||||||||||| |||| Sbjct: 164 c--tgccggttcttgcgggtatggcacggcggccgcgaccttcaacggcggcggattcct 221 Query: 277 cgcggccgcgagccccgcgctgtacannnnnnncgtcggctgcggcgcgtgctac 331 ||| |||||| |||||||||||||| |||||||||||||||||||||| Sbjct: 222 cgccgccgcgggccccgcgctgtaccggggcggcgtcggctgcggcgcgtgctac 276
>dbj|AK099870.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111F04, full insert sequence Length = 1123 Score = 58.0 bits (29), Expect = 3e-05 Identities = 139/175 (79%), Gaps = 6/175 (3%) Strand = Plus / Plus Query: 160 ctgcgaccgctgcgtgcgccggtccaacgcggcgtaccgcgcctcctcgcccgccctcga 219 ||||||||||||||||||||| |||| ||||| ||| | ||||||||| | | || || Sbjct: 159 ctgcgaccgctgcgtgcgccgctccagagcggcttactacacctcctcgctcacgct-ga 217 Query: 220 caatgccggctcctgcgggtacggctccctggcggcgaccttcaacggcgggc---tcct 276 | |||||| || |||||||| ||| | ||| ||||||||||||||||| |||| Sbjct: 218 c--tgccggttcttgcgggtatggcacggcggccgcgaccttcaacggcggcggattcct 275 Query: 277 cgcggccgcgagccccgcgctgtacannnnnnncgtcggctgcggcgcgtgctac 331 ||| |||||| |||||||||||||| |||||||||||||||||||||| Sbjct: 276 cgccgccgcgggccccgcgctgtaccggggcggcgtcggctgcggcgcgtgctac 330
>dbj|AK067081.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094I23, full insert sequence Length = 1121 Score = 58.0 bits (29), Expect = 3e-05 Identities = 139/175 (79%), Gaps = 6/175 (3%) Strand = Plus / Plus Query: 160 ctgcgaccgctgcgtgcgccggtccaacgcggcgtaccgcgcctcctcgcccgccctcga 219 ||||||||||||||||||||| |||| ||||| ||| | ||||||||| | | || || Sbjct: 159 ctgcgaccgctgcgtgcgccgctccagagcggcttactacacctcctcgctcacgct-ga 217 Query: 220 caatgccggctcctgcgggtacggctccctggcggcgaccttcaacggcgggc---tcct 276 | |||||| || |||||||| ||| | ||| ||||||||||||||||| |||| Sbjct: 218 c--tgccggttcttgcgggtatggcacggcggccgcgaccttcaacggcggcggattcct 275 Query: 277 cgcggccgcgagccccgcgctgtacannnnnnncgtcggctgcggcgcgtgctac 331 ||| |||||| |||||||||||||| |||||||||||||||||||||| Sbjct: 276 cgccgccgcgggccccgcgctgtaccggggcggcgtcggctgcggcgcgtgctac 330
>dbj|AK061453.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-G06, full insert sequence Length = 1120 Score = 58.0 bits (29), Expect = 3e-05 Identities = 139/175 (79%), Gaps = 6/175 (3%) Strand = Plus / Plus Query: 160 ctgcgaccgctgcgtgcgccggtccaacgcggcgtaccgcgcctcctcgcccgccctcga 219 ||||||||||||||||||||| |||| ||||| ||| | ||||||||| | | || || Sbjct: 163 ctgcgaccgctgcgtgcgccgctccagagcggcttactacacctcctcgctcacgct-ga 221 Query: 220 caatgccggctcctgcgggtacggctccctggcggcgaccttcaacggcgggc---tcct 276 | |||||| || |||||||| ||| | ||| ||||||||||||||||| |||| Sbjct: 222 c--tgccggttcttgcgggtatggcacggcggccgcgaccttcaacggcggcggattcct 279 Query: 277 cgcggccgcgagccccgcgctgtacannnnnnncgtcggctgcggcgcgtgctac 331 ||| |||||| |||||||||||||| |||||||||||||||||||||| Sbjct: 280 cgccgccgcgggccccgcgctgtaccggggcggcgtcggctgcggcgcgtgctac 334
>gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1004C08, complete sequence Length = 138054 Score = 52.0 bits (26), Expect = 0.002 Identities = 49/59 (83%) Strand = Plus / Plus Query: 273 tcctcgcggccgcgagccccgcgctgtacannnnnnncgtcggctgcggcgcgtgctac 331 ||||||| |||||| |||||||||||||| |||||||||||||||||||||| Sbjct: 37038 tcctcgccgccgcgggccccgcgctgtaccggggcggcgtcggctgcggcgcgtgctac 37096 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 160 ctgcgaccgctgcgtgcgccggtcca 185 ||||||||||||||||||||| |||| Sbjct: 36816 ctgcgaccgctgcgtgcgccgctcca 36841
>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099P06, complete sequence Length = 135117 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 121 gctcgtcctcttcgccgccgcctcctctcc 150 ||||||||||| |||||||||||||||||| Sbjct: 87202 gctcgtcctctccgccgccgcctcctctcc 87231
>gb|AY100693.1| Oryza sativa (japonica cultivar-group) expansin-like protein A mRNA, partial cds Length = 899 Score = 52.0 bits (26), Expect = 0.002 Identities = 49/59 (83%) Strand = Plus / Plus Query: 273 tcctcgcggccgcgagccccgcgctgtacannnnnnncgtcggctgcggcgcgtgctac 331 ||||||| |||||| |||||||||||||| |||||||||||||||||||||| Sbjct: 20 tcctcgccgccgcgggccccgcgctgtaccggggcggcgtcggctgcggcgcgtgctac 78
>gb|AY039022.1| Oryza sativa expansin-like protein A (EXLA1) gene, complete cds Length = 3998 Score = 52.0 bits (26), Expect = 0.002 Identities = 49/59 (83%) Strand = Plus / Plus Query: 273 tcctcgcggccgcgagccccgcgctgtacannnnnnncgtcggctgcggcgcgtgctac 331 ||||||| |||||| |||||||||||||| |||||||||||||||||||||| Sbjct: 1547 tcctcgccgccgcgggccccgcgctgtaccggggcggcgtcggctgcggcgcgtgctac 1605 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 160 ctgcgaccgctgcgtgcgccggtcca 185 ||||||||||||||||||||| |||| Sbjct: 1325 ctgcgaccgctgcgtgcgccgctcca 1350
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 0.002 Identities = 49/59 (83%) Strand = Plus / Plus Query: 273 tcctcgcggccgcgagccccgcgctgtacannnnnnncgtcggctgcggcgcgtgctac 331 ||||||| |||||| |||||||||||||| |||||||||||||||||||||| Sbjct: 1811399 tcctcgccgccgcgggccccgcgctgtaccggggcggcgtcggctgcggcgcgtgctac 1811457 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 160 ctgcgaccgctgcgtgcgccggtcca 185 ||||||||||||||||||||| |||| Sbjct: 1811177 ctgcgaccgctgcgtgcgccgctcca 1811202 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 cgccgccgcctcctctccggcctc 156 ||||||||||||||| |||||||| Sbjct: 13136704 cgccgccgcctcctcgccggcctc 13136681
>gb|AC098693.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1004C08, complete sequence Length = 133090 Score = 52.0 bits (26), Expect = 0.002 Identities = 49/59 (83%) Strand = Plus / Minus Query: 273 tcctcgcggccgcgagccccgcgctgtacannnnnnncgtcggctgcggcgcgtgctac 331 ||||||| |||||| |||||||||||||| |||||||||||||||||||||| Sbjct: 22963 tcctcgccgccgcgggccccgcgctgtaccggggcggcgtcggctgcggcgcgtgctac 22905 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Minus Query: 160 ctgcgaccgctgcgtgcgccggtcca 185 ||||||||||||||||||||| |||| Sbjct: 23185 ctgcgaccgctgcgtgcgccgctcca 23160
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 121 gctcgtcctcttcgccgccgcctcctctcc 150 ||||||||||| |||||||||||||||||| Sbjct: 3664855 gctcgtcctctccgccgccgcctcctctcc 3664884
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 0.002 Identities = 49/59 (83%) Strand = Plus / Plus Query: 273 tcctcgcggccgcgagccccgcgctgtacannnnnnncgtcggctgcggcgcgtgctac 331 ||||||| |||||| |||||||||||||| |||||||||||||||||||||| Sbjct: 1811397 tcctcgccgccgcgggccccgcgctgtaccggggcggcgtcggctgcggcgcgtgctac 1811455 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 160 ctgcgaccgctgcgtgcgccggtcca 185 ||||||||||||||||||||| |||| Sbjct: 1811175 ctgcgaccgctgcgtgcgccgctcca 1811200 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 cgccgccgcctcctctccggcctc 156 ||||||||||||||| |||||||| Sbjct: 13133479 cgccgccgcctcctcgccggcctc 13133456
>dbj|AK120340.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013060N21, full insert sequence Length = 6226 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 121 gctcgtcctcttcgccgccgcctcctctcc 150 ||||||||||| |||||||||||||||||| Sbjct: 48 gctcgtcctctccgccgccgcctcctctcc 19
>dbj|AK106311.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-D04, full insert sequence Length = 1685 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 121 gctcgtcctcttcgccgccgcctcctctcc 150 ||||||||||| |||||||||||||||||| Sbjct: 132 gctcgtcctctccgccgccgcctcctctcc 103
>dbj|AK073342.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030D14, full insert sequence Length = 2057 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 121 gctcgtcctcttcgccgccgcctcctctcc 150 ||||||||||| |||||||||||||||||| Sbjct: 172 gctcgtcctctccgccgccgcctcctctcc 143
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 104 tcgcgtctggtcctcctgctcgtcctct 131 ||||||| |||||||||||||||||||| Sbjct: 943961 tcgcgtcgggtcctcctgctcgtcctct 943988
>ref|XM_483221.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2107 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 124 cgtcctcttcgccgccgcctcc 145 |||||||||||||||||||||| Sbjct: 701 cgtcctcttcgccgccgcctcc 680
>ref|NM_190631.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 807 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 122 ctcgtcctcttcgccgccgcctcctc 147 |||||||||| ||||||||||||||| Sbjct: 199 ctcgtcctctccgccgccgcctcctc 224
>gb|AY446894.1| Human herpesvirus 5 strain Merlin, complete genome Length = 235645 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 159 cctgcgaccgctgcgtgcgccg 180 |||||||||||||||||||||| Sbjct: 48719 cctgcgaccgctgcgtgcgccg 48698
>gb|AY486472.1|AY486470S03 Human herpesvirus 5 strain Toledo genome, partial sequence Length = 4200 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 159 cctgcgaccgctgcgtgcgccg 180 |||||||||||||||||||||| Sbjct: 2345 cctgcgaccgctgcgtgcgccg 2324
>gb|AC146999.1| Human Herpesvirus 5 AD169-BAC isolate, complete sequence Length = 233739 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 159 cctgcgaccgctgcgtgcgccg 180 |||||||||||||||||||||| Sbjct: 173483 cctgcgaccgctgcgtgcgccg 173504
>gb|AC146907.1| Human Herpesvirus 5 FIX-BAC isolate, complete sequence Length = 229209 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 159 cctgcgaccgctgcgtgcgccg 180 |||||||||||||||||||||| Sbjct: 179457 cctgcgaccgctgcgtgcgccg 179478
>gb|AC146906.1| Human Herpesvirus 5 TR-BAC isolate, complete sequence Length = 234881 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 159 cctgcgaccgctgcgtgcgccg 180 |||||||||||||||||||||| Sbjct: 84414 cctgcgaccgctgcgtgcgccg 84393
>gb|AC146905.1| Human Herpesvirus 5 Toledo-BAC isolate, complete sequence Length = 226889 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 159 cctgcgaccgctgcgtgcgccg 180 |||||||||||||||||||||| Sbjct: 174887 cctgcgaccgctgcgtgcgccg 174908
>gb|AC146904.1| Human Herpesvirus 5 PH-BAC isolate, complete sequence Length = 229700 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 159 cctgcgaccgctgcgtgcgccg 180 |||||||||||||||||||||| Sbjct: 179543 cctgcgaccgctgcgtgcgccg 179564
>gb|AC146851.1| Human Herpesvirus 5 Towne-BAC isolate, complete sequence Length = 229483 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 159 cctgcgaccgctgcgtgcgccg 180 |||||||||||||||||||||| Sbjct: 80577 cctgcgaccgctgcgtgcgccg 80556
>gb|AY315197.1| Human herpesvirus 5 strain Towne, complete genome Length = 231236 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 159 cctgcgaccgctgcgtgcgccg 180 |||||||||||||||||||||| Sbjct: 47273 cctgcgaccgctgcgtgcgccg 47252
>gb|AY335909.1| Human herpesvirus 5 UL36 gene, partial cds Length = 1172 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 159 cctgcgaccgctgcgtgcgccg 180 |||||||||||||||||||||| Sbjct: 1048 cctgcgaccgctgcgtgcgccg 1069
>emb|BX053676.1|CNS09DKW Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC31CA06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 431 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 114 tcctcctgctcgtcctcttcgccgcc 139 ||||||||||| |||||||||||||| Sbjct: 126 tcctcctgctcctcctcttcgccgcc 151
>emb|BX053675.1|CNS09DKV Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC31CA06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1044 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Minus Query: 114 tcctcctgctcgtcctcttcgccgcc 139 ||||||||||| |||||||||||||| Sbjct: 896 tcctcctgctcctcctcttcgccgcc 871
>emb|X17403.1|HEHCMVCG Human cytomegalovirus strain AD169 complete genome Length = 229354 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 159 cctgcgaccgctgcgtgcgccg 180 |||||||||||||||||||||| Sbjct: 48367 cctgcgaccgctgcgtgcgccg 48346
>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29 Length = 292100 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Minus Query: 182 tccaacgcggcgtaccgcgcctcctcgccc 211 |||| |||||||||| |||||||||||||| Sbjct: 214202 tccaccgcggcgtacggcgcctcctcgccc 214173
>emb|AJ621917.1| Oryza sativa (japonica cultivar-group) partial xt gene for beta-1,2-xylosyltransferase, exon 1 Length = 588 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 124 cgtcctcttcgccgccgcctcc 145 |||||||||||||||||||||| Sbjct: 462 cgtcctcttcgccgccgcctcc 441
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 124 cgtcctcttcgccgccgcctcc 145 |||||||||||||||||||||| Sbjct: 24881229 cgtcctcttcgccgccgcctcc 24881208 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 tcgccgccgcctcctctccg 151 |||||||||||||||||||| Sbjct: 5426584 tcgccgccgcctcctctccg 5426603
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 122 ctcgtcctcttcgccgccgcctcctc 147 |||||||||| ||||||||||||||| Sbjct: 36660576 ctcgtcctctccgccgccgcctcctc 36660601 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 116 ctcctgctcgtcctcttcgccgccg 140 ||||||||| ||||||||||||||| Sbjct: 33799688 ctcctgctcctcctcttcgccgccg 33799664 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 cgccgccgcctcctctccggcctc 156 |||||||||||||||||| ||||| Sbjct: 9343924 cgccgccgcctcctctcccgcctc 9343901
>dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529H11 Length = 165969 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 122 ctcgtcctcttcgccgccgcctcctc 147 |||||||||| ||||||||||||||| Sbjct: 133842 ctcgtcctctccgccgccgcctcctc 133867
>dbj|AP004190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1506_F01 Length = 121202 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 124 cgtcctcttcgccgccgcctcc 145 |||||||||||||||||||||| Sbjct: 85675 cgtcctcttcgccgccgcctcc 85654
>dbj|AK101954.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075J17, full insert sequence Length = 2106 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 124 cgtcctcttcgccgccgcctcc 145 |||||||||||||||||||||| Sbjct: 700 cgtcctcttcgccgccgcctcc 679
>dbj|AK101345.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034K18, full insert sequence Length = 1112 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 122 ctcgtcctcttcgccgccgcctcctc 147 |||||||||| ||||||||||||||| Sbjct: 354 ctcgtcctctccgccgccgcctcctc 379
>gb|BC088829.1| Homo sapiens mitogen-activated protein kinase kinase kinase 5, mRNA (cDNA clone MGC:87795 IMAGE:6007002), complete cds Length = 4632 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 cgccgccgcctcctctccggc 153 ||||||||||||||||||||| Sbjct: 232 cgccgccgcctcctctccggc 212
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 358 ctgcagcgcggcgggcaccacggtg 382 ||||||| ||||||||||||||||| Sbjct: 857190 ctgcagcacggcgggcaccacggtg 857214
>ref|NM_190911.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1620 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 116 ctcctgctcgtcctcttcgccgccg 140 ||||||||| ||||||||||||||| Sbjct: 1407 ctcctgctcctcctcttcgccgccg 1383
>gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074E19 map R1938, complete sequence Length = 160847 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 115 cctcctgctcgtcctcttcgccgccgcctcctc 147 |||||| ||| ||||||||||||||||| |||| Sbjct: 98440 cctcctcctcctcctcttcgccgccgccgcctc 98472
>gb|AC133931.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0013M05 map C3, complete sequence Length = 131117 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 113 gtcctcctgctcgtcctcttcgccg 137 |||||||||||||||||| |||||| Sbjct: 2305 gtcctcctgctcgtcctcctcgccg 2329
>gb|AC128642.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OJ1115_A03 map S20262S, complete sequence Length = 149553 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 113 gtcctcctgctcgtcctcttcgccg 137 |||||||||||||||||| |||||| Sbjct: 134099 gtcctcctgctcgtcctcctcgccg 134123
>gb|AY524041.1| Mimulus lewisii floricaula (FLO) mRNA, FLOB paralog, partial cds Length = 1152 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 cgccgccgcctcctctccggc 153 ||||||||||||||||||||| Sbjct: 334 cgccgccgcctcctctccggc 354
>ref|XM_599618.2| PREDICTED: Bos taurus similar to mitogen-activated protein kinase kinase kinase 5 (LOC521357), mRNA Length = 1569 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 cgccgccgcctcctctccggc 153 ||||||||||||||||||||| Sbjct: 887 cgccgccgcctcctctccggc 867
>gb|BC054503.2| Homo sapiens mitogen-activated protein kinase kinase kinase 5, mRNA (cDNA clone MGC:60047 IMAGE:6143181), complete cds Length = 4578 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 cgccgccgcctcctctccggc 153 ||||||||||||||||||||| Sbjct: 178 cgccgccgcctcctctccggc 158
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 503 gagcggcgcgccgtgggcgtg 523 ||||||||||||||||||||| Sbjct: 1266696 gagcggcgcgccgtgggcgtg 1266716
>ref|XM_533420.2| PREDICTED: Canis familiaris similar to mitogen-activated protein kinase kinase kinase 5 (LOC476215), mRNA Length = 4938 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 cgccgccgcctcctctccggc 153 ||||||||||||||||||||| Sbjct: 827 cgccgccgcctcctctccggc 807
>emb|AL121933.15|HSA549D23 Human DNA sequence from clone RP11-549D23 on chromosome 6, complete sequence Length = 185467 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 cgccgccgcctcctctccggc 153 ||||||||||||||||||||| Sbjct: 108243 cgccgccgcctcctctccggc 108263
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 360 gcagcgcggcgggcaccacggtggt 384 ||||||||||||||||| ||||||| Sbjct: 142918 gcagcgcggcgggcaccccggtggt 142894
>dbj|D84476.2| Homo sapiens ASK1 mRNA for apoptosis signal-regulating kinase 1, complete cds Length = 4522 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 cgccgccgcctcctctccggc 153 ||||||||||||||||||||| Sbjct: 137 cgccgccgcctcctctccggc 117
>gb|AY249531.1| Rhodococcus ruber strain P4 alcohol dehydrogenase (adh5) gene, complete cds Length = 1128 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 ccccgtcgatggcgagcgctc 101 ||||||||||||||||||||| Sbjct: 709 ccccgtcgatggcgagcgctc 729
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 126 tcctcttcgccgccgcctcctctccggcc 154 |||||| |||||||||| ||||||||||| Sbjct: 12169740 tcctctccgccgccgccgcctctccggcc 12169768
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 113 gtcctcctgctcgtcctcttcgccg 137 |||||||||||||||||| |||||| Sbjct: 13417746 gtcctcctgctcgtcctcctcgccg 13417770 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 115 cctcctgctcgtcctcttcgccgccgcctcctc 147 |||||| ||| ||||||||||||||||| |||| Sbjct: 2322441 cctcctcctcctcctcttcgccgccgccgcctc 2322473 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 tcctcttcgccgccgcctcc 145 |||||||||||||||||||| Sbjct: 8360047 tcctcttcgccgccgcctcc 8360028
>emb|BX936117.1| Gallus gallus finished cDNA, clone ChEST491p12 Length = 944 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 gcctcctctccggcctctgcc 160 ||||||||||||||||||||| Sbjct: 47 gcctcctctccggcctctgcc 27
>gb|AE004904.1| Pseudomonas aeruginosa PAO1, section 465 of 529 of the complete genome Length = 11038 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 245 tccctggcggcgaccttcaacggcg 269 |||||||||||| |||||||||||| Sbjct: 5416 tccctggcggcggccttcaacggcg 5392
>ref|NM_005923.3| Homo sapiens mitogen-activated protein kinase kinase kinase 5 (MAP3K5), mRNA Length = 5215 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 cgccgccgcctcctctccggc 153 ||||||||||||||||||||| Sbjct: 231 cgccgccgcctcctctccggc 211
>dbj|AP003293.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0691E06 Length = 166497 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 116 ctcctgctcgtcctcttcgccgccg 140 ||||||||| ||||||||||||||| Sbjct: 38735 ctcctgctcctcctcttcgccgccg 38711
>gb|AY605043.1| Homo sapiens apoptosis signal-regulating kinase 1 (MAP3K5) gene, partial cds Length = 3568 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 cgccgccgcctcctctccggc 153 ||||||||||||||||||||| Sbjct: 3435 cgccgccgcctcctctccggc 3415
>dbj|AK119270.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-A10, full insert sequence Length = 3053 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 115 cctcctgctcgtcctcttcgccgccgcctcctc 147 |||||| ||| ||||||||||||||||| |||| Sbjct: 1612 cctcctcctcctcctcttcgccgccgccgcctc 1644
>dbj|AK067867.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124C21, full insert sequence Length = 2469 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 113 gtcctcctgctcgtcctcttcgccg 137 |||||||||||||||||| |||||| Sbjct: 118 gtcctcctgctcgtcctcctcgccg 142
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 113 gtcctcctgctcgtcctcttcgccg 137 |||||||||||||||||| |||||| Sbjct: 13497925 gtcctcctgctcgtcctcctcgccg 13497949 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 115 cctcctgctcgtcctcttcgccgccgcctcctc 147 |||||| ||| ||||||||||||||||| |||| Sbjct: 2330222 cctcctcctcctcctcttcgccgccgccgcctc 2330254 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 tcctcttcgccgccgcctcc 145 |||||||||||||||||||| Sbjct: 8430810 tcctcttcgccgccgcctcc 8430791
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 126 tcctcttcgccgccgcctcctctccggcc 154 |||||| |||||||||| ||||||||||| Sbjct: 12124110 tcctctccgccgccgccgcctctccggcc 12124138
>emb|AL713955.4|CNS07YP3 Oryza sativa chromosome 12, . BAC OSJNBa0017L03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159296 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 126 tcctcttcgccgccgcctcctctccggcc 154 |||||| |||||||||| ||||||||||| Sbjct: 127577 tcctctccgccgccgccgcctctccggcc 127549
>dbj|AB209093.1| Homo sapiens mRNA for mitogen-activated protein kinase kinase kinase 5 variant protein Length = 4723 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 cgccgccgcctcctctccggc 153 ||||||||||||||||||||| Sbjct: 335 cgccgccgcctcctctccggc 315
>ref|NM_188049.1| Oryza sativa (japonica cultivar-group), Ozsa8469 predicted mRNA Length = 978 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 cgccgccgcctcctctccggcctc 156 |||||||||||||||||| ||||| Sbjct: 187 cgccgccgcctcctctcccgcctc 164
>ref|XM_480493.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1632 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 tcgccgccgcctcctctccg 151 |||||||||||||||||||| Sbjct: 1258 tcgccgccgcctcctctccg 1239
>ref|XM_464031.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1356 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 401 cgcacgggcgcgacgaaccgcaccgacc 428 ||||||||| | |||||||||||||||| Sbjct: 476 cgcacgggcaccacgaaccgcaccgacc 449
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 cgcggccgcgagccccgcgc 296 |||||||||||||||||||| Sbjct: 351498 cgcggccgcgagccccgcgc 351479
>ref|XM_517479.1| PREDICTED: Pan troglodytes similar to hypothetical protein (LOC461537), mRNA Length = 3432 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 cgccgccgcctcctctccgg 152 |||||||||||||||||||| Sbjct: 286 cgccgccgcctcctctccgg 305
>gb|AC145365.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0069E11, complete sequence Length = 136959 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 tcctcttcgccgccgcctcc 145 |||||||||||||||||||| Sbjct: 38973 tcctcttcgccgccgcctcc 38954
>ref|NM_009234.5| Mus musculus SRY-box containing gene 11 (Sox11), mRNA Length = 7497 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 cgccgccgcctcctctccgg 152 |||||||||||||||||||| Sbjct: 121 cgccgccgcctcctctccgg 140
>gb|BC055165.1| Danio rerio zgc:63611, mRNA (cDNA clone MGC:63611 IMAGE:5601337), complete cds Length = 1491 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ctcctgctcgtcctcttcgc 135 |||||||||||||||||||| Sbjct: 1383 ctcctgctcgtcctcttcgc 1364
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 ttcgccgccgcctcctctccggcc 154 ||||||||||| |||||||||||| Sbjct: 1644794 ttcgccgccgcatcctctccggcc 1644771
>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07, from chromosome 3, complete sequence Length = 151173 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 cgccgccgcctcctctccggcctc 156 ||||||||||||||| |||||||| Sbjct: 89934 cgccgccgcctcctcgccggcctc 89957
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 tctgcagcgcggcgggcacc 376 |||||||||||||||||||| Sbjct: 251750 tctgcagcgcggcgggcacc 251731
>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09, complete sequence Length = 96079 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 cggtggtcgtggcggaccag 397 |||||||||||||||||||| Sbjct: 22143 cggtggtcgtggcggaccag 22162
>dbj|AK146514.1| Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920019F16 product:SRY-box containing gene 11, full insert sequence Length = 2877 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 cgccgccgcctcctctccgg 152 |||||||||||||||||||| Sbjct: 87 cgccgccgcctcctctccgg 106
>dbj|AK165693.1| Mus musculus 14 days embryo lung cDNA, RIKEN full-length enriched library, clone:G630001I15 product:SRY-box containing gene 11, full insert sequence Length = 2824 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 cgccgccgcctcctctccgg 152 |||||||||||||||||||| Sbjct: 122 cgccgccgcctcctctccgg 141
>dbj|AK165005.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130116M20 product:SRY-box containing gene 11, full insert sequence Length = 2829 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 cgccgccgcctcctctccgg 152 |||||||||||||||||||| Sbjct: 128 cgccgccgcctcctctccgg 147
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 ctgctcgtcctcttcgccgc 138 |||||||||||||||||||| Sbjct: 756178 ctgctcgtcctcttcgccgc 756197
>tpg|BK001484.1| TPA: TPA_exp: Mus musculus SRY-box containing protein (Sox11) mRNA, complete cds Length = 7497 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 cgccgccgcctcctctccgg 152 |||||||||||||||||||| Sbjct: 121 cgccgccgcctcctctccgg 140
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 cggtggtcgtggcggaccag 397 |||||||||||||||||||| Sbjct: 20918920 cggtggtcgtggcggaccag 20918939
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 501 gggagcggcgcgccgtgggcgtgg 524 |||||||||||| ||||||||||| Sbjct: 15026153 gggagcggcgcggcgtgggcgtgg 15026130
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 tgcagcgcggcgggcaccac 378 |||||||||||||||||||| Sbjct: 24279765 tgcagcgcggcgggcaccac 24279746 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ttcgccgccgcctcctctcc 150 |||||||||||||||||||| Sbjct: 2620506 ttcgccgccgcctcctctcc 2620525 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 401 cgcacgggcgcgacgaaccgcaccgacc 428 ||||||||| | |||||||||||||||| Sbjct: 1789221 cgcacgggcaccacgaaccgcaccgacc 1789194
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 502 ggagcggcgcgccgtgggcgtgga 525 ||||| |||||||||||||||||| Sbjct: 2136032 ggagctgcgcgccgtgggcgtgga 2136055
>dbj|AP001081.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0693B08 Length = 140812 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 cgccgccgcctcctctccggcctc 156 |||||||||||||||||| ||||| Sbjct: 14251 cgccgccgcctcctctcccgcctc 14228
>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0667A10 Length = 152237 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 cgccgccgcctcctctccggcctc 156 |||||||||||||||||| ||||| Sbjct: 120518 cgccgccgcctcctctcccgcctc 120495
>dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0056O06 Length = 151038 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 tcgccgccgcctcctctccg 151 |||||||||||||||||||| Sbjct: 96395 tcgccgccgcctcctctccg 96414
>dbj|AP004997.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0030G11 Length = 143943 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 401 cgcacgggcgcgacgaaccgcaccgacc 428 ||||||||| | |||||||||||||||| Sbjct: 107233 cgcacgggcaccacgaaccgcaccgacc 107206
>dbj|AP005444.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0011H01 Length = 165634 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 501 gggagcggcgcgccgtgggcgtgg 524 |||||||||||| ||||||||||| Sbjct: 32057 gggagcggcgcggcgtgggcgtgg 32034
>dbj|AP006159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1157F01 Length = 181639 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 501 gggagcggcgcgccgtgggcgtgg 524 |||||||||||| ||||||||||| Sbjct: 166323 gggagcggcgcggcgtgggcgtgg 166300
>dbj|AP005300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ2055_H10 Length = 119290 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 tgcagcgcggcgggcaccac 378 |||||||||||||||||||| Sbjct: 80153 tgcagcgcggcgggcaccac 80134
>dbj|AP004747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0407A09 Length = 103788 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 tgcagcgcggcgggcaccac 378 |||||||||||||||||||| Sbjct: 9303 tgcagcgcggcgggcaccac 9284
>dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_C03 Length = 103297 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ttcgccgccgcctcctctcc 150 |||||||||||||||||||| Sbjct: 99289 ttcgccgccgcctcctctcc 99308
>dbj|AP005191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0479D12 Length = 148362 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ttcgccgccgcctcctctcc 150 |||||||||||||||||||| Sbjct: 22728 ttcgccgccgcctcctctcc 22747
>dbj|AP004799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0585B01 Length = 133231 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 401 cgcacgggcgcgacgaaccgcaccgacc 428 ||||||||| | |||||||||||||||| Sbjct: 25865 cgcacgggcaccacgaaccgcaccgacc 25838
>dbj|AK107180.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-H02, full insert sequence Length = 1356 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 401 cgcacgggcgcgacgaaccgcaccgacc 428 ||||||||| | |||||||||||||||| Sbjct: 476 cgcacgggcaccacgaaccgcaccgacc 449
>dbj|AK106225.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-A04, full insert sequence Length = 1569 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ttcgccgccgcctcctctcc 150 |||||||||||||||||||| Sbjct: 140 ttcgccgccgcctcctctcc 159
>dbj|AK098855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000I05, full insert sequence Length = 2598 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ttcgccgccgcctcctctcc 150 |||||||||||||||||||| Sbjct: 86 ttcgccgccgcctcctctcc 105
>ref|NM_211749.1| Eremothecium gossypii AGR022Cp (AGR022C), mRNA Length = 1203 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 ctgctcgtcctcttcgccgc 138 |||||||||||||||||||| Sbjct: 315 ctgctcgtcctcttcgccgc 296
>dbj|AK070502.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023051F17, full insert sequence Length = 2601 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ttcgccgccgcctcctctcc 150 |||||||||||||||||||| Sbjct: 86 ttcgccgccgcctcctctcc 105
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 gccgagctctgcagcgcggc 369 |||||||||||||||||||| Sbjct: 3218832 gccgagctctgcagcgcggc 3218851
>dbj|AK065257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J16, full insert sequence Length = 2601 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ttcgccgccgcctcctctcc 150 |||||||||||||||||||| Sbjct: 86 ttcgccgccgcctcctctcc 105
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ggcgagcgctcgatcgcgtc 110 |||||||||||||||||||| Sbjct: 3382261 ggcgagcgctcgatcgcgtc 3382242 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 gcagcgcggcgggcaccacg 379 |||||||||||||||||||| Sbjct: 260092 gcagcgcggcgggcaccacg 260111
>gb|AC158383.3| Mus musculus BAC clone RP23-135O16 from chromosome 12, complete sequence Length = 196552 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 cgccgccgcctcctctccgg 152 |||||||||||||||||||| Sbjct: 155589 cgccgccgcctcctctccgg 155570
>emb|AM179853.1| Hordeum vulgare mRNA for Beta-1,2-xylosyltransferase (xt1 gene) Length = 1942 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 tcctcttcgccgccgcctcc 145 |||||||||||||||||||| Sbjct: 554 tcctcttcgccgccgcctcc 535
>gb|BC108064.1| Danio rerio zgc:122989, mRNA (cDNA clone MGC:122989 IMAGE:7895124), complete cds Length = 1725 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ctcctgctcgtcctcttcgc 135 |||||||||||||||||||| Sbjct: 1561 ctcctgctcgtcctcttcgc 1542
>gb|BC078643.1| Mus musculus SRY-box containing gene 11, mRNA (cDNA clone MGC:78354 IMAGE:30144974), complete cds Length = 2022 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 cgccgccgcctcctctccgg 152 |||||||||||||||||||| Sbjct: 118 cgccgccgcctcctctccgg 137
>gb|AF009414.1|AF009414 Mus musculus SOX11 (Sox11) mRNA, complete cds Length = 2896 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 cgccgccgcctcctctccgg 152 |||||||||||||||||||| Sbjct: 105 cgccgccgcctcctctccgg 124
>ref|NM_001037229.1| Danio rerio zgc:122989 (zgc:122989), mRNA Length = 1725 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ctcctgctcgtcctcttcgc 135 |||||||||||||||||||| Sbjct: 1561 ctcctgctcgtcctcttcgc 1542
>dbj|AB044709.1| Gryllus bimaculatus mRNA for hedgehog protein, partial cds Length = 2963 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 ccaggcgcgcacgggcgcga 413 |||||||||||||||||||| Sbjct: 1114 ccaggcgcgcacgggcgcga 1095 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,570,168 Number of Sequences: 3902068 Number of extensions: 2570168 Number of successful extensions: 69225 Number of sequences better than 10.0: 120 Number of HSP's better than 10.0 without gapping: 130 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66255 Number of HSP's gapped (non-prelim): 2968 length of query: 528 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 505 effective length of database: 17,143,297,704 effective search space: 8657365340520 effective search space used: 8657365340520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
