ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart21c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FUMC_BACSU (P07343) Fumarate hydratase class II (EC 4.2.1.2) (Fu... 35 0.21

>FUMC_BACSU (P07343) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)|
          Length = 462

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = +1

Query: 316 AIGFLRRGSGINRSPE--ETISQN-TEVQGRTSRVNPMKTRLVDNQERPRYLHGSYKYAS 486
           AIG    G+GIN  PE  E +S+  T++ G+T   +P K   + + +   Y HG+ K  +
Sbjct: 224 AIGGTAVGTGINAHPEFGELVSEEITKLTGQTFSSSPNKFHALTSHDEITYAHGALKALA 283

Query: 487 SNVM 498
           +++M
Sbjct: 284 ADLM 287


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,722,217
Number of Sequences: 219361
Number of extensions: 1407677
Number of successful extensions: 2748
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2748
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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