ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart21b11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 567 bits (286), Expect = e-158 Identities = 426/473 (90%), Gaps = 6/473 (1%) Strand = Plus / Minus Query: 124 ggccacgtcgcgccgggcgccggcttcata------ggcctgtggcagctgttcaaccac 177 ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct: 16520133 ggccatgtcgcgccgggcgccggcttcatcctcatcggcatgtggcagctgttcaaccac 16520074 Query: 178 atccggctgttctcgctgcggcccggctcctacgccgcgccggtctggttccccgcgcgc 237 |||||||||||| |||||||||| |||| ||||| |||||||| |||||||| | |||| Sbjct: 16520073 atccggctgttcgcgctgcggccgagctcgtacgcggcgccggtgtggttcccggtgcgc 16520014 Query: 238 ggcgtccgccacctcgagctcatcctcgtcatcgtcggcacgtcgatgtccatcctgatg 297 || || |||||||| |||||||| || || ||||||||| || | || |||||||||||| Sbjct: 16520013 ggggtgcgccacctggagctcatactggtgatcgtcggcgcggctatctccatcctgatg 16519954 Query: 298 gagctcgtgatcggccccgcgaagcaccagccgttcgacgacgacgggaccatcccgtcc 357 |||||||||||||| || |||| ||||||||||||||||||||||||||||||||| ||| Sbjct: 16519953 gagctcgtgatcgggccggcgaggcaccagccgttcgacgacgacgggaccatcccctcc 16519894 Query: 358 gaccacctccacaacttcgagcacgcgtccatctcgctcgccctgctcgcgttcgccgcg 417 |||||||||||||||||||||||||||||||||||||||| ||||| | | ||||||| Sbjct: 16519893 aaccacctccacaacttcgagcacgcgtccatctcgctcgcgctgctggtctacgccgcg 16519834 Query: 418 gtcaccatccacatggacagggtccgggcgccgatgcgggacgccgtgtcgcagctggcc 477 || || |||||||||||||||| | ||||||| ||||| ||||||||||||||||||| | Sbjct: 16519833 gtgactatccacatggacagggccagggcgcccatgcgcgacgccgtgtcgcagctggtc 16519774 Query: 478 gccgccgcggcgttcgcgcagcagctgctcatcttccacctccactccgcggaccacatg 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16519773 gccgccgcggcgttcgcgcagcagctgctcatcttccacctccactccgcggaccacatg 16519714 Query: 538 ggcgtggaggggcagttccactggctgctgcaggccgtcatcgccgtcacgct 590 ||||||||||||||||||||||||||||||||| | || |||||||||||||| Sbjct: 16519713 ggcgtggaggggcagttccactggctgctgcagacggtgatcgccgtcacgct 16519661 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 484 gcggcgttcgcgcagcagctgctcatcttccacctccactccgcggaccacatgggcgtg 543 |||| |||||||||| |||| ||| |||||||| |||||||| | |||||| ||||| Sbjct: 16510948 gcggtgttcgcgcaggagctcctcgtcttccacttccactccaccgaccacgccggcgtc 16510889 Query: 544 gaggggcagttccactggctgctgcagg 571 ||||| |||||||||||||| ||||||| Sbjct: 16510888 gagggccagttccactggctcctgcagg 16510861 Score = 40.1 bits (20), Expect = 8.0 Identities = 95/120 (79%) Strand = Plus / Minus Query: 158 tgtggcagctgttcaaccacatccggctgttctcgctgcggcccggctcctacgccgcgc 217 ||||||| |||||||||||| || ||| ||||| | ||| || | | |||||| ||||| Sbjct: 16511274 tgtggcacctgttcaaccacgtcaagctcttctcccagcgcccggacacctacgtcgcgc 16511215 Query: 218 cggtctggttccccgcgcgcggcgtccgccacctcgagctcatcctcgtcatcgtcggca 277 ||| |||||||||| || |||| ||| |||| |||||| |||| |||||| ||||| Sbjct: 16511214 cggcgtggttccccgtgccgggcgcgcgctacctggagctcgccctcatcatcgccggca 16511155
>dbj|AP005720.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1123_B08 Length = 134028 Score = 567 bits (286), Expect = e-158 Identities = 426/473 (90%), Gaps = 6/473 (1%) Strand = Plus / Minus Query: 124 ggccacgtcgcgccgggcgccggcttcata------ggcctgtggcagctgttcaaccac 177 ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct: 52358 ggccatgtcgcgccgggcgccggcttcatcctcatcggcatgtggcagctgttcaaccac 52299 Query: 178 atccggctgttctcgctgcggcccggctcctacgccgcgccggtctggttccccgcgcgc 237 |||||||||||| |||||||||| |||| ||||| |||||||| |||||||| | |||| Sbjct: 52298 atccggctgttcgcgctgcggccgagctcgtacgcggcgccggtgtggttcccggtgcgc 52239 Query: 238 ggcgtccgccacctcgagctcatcctcgtcatcgtcggcacgtcgatgtccatcctgatg 297 || || |||||||| |||||||| || || ||||||||| || | || |||||||||||| Sbjct: 52238 ggggtgcgccacctggagctcatactggtgatcgtcggcgcggctatctccatcctgatg 52179 Query: 298 gagctcgtgatcggccccgcgaagcaccagccgttcgacgacgacgggaccatcccgtcc 357 |||||||||||||| || |||| ||||||||||||||||||||||||||||||||| ||| Sbjct: 52178 gagctcgtgatcgggccggcgaggcaccagccgttcgacgacgacgggaccatcccctcc 52119 Query: 358 gaccacctccacaacttcgagcacgcgtccatctcgctcgccctgctcgcgttcgccgcg 417 |||||||||||||||||||||||||||||||||||||||| ||||| | | ||||||| Sbjct: 52118 aaccacctccacaacttcgagcacgcgtccatctcgctcgcgctgctggtctacgccgcg 52059 Query: 418 gtcaccatccacatggacagggtccgggcgccgatgcgggacgccgtgtcgcagctggcc 477 || || |||||||||||||||| | ||||||| ||||| ||||||||||||||||||| | Sbjct: 52058 gtgactatccacatggacagggccagggcgcccatgcgcgacgccgtgtcgcagctggtc 51999 Query: 478 gccgccgcggcgttcgcgcagcagctgctcatcttccacctccactccgcggaccacatg 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51998 gccgccgcggcgttcgcgcagcagctgctcatcttccacctccactccgcggaccacatg 51939 Query: 538 ggcgtggaggggcagttccactggctgctgcaggccgtcatcgccgtcacgct 590 ||||||||||||||||||||||||||||||||| | || |||||||||||||| Sbjct: 51938 ggcgtggaggggcagttccactggctgctgcagacggtgatcgccgtcacgct 51886 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 484 gcggcgttcgcgcagcagctgctcatcttccacctccactccgcggaccacatgggcgtg 543 |||| |||||||||| |||| ||| |||||||| |||||||| | |||||| ||||| Sbjct: 43173 gcggtgttcgcgcaggagctcctcgtcttccacttccactccaccgaccacgccggcgtc 43114 Query: 544 gaggggcagttccactggctgctgcagg 571 ||||| |||||||||||||| ||||||| Sbjct: 43113 gagggccagttccactggctcctgcagg 43086 Score = 40.1 bits (20), Expect = 8.0 Identities = 95/120 (79%) Strand = Plus / Minus Query: 158 tgtggcagctgttcaaccacatccggctgttctcgctgcggcccggctcctacgccgcgc 217 ||||||| |||||||||||| || ||| ||||| | ||| || | | |||||| ||||| Sbjct: 43499 tgtggcacctgttcaaccacgtcaagctcttctcccagcgcccggacacctacgtcgcgc 43440 Query: 218 cggtctggttccccgcgcgcggcgtccgccacctcgagctcatcctcgtcatcgtcggca 277 ||| |||||||||| || |||| ||| |||| |||||| |||| |||||| ||||| Sbjct: 43439 cggcgtggttccccgtgccgggcgcgcgctacctggagctcgccctcatcatcgccggca 43380
>dbj|AK066356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065C14, full insert sequence Length = 1038 Score = 567 bits (286), Expect = e-158 Identities = 426/473 (90%), Gaps = 6/473 (1%) Strand = Plus / Plus Query: 124 ggccacgtcgcgccgggcgccggcttcata------ggcctgtggcagctgttcaaccac 177 ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct: 107 ggccatgtcgcgccgggcgccggcttcatcctcatcggcatgtggcagctgttcaaccac 166 Query: 178 atccggctgttctcgctgcggcccggctcctacgccgcgccggtctggttccccgcgcgc 237 |||||||||||| |||||||||| |||| ||||| |||||||| |||||||| | |||| Sbjct: 167 atccggctgttcgcgctgcggccgagctcgtacgcggcgccggtgtggttcccggtgcgc 226 Query: 238 ggcgtccgccacctcgagctcatcctcgtcatcgtcggcacgtcgatgtccatcctgatg 297 || || |||||||| |||||||| || || ||||||||| || | || |||||||||||| Sbjct: 227 ggggtgcgccacctggagctcatactggtgatcgtcggcgcggctatctccatcctgatg 286 Query: 298 gagctcgtgatcggccccgcgaagcaccagccgttcgacgacgacgggaccatcccgtcc 357 |||||||||||||| || |||| ||||||||||||||||||||||||||||||||| ||| Sbjct: 287 gagctcgtgatcgggccggcgaggcaccagccgttcgacgacgacgggaccatcccctcc 346 Query: 358 gaccacctccacaacttcgagcacgcgtccatctcgctcgccctgctcgcgttcgccgcg 417 |||||||||||||||||||||||||||||||||||||||| ||||| | | ||||||| Sbjct: 347 aaccacctccacaacttcgagcacgcgtccatctcgctcgcgctgctggtctacgccgcg 406 Query: 418 gtcaccatccacatggacagggtccgggcgccgatgcgggacgccgtgtcgcagctggcc 477 || || |||||||||||||||| | ||||||| ||||| ||||||||||||||||||| | Sbjct: 407 gtgactatccacatggacagggccagggcgcccatgcgcgacgccgtgtcgcagctggtc 466 Query: 478 gccgccgcggcgttcgcgcagcagctgctcatcttccacctccactccgcggaccacatg 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 467 gccgccgcggcgttcgcgcagcagctgctcatcttccacctccactccgcggaccacatg 526 Query: 538 ggcgtggaggggcagttccactggctgctgcaggccgtcatcgccgtcacgct 590 ||||||||||||||||||||||||||||||||| | || |||||||||||||| Sbjct: 527 ggcgtggaggggcagttccactggctgctgcagacggtgatcgccgtcacgct 579
>dbj|AK061210.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-D03, full insert sequence Length = 1393 Score = 567 bits (286), Expect = e-158 Identities = 426/473 (90%), Gaps = 6/473 (1%) Strand = Plus / Plus Query: 124 ggccacgtcgcgccgggcgccggcttcata------ggcctgtggcagctgttcaaccac 177 ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct: 110 ggccatgtcgcgccgggcgccggcttcatcctcatcggcatgtggcagctgttcaaccac 169 Query: 178 atccggctgttctcgctgcggcccggctcctacgccgcgccggtctggttccccgcgcgc 237 |||||||||||| |||||||||| |||| ||||| |||||||| |||||||| | |||| Sbjct: 170 atccggctgttcgcgctgcggccgagctcgtacgcggcgccggtgtggttcccggtgcgc 229 Query: 238 ggcgtccgccacctcgagctcatcctcgtcatcgtcggcacgtcgatgtccatcctgatg 297 || || |||||||| |||||||| || || ||||||||| || | || |||||||||||| Sbjct: 230 ggggtgcgccacctggagctcatactggtgatcgtcggcgcggctatctccatcctgatg 289 Query: 298 gagctcgtgatcggccccgcgaagcaccagccgttcgacgacgacgggaccatcccgtcc 357 |||||||||||||| || |||| ||||||||||||||||||||||||||||||||| ||| Sbjct: 290 gagctcgtgatcgggccggcgaggcaccagccgttcgacgacgacgggaccatcccctcc 349 Query: 358 gaccacctccacaacttcgagcacgcgtccatctcgctcgccctgctcgcgttcgccgcg 417 |||||||||||||||||||||||||||||||||||||||| ||||| | | ||||||| Sbjct: 350 aaccacctccacaacttcgagcacgcgtccatctcgctcgcgctgctggtctacgccgcg 409 Query: 418 gtcaccatccacatggacagggtccgggcgccgatgcgggacgccgtgtcgcagctggcc 477 || || |||||||||||||||| | ||||||| ||||| ||||||||||||||||||| | Sbjct: 410 gtgactatccacatggacagggccagggcgcccatgcgcgacgccgtgtcgcagctggtc 469 Query: 478 gccgccgcggcgttcgcgcagcagctgctcatcttccacctccactccgcggaccacatg 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 470 gccgccgcggcgttcgcgcagcagctgctcatcttccacctccactccgcggaccacatg 529 Query: 538 ggcgtggaggggcagttccactggctgctgcaggccgtcatcgccgtcacgct 590 ||||||||||||||||||||||||||||||||| | || |||||||||||||| Sbjct: 530 ggcgtggaggggcagttccactggctgctgcagacggtgatcgccgtcacgct 582
>ref|XM_482813.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1265 Score = 206 bits (104), Expect = 6e-50 Identities = 261/311 (83%), Gaps = 8/311 (2%) Strand = Plus / Plus Query: 103 gtagccatgggcacccccgtcggccacgtcgcgccgggcgccggcttcata------ggc 156 |||||||||||||||| ||||||||| ||||||||||||||||||||| | ||| Sbjct: 28 gtagccatgggcaccctcgtcggccatgtcgcgccgggcgccggcttcctcctcgtcggc 87 Query: 157 ctgtggcagctgttcaaccacatccggctgttctcgctgcggcccggctcctacgccgcg 216 |||||||| || | |||||||||| |||| ||| ||| |||| | |||||| |||| Sbjct: 88 ctgtggcacctctacaaccacatcaggctcttcctgctcaggccaaccgcctacgtcgcg 147 Query: 217 ccggtctggttccccgcgcgcggcgtccgccacctcgagctcatcctcgtcatcgtcggc 276 || ||||||||||||| || | | |||| ||||||||||| ||||||||||| |||| Sbjct: 148 cccgtctggttccccgtccggcgagcccgctacctcgagctcgccctcgtcatcgccggc 207 Query: 277 ac-gtcgatgtccatcctgatggagctcgtgatcggccccgcgaagcaccagccgttcga 335 | |||| ||||||||| ||||||||||| ||||||| |||| ||||||||||||||| Sbjct: 208 gccgtcgc-gtccatcctcatggagctcgtcgtcggcccggcgaggcaccagccgttcga 266 Query: 336 cgacgacgggaccatcccgtccgaccacctccacaacttcgagcacgcgtccatctcgct 395 || |||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 267 cgccgacggcaccgtgccgtccgaccacctccacaacttcgagcacgcgtccatctccct 326 Query: 396 cgccctgctcg 406 ||| ||||||| Sbjct: 327 cgcgctgctcg 337 Score = 135 bits (68), Expect = 2e-28 Identities = 116/132 (87%) Strand = Plus / Plus Query: 459 cgccgtgtcgcagctggccgccgccgcggcgttcgcgcagcagctgctcatcttccacct 518 ||||||||||||||| | |||||||| ||||||||||||||||||| | | |||||||| Sbjct: 390 cgccgtgtcgcagctcgtcgccgccgtggcgttcgcgcagcagctgatgctgttccacct 449 Query: 519 ccactccgcggaccacatgggcgtggaggggcagttccactggctgctgcaggccgtcat 578 |||||| ||||||||| ||||||||||||||||| |||| ||||||||||| |||| | Sbjct: 450 ccactcggcggaccacgcgggcgtggaggggcagtaccacctgctgctgcagggcgtcgt 509 Query: 579 cgccgtcacgct 590 ||||||||||| Sbjct: 510 ggccgtcacgct 521
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 206 bits (104), Expect = 6e-50 Identities = 261/311 (83%), Gaps = 8/311 (2%) Strand = Plus / Minus Query: 103 gtagccatgggcacccccgtcggccacgtcgcgccgggcgccggcttcata------ggc 156 |||||||||||||||| ||||||||| ||||||||||||||||||||| | ||| Sbjct: 22705335 gtagccatgggcaccctcgtcggccatgtcgcgccgggcgccggcttcctcctcgtcggc 22705276 Query: 157 ctgtggcagctgttcaaccacatccggctgttctcgctgcggcccggctcctacgccgcg 216 |||||||| || | |||||||||| |||| ||| ||| |||| | |||||| |||| Sbjct: 22705275 ctgtggcacctctacaaccacatcaggctcttcctgctcaggccaaccgcctacgtcgcg 22705216 Query: 217 ccggtctggttccccgcgcgcggcgtccgccacctcgagctcatcctcgtcatcgtcggc 276 || ||||||||||||| || | | |||| ||||||||||| ||||||||||| |||| Sbjct: 22705215 cccgtctggttccccgtccggcgagcccgctacctcgagctcgccctcgtcatcgccggc 22705156 Query: 277 ac-gtcgatgtccatcctgatggagctcgtgatcggccccgcgaagcaccagccgttcga 335 | |||| ||||||||| ||||||||||| ||||||| |||| ||||||||||||||| Sbjct: 22705155 gccgtcgc-gtccatcctcatggagctcgtcgtcggcccggcgaggcaccagccgttcga 22705097 Query: 336 cgacgacgggaccatcccgtccgaccacctccacaacttcgagcacgcgtccatctcgct 395 || |||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 22705096 cgccgacggcaccgtgccgtccgaccacctccacaacttcgagcacgcgtccatctccct 22705037 Query: 396 cgccctgctcg 406 ||| ||||||| Sbjct: 22705036 cgcgctgctcg 22705026 Score = 135 bits (68), Expect = 2e-28 Identities = 116/132 (87%) Strand = Plus / Minus Query: 459 cgccgtgtcgcagctggccgccgccgcggcgttcgcgcagcagctgctcatcttccacct 518 ||||||||||||||| | |||||||| ||||||||||||||||||| | | |||||||| Sbjct: 22704973 cgccgtgtcgcagctcgtcgccgccgtggcgttcgcgcagcagctgatgctgttccacct 22704914 Query: 519 ccactccgcggaccacatgggcgtggaggggcagttccactggctgctgcaggccgtcat 578 |||||| ||||||||| ||||||||||||||||| |||| ||||||||||| |||| | Sbjct: 22704913 ccactcggcggaccacgcgggcgtggaggggcagtaccacctgctgctgcagggcgtcgt 22704854 Query: 579 cgccgtcacgct 590 ||||||||||| Sbjct: 22704853 ggccgtcacgct 22704842
>dbj|AP005871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1116H04 Length = 140142 Score = 206 bits (104), Expect = 6e-50 Identities = 261/311 (83%), Gaps = 8/311 (2%) Strand = Plus / Minus Query: 103 gtagccatgggcacccccgtcggccacgtcgcgccgggcgccggcttcata------ggc 156 |||||||||||||||| ||||||||| ||||||||||||||||||||| | ||| Sbjct: 31977 gtagccatgggcaccctcgtcggccatgtcgcgccgggcgccggcttcctcctcgtcggc 31918 Query: 157 ctgtggcagctgttcaaccacatccggctgttctcgctgcggcccggctcctacgccgcg 216 |||||||| || | |||||||||| |||| ||| ||| |||| | |||||| |||| Sbjct: 31917 ctgtggcacctctacaaccacatcaggctcttcctgctcaggccaaccgcctacgtcgcg 31858 Query: 217 ccggtctggttccccgcgcgcggcgtccgccacctcgagctcatcctcgtcatcgtcggc 276 || ||||||||||||| || | | |||| ||||||||||| ||||||||||| |||| Sbjct: 31857 cccgtctggttccccgtccggcgagcccgctacctcgagctcgccctcgtcatcgccggc 31798 Query: 277 ac-gtcgatgtccatcctgatggagctcgtgatcggccccgcgaagcaccagccgttcga 335 | |||| ||||||||| ||||||||||| ||||||| |||| ||||||||||||||| Sbjct: 31797 gccgtcgc-gtccatcctcatggagctcgtcgtcggcccggcgaggcaccagccgttcga 31739 Query: 336 cgacgacgggaccatcccgtccgaccacctccacaacttcgagcacgcgtccatctcgct 395 || |||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 31738 cgccgacggcaccgtgccgtccgaccacctccacaacttcgagcacgcgtccatctccct 31679 Query: 396 cgccctgctcg 406 ||| ||||||| Sbjct: 31678 cgcgctgctcg 31668 Score = 135 bits (68), Expect = 2e-28 Identities = 116/132 (87%) Strand = Plus / Minus Query: 459 cgccgtgtcgcagctggccgccgccgcggcgttcgcgcagcagctgctcatcttccacct 518 ||||||||||||||| | |||||||| ||||||||||||||||||| | | |||||||| Sbjct: 31615 cgccgtgtcgcagctcgtcgccgccgtggcgttcgcgcagcagctgatgctgttccacct 31556 Query: 519 ccactccgcggaccacatgggcgtggaggggcagttccactggctgctgcaggccgtcat 578 |||||| ||||||||| ||||||||||||||||| |||| ||||||||||| |||| | Sbjct: 31555 ccactcggcggaccacgcgggcgtggaggggcagtaccacctgctgctgcagggcgtcgt 31496 Query: 579 cgccgtcacgct 590 ||||||||||| Sbjct: 31495 ggccgtcacgct 31484
>dbj|AP005405.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1111C03 Length = 144879 Score = 206 bits (104), Expect = 6e-50 Identities = 261/311 (83%), Gaps = 8/311 (2%) Strand = Plus / Minus Query: 103 gtagccatgggcacccccgtcggccacgtcgcgccgggcgccggcttcata------ggc 156 |||||||||||||||| ||||||||| ||||||||||||||||||||| | ||| Sbjct: 74129 gtagccatgggcaccctcgtcggccatgtcgcgccgggcgccggcttcctcctcgtcggc 74070 Query: 157 ctgtggcagctgttcaaccacatccggctgttctcgctgcggcccggctcctacgccgcg 216 |||||||| || | |||||||||| |||| ||| ||| |||| | |||||| |||| Sbjct: 74069 ctgtggcacctctacaaccacatcaggctcttcctgctcaggccaaccgcctacgtcgcg 74010 Query: 217 ccggtctggttccccgcgcgcggcgtccgccacctcgagctcatcctcgtcatcgtcggc 276 || ||||||||||||| || | | |||| ||||||||||| ||||||||||| |||| Sbjct: 74009 cccgtctggttccccgtccggcgagcccgctacctcgagctcgccctcgtcatcgccggc 73950 Query: 277 ac-gtcgatgtccatcctgatggagctcgtgatcggccccgcgaagcaccagccgttcga 335 | |||| ||||||||| ||||||||||| ||||||| |||| ||||||||||||||| Sbjct: 73949 gccgtcgc-gtccatcctcatggagctcgtcgtcggcccggcgaggcaccagccgttcga 73891 Query: 336 cgacgacgggaccatcccgtccgaccacctccacaacttcgagcacgcgtccatctcgct 395 || |||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 73890 cgccgacggcaccgtgccgtccgaccacctccacaacttcgagcacgcgtccatctccct 73831 Query: 396 cgccctgctcg 406 ||| ||||||| Sbjct: 73830 cgcgctgctcg 73820 Score = 135 bits (68), Expect = 2e-28 Identities = 116/132 (87%) Strand = Plus / Minus Query: 459 cgccgtgtcgcagctggccgccgccgcggcgttcgcgcagcagctgctcatcttccacct 518 ||||||||||||||| | |||||||| ||||||||||||||||||| | | |||||||| Sbjct: 73767 cgccgtgtcgcagctcgtcgccgccgtggcgttcgcgcagcagctgatgctgttccacct 73708 Query: 519 ccactccgcggaccacatgggcgtggaggggcagttccactggctgctgcaggccgtcat 578 |||||| ||||||||| ||||||||||||||||| |||| ||||||||||| |||| | Sbjct: 73707 ccactcggcggaccacgcgggcgtggaggggcagtaccacctgctgctgcagggcgtcgt 73648 Query: 579 cgccgtcacgct 590 ||||||||||| Sbjct: 73647 ggccgtcacgct 73636
>dbj|AK108845.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-A01, full insert sequence Length = 1265 Score = 206 bits (104), Expect = 6e-50 Identities = 261/311 (83%), Gaps = 8/311 (2%) Strand = Plus / Plus Query: 103 gtagccatgggcacccccgtcggccacgtcgcgccgggcgccggcttcata------ggc 156 |||||||||||||||| ||||||||| ||||||||||||||||||||| | ||| Sbjct: 28 gtagccatgggcaccctcgtcggccatgtcgcgccgggcgccggcttcctcctcgtcggc 87 Query: 157 ctgtggcagctgttcaaccacatccggctgttctcgctgcggcccggctcctacgccgcg 216 |||||||| || | |||||||||| |||| ||| ||| |||| | |||||| |||| Sbjct: 88 ctgtggcacctctacaaccacatcaggctcttcctgctcaggccaaccgcctacgtcgcg 147 Query: 217 ccggtctggttccccgcgcgcggcgtccgccacctcgagctcatcctcgtcatcgtcggc 276 || ||||||||||||| || | | |||| ||||||||||| ||||||||||| |||| Sbjct: 148 cccgtctggttccccgtccggcgagcccgctacctcgagctcgccctcgtcatcgccggc 207 Query: 277 ac-gtcgatgtccatcctgatggagctcgtgatcggccccgcgaagcaccagccgttcga 335 | |||| ||||||||| ||||||||||| ||||||| |||| ||||||||||||||| Sbjct: 208 gccgtcgc-gtccatcctcatggagctcgtcgtcggcccggcgaggcaccagccgttcga 266 Query: 336 cgacgacgggaccatcccgtccgaccacctccacaacttcgagcacgcgtccatctcgct 395 || |||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 267 cgccgacggcaccgtgccgtccgaccacctccacaacttcgagcacgcgtccatctccct 326 Query: 396 cgccctgctcg 406 ||| ||||||| Sbjct: 327 cgcgctgctcg 337 Score = 135 bits (68), Expect = 2e-28 Identities = 116/132 (87%) Strand = Plus / Plus Query: 459 cgccgtgtcgcagctggccgccgccgcggcgttcgcgcagcagctgctcatcttccacct 518 ||||||||||||||| | |||||||| ||||||||||||||||||| | | |||||||| Sbjct: 390 cgccgtgtcgcagctcgtcgccgccgtggcgttcgcgcagcagctgatgctgttccacct 449 Query: 519 ccactccgcggaccacatgggcgtggaggggcagttccactggctgctgcaggccgtcat 578 |||||| ||||||||| ||||||||||||||||| |||| ||||||||||| |||| | Sbjct: 450 ccactcggcggaccacgcgggcgtggaggggcagtaccacctgctgctgcagggcgtcgt 509 Query: 579 cgccgtcacgct 590 ||||||||||| Sbjct: 510 ggccgtcacgct 521
>dbj|AK110839.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-B04, full insert sequence Length = 1545 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 484 gcggcgttcgcgcagcagctgctcatcttccacctccactccgcggaccacatgggcgtg 543 |||| |||||||||| |||| ||| |||||||| |||||||| | |||||| ||||| Sbjct: 472 gcggtgttcgcgcaggagctcctcgtcttccacttccactccaccgaccacgccggcgtc 531 Query: 544 gaggggcagttccactggctgctgcagg 571 ||||| |||||||||||||| ||||||| Sbjct: 532 gagggccagttccactggctcctgcagg 559 Score = 40.1 bits (20), Expect = 8.0 Identities = 95/120 (79%) Strand = Plus / Plus Query: 158 tgtggcagctgttcaaccacatccggctgttctcgctgcggcccggctcctacgccgcgc 217 ||||||| |||||||||||| || ||| ||||| | ||| || | | |||||| ||||| Sbjct: 147 tgtggcacctgttcaaccacgtcaagctcttctcccagcgcccggacacctacgtcgcgc 206 Query: 218 cggtctggttccccgcgcgcggcgtccgccacctcgagctcatcctcgtcatcgtcggca 277 ||| |||||||||| || |||| ||| |||| |||||| |||| |||||| ||||| Sbjct: 207 cggcgtggttccccgtgccgggcgcgcgctacctggagctcgccctcatcatcgccggca 266
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 392 cgctcgccctgctcgcgttcgccg 415 |||||||||||||||||||||||| Sbjct: 4599544 cgctcgccctgctcgcgttcgccg 4599521 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 gccgccgccgcggcgttcgc 494 |||||||||||||||||||| Sbjct: 2768320 gccgccgccgcggcgttcgc 2768339
>gb|AC024781.2| Caenorhabditis elegans cosmid Y43H11AL, complete sequence Length = 34333 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 254 agctcatcctcgtcatcgtcgg 275 |||||||||||||||||||||| Sbjct: 29964 agctcatcctcgtcatcgtcgg 29985
>ref|NM_061286.2| Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-85) (pqn-85) mRNA, complete cds Length = 6996 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 254 agctcatcctcgtcatcgtcgg 275 |||||||||||||||||||||| Sbjct: 1739 agctcatcctcgtcatcgtcgg 1718
>ref|NM_191755.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1854 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 472 ctggccgccgccgcggcgttcgcgc 496 ||||||||||||||||||| ||||| Sbjct: 352 ctggccgccgccgcggcgtccgcgc 376
>gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0064H09, complete sequence Length = 146742 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 497 agcagctgctcatcttccacctccactcc 525 |||||||||||||| || ||||||||||| Sbjct: 100146 agcagctgctcatcctcgacctccactcc 100118
>gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete sequence Length = 163712 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 tcctcgtcatcgtcggcacgt 280 ||||||||||||||||||||| Sbjct: 114594 tcctcgtcatcgtcggcacgt 114574
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 acgcagccgatcaccaccagc 40 ||||||||||||||||||||| Sbjct: 18663 acgcagccgatcaccaccagc 18683
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 260 tcctcgtcatcgtcggcacgt 280 ||||||||||||||||||||| Sbjct: 29656783 tcctcgtcatcgtcggcacgt 29656803 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ttccctcctcccctcactcc 62 |||||||||||||||||||| Sbjct: 31774706 ttccctcctcccctcactcc 31774725 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 gccgccgccgcggcgttcgc 494 |||||||||||||||||||| Sbjct: 29223730 gccgccgccgcggcgttcgc 29223749
>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0074L11, complete sequence Length = 180703 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 475 gccgccgccgcggcgttcgcg 495 ||||||||||||||||||||| Sbjct: 124566 gccgccgccgcggcgttcgcg 124546
>ref|XM_780232.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC580159 (LOC580159), mRNA Length = 1902 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 tcatcctcgtcatcgtcggca 277 ||||||||||||||||||||| Sbjct: 1187 tcatcctcgtcatcgtcggca 1167 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 tcatcctcgtcatcgtcggca 277 ||||||||||||||||||||| Sbjct: 1127 tcatcctcgtcatcgtcggca 1107
>emb|BX294155.1| Pirellula sp. strain 1 complete genome; segment 23/24 Length = 306550 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 ccgatcaccaccagcatttcc 46 ||||||||||||||||||||| Sbjct: 230561 ccgatcaccaccagcatttcc 230541
>gb|AY026332.1| Oryza sativa Myb transcription factor JAMyb mRNA, complete cds Length = 1343 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 497 agcagctgctcatcttccacctccactcc 525 |||||||||||||| || ||||||||||| Sbjct: 398 agcagctgctcatcctcgacctccactcc 426
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 497 agcagctgctcatcttccacctccactcc 525 |||||||||||||| || ||||||||||| Sbjct: 23170380 agcagctgctcatcctcgacctccactcc 23170352
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 497 agcagctgctcatcttccacctccactcc 525 |||||||||||||| || ||||||||||| Sbjct: 26795519 agcagctgctcatcctcgacctccactcc 26795491 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 475 gccgccgccgcggcgttcgcg 495 ||||||||||||||||||||| Sbjct: 21772513 gccgccgccgcggcgttcgcg 21772493
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 260 tcctcgtcatcgtcggcacgt 280 ||||||||||||||||||||| Sbjct: 29748205 tcctcgtcatcgtcggcacgt 29748225 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ttccctcctcccctcactcc 62 |||||||||||||||||||| Sbjct: 31865222 ttccctcctcccctcactcc 31865241 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 gccgccgccgcggcgttcgc 494 |||||||||||||||||||| Sbjct: 29315106 gccgccgccgcggcgttcgc 29315125
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 472 ctggccgccgccgcggcgttcgcgc 496 ||||||||||||||||||| ||||| Sbjct: 29774903 ctggccgccgccgcggcgtccgcgc 29774927
>dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0683B11 Length = 155955 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 472 ctggccgccgccgcggcgttcgcgc 496 ||||||||||||||||||| ||||| Sbjct: 18998 ctggccgccgccgcggcgtccgcgc 19022
>dbj|AP003408.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1131B07 Length = 109135 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 472 ctggccgccgccgcggcgttcgcgc 496 ||||||||||||||||||| ||||| Sbjct: 104634 ctggccgccgccgcggcgtccgcgc 104658
>gb|AE005115.1| Halobacterium sp. NRC-1 section 146 of 170 of the complete genome Length = 14635 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 477 cgccgccgcggcgttcgcgca 497 ||||||||||||||||||||| Sbjct: 3817 cgccgccgcggcgttcgcgca 3837
>dbj|AK105543.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-H12, full insert sequence Length = 1391 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 260 tcctcgtcatcgtcggcacgt 280 ||||||||||||||||||||| Sbjct: 123 tcctcgtcatcgtcggcacgt 143
>dbj|AK072403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080H01, full insert sequence Length = 2294 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 497 agcagctgctcatcttccacctccactcc 525 |||||||||||||| || ||||||||||| Sbjct: 617 agcagctgctcatcctcgacctccactcc 645
>dbj|AK069082.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023005A19, full insert sequence Length = 1404 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 497 agcagctgctcatcttccacctccactcc 525 |||||||||||||| || ||||||||||| Sbjct: 416 agcagctgctcatcctcgacctccactcc 444
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 497 agcagctgctcatcttccacctccactcc 525 |||||||||||||| || ||||||||||| Sbjct: 27122751 agcagctgctcatcctcgacctccactcc 27122723 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 475 gccgccgccgcggcgttcgcg 495 ||||||||||||||||||||| Sbjct: 22082712 gccgccgccgcggcgttcgcg 22082692
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 497 agcagctgctcatcttccacctccactcc 525 |||||||||||||| || ||||||||||| Sbjct: 23098571 agcagctgctcatcctcgacctccactcc 23098543
>emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135323 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 497 agcagctgctcatcttccacctccactcc 525 |||||||||||||| || ||||||||||| Sbjct: 8017 agcagctgctcatcctcgacctccactcc 8045
>emb|AL669898.17| Mouse DNA sequence from clone RP23-6C3 on chromosome X, complete sequence Length = 220201 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 catttccctcctcccctcact 60 ||||||||||||||||||||| Sbjct: 174625 catttccctcctcccctcact 174605
>ref|NM_104397.2| Arabidopsis thaliana unknown protein AT1G55240 mRNA, complete cds Length = 1166 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 346 accatcccgtccgaccacctccacaacttcga 377 |||||||| || ||||||||||||||||||| Sbjct: 260 accatcccatcgaaccacctccacaacttcga 291
>ref|NM_127084.2| Arabidopsis thaliana carboxylic ester hydrolase/ catalytic/ hydrolase AT2G15230 mRNA, complete cds Length = 1458 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 attcaatttcaaactccaaa 20 |||||||||||||||||||| Sbjct: 543 attcaatttcaaactccaaa 562
>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0087J09, complete sequence Length = 153351 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 473 tggccgccgccgcggcgttc 492 |||||||||||||||||||| Sbjct: 31989 tggccgccgccgcggcgttc 32008
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 ctgcaggccgtcatcgccgt 584 |||||||||||||||||||| Sbjct: 3019779 ctgcaggccgtcatcgccgt 3019760
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 gacgggaccatcccgtccga 359 |||||||||||||||||||| Sbjct: 1684283 gacgggaccatcccgtccga 1684264
>gb|BT025547.1| Arabidopsis thaliana At2g15230 mRNA, complete cds Length = 1182 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 attcaatttcaaactccaaa 20 |||||||||||||||||||| Sbjct: 458 attcaatttcaaactccaaa 477
>gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genomic sequence, complete sequence Length = 129440 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 gccgccgccgcggcgttcgc 494 |||||||||||||||||||| Sbjct: 55545 gccgccgccgcggcgttcgc 55564
>gb|AE009222.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 248 of 256 of the complete sequence Length = 12589 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 392 cgctcgccctgctcgcgttcgccg 415 |||||||||||||||||| ||||| Sbjct: 9389 cgctcgccctgctcgcgtgcgccg 9412
>gb|AC124459.5| Mus musculus BAC clone RP24-140E5 from chromosome 19, complete sequence Length = 170323 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 gcagttccactggctgctgc 568 |||||||||||||||||||| Sbjct: 132514 gcagttccactggctgctgc 132533
>gb|AE017286.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough plasmid pDV, complete sequence Length = 202301 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 564 gctgcaggccgtcatcgccgtcacgctg 591 ||||| ||||| |||||||||||||||| Sbjct: 89713 gctgctggccgccatcgccgtcacgctg 89686
>gb|BT012146.1| Arabidopsis thaliana At1g55240 mRNA, complete cds Length = 936 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 346 accatcccgtccgaccacctccacaacttcga 377 |||||||| || ||||||||||||||||||| Sbjct: 244 accatcccatcgaaccacctccacaacttcga 275
>gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genomic sequence, complete sequence Length = 139788 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 gccgccgccgcggcgttcgc 494 |||||||||||||||||||| Sbjct: 132270 gccgccgccgcggcgttcgc 132251
>gb|BT011215.1| Arabidopsis thaliana At1g55240 gene, complete cds Length = 1064 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 346 accatcccgtccgaccacctccacaacttcga 377 |||||||| || ||||||||||||||||||| Sbjct: 343 accatcccatcgaaccacctccacaacttcga 374
>gb|AF530477.1| Arabidopsis thaliana putative triacylglycerol/steryl ester hydrolase mRNA, complete cds Length = 1331 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 attcaatttcaaactccaaa 20 |||||||||||||||||||| Sbjct: 485 attcaatttcaaactccaaa 504
>ref|XM_757067.1| Ustilago maydis 521 hypothetical protein (UM06013.1) partial mRNA Length = 6417 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 atcctcgtcatcgtcggcac 278 |||||||||||||||||||| Sbjct: 1278 atcctcgtcatcgtcggcac 1259
>emb|BX248343.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 10/14 Length = 307550 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 ctgcaggccgtcatcgccgt 584 |||||||||||||||||||| Sbjct: 163978 ctgcaggccgtcatcgccgt 163959
>gb|AY223810.1| Rhodococcus erythropolis linear plasmid pBD2, complete sequence Length = 210205 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 tcgcgttcgccgcggtcacc 423 |||||||||||||||||||| Sbjct: 27245 tcgcgttcgccgcggtcacc 27264
>gb|AC102604.13| Mus musculus chromosome 19, clone RP23-385L22, complete sequence Length = 212387 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 gcagttccactggctgctgc 568 |||||||||||||||||||| Sbjct: 6665 gcagttccactggctgctgc 6684
>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence Length = 134496 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ttccctcctcccctcactcc 62 |||||||||||||||||||| Sbjct: 99932 ttccctcctcccctcactcc 99951
>emb|BX063974.1|CNS09LIY Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC46AC09 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 664 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 556 cactggctgctgcaggccgt 575 |||||||||||||||||||| Sbjct: 479 cactggctgctgcaggccgt 498
>emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome; segment 9/13 Length = 346051 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 ctgcaggccgtcatcgccgt 584 |||||||||||||||||||| Sbjct: 251806 ctgcaggccgtcatcgccgt 251787
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 483 cgcggcgttcgcgcagcagc 502 |||||||||||||||||||| Sbjct: 903273 cgcggcgttcgcgcagcagc 903254
>gb|AE012115.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 23 of 460 of the complete genome Length = 10703 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 cgccgcggcgttcgcgcagc 499 |||||||||||||||||||| Sbjct: 4264 cgccgcggcgttcgcgcagc 4245
>gb|AC006298.13| Arabidopsis thaliana chromosome 2 clone F15A23 map mi398, complete sequence Length = 57564 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 attcaatttcaaactccaaa 20 |||||||||||||||||||| Sbjct: 6782 attcaatttcaaactccaaa 6763
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 392 cgctcgccctgctcgcgttcgccg 415 |||||||||||||||||| ||||| Sbjct: 2751414 cgctcgccctgctcgcgtgcgccg 2751437
>gb|AF285783.1| Myxococcus xanthus hsfBA operon, complete sequence; branching enzyme GlgB gene, partial cds; and unknown genes Length = 8785 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 397 gccctgctcgcgttcgccgcggtc 420 |||||||||||||| ||||||||| Sbjct: 7043 gccctgctcgcgttggccgcggtc 7020
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 465 gtcgcagctggccgccgccgcggc 488 ||||| |||||||||||||||||| Sbjct: 3081185 gtcgctgctggccgccgccgcggc 3081162 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 392 cgctcgccctgctcgcgttcgccg 415 |||||||||||||| ||||||||| Sbjct: 342829 cgctcgccctgctcccgttcgccg 342806
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 cgccgcggcgttcgcgcagc 499 |||||||||||||||||||| Sbjct: 247670 cgccgcggcgttcgcgcagc 247651
>gb|AC027034.10|AC027034 Arabidopsis thaliana chromosome 1 BAC F7A10 genomic sequence, complete sequence Length = 101954 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 346 accatcccgtccgaccacctccacaacttcga 377 |||||||| || ||||||||||||||||||| Sbjct: 73163 accatcccatcgaaccacctccacaacttcga 73132
>gb|AE004707.1| Pseudomonas aeruginosa PAO1, section 268 of 529 of the complete genome Length = 10940 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 ggacagggtccgggcgccga 451 |||||||||||||||||||| Sbjct: 8386 ggacagggtccgggcgccga 8367
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 483 cgcggcgttcgcgcagcagctgct 506 ||||||| |||||||||||||||| Sbjct: 2358309 cgcggcgctcgcgcagcagctgct 2358286
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 agccgttcgacgacgacggg 345 |||||||||||||||||||| Sbjct: 6761541 agccgttcgacgacgacggg 6761522 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 458 acgccgtgtcgcagctggcc 477 |||||||||||||||||||| Sbjct: 5171691 acgccgtgtcgcagctggcc 5171672
>dbj|AK120539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129F07, full insert sequence Length = 1970 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 gccgccgccgcggcgttcgc 494 |||||||||||||||||||| Sbjct: 412 gccgccgccgcggcgttcgc 431
>gb|AC007056.4|AC007056 Homo sapiens clone from human chromosome 14q31 region containing gene for neurexin III, partial CDS, complete sequence Length = 182481 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 547 gggcagttccactggctgctgcag 570 ||||| |||||||||||||||||| Sbjct: 148541 gggcatttccactggctgctgcag 148518
>dbj|AK106911.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-A07, full insert sequence Length = 1659 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 473 tggccgccgccgcggcgttc 492 |||||||||||||||||||| Sbjct: 1496 tggccgccgccgcggcgttc 1477
>gb|BT024115.1| Zea mays clone EL01N0513A07 mRNA sequence Length = 1781 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 gccgccgcggcgttcgcgca 497 |||||||||||||||||||| Sbjct: 159 gccgccgcggcgttcgcgca 178
>gb|AF099409.1|AF099409 Zea mays clone ZmMYBIM45 R2R3MYB-domain protein mRNA, partial cds Length = 129 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 497 agcagctgctcatcttccacctccactc 524 |||||||||||||| || |||||||||| Sbjct: 50 agcagctgctcatcctcgacctccactc 77
>gb|AY106414.1| Zea mays PCO109372 mRNA sequence Length = 1863 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 gccgccgcggcgttcgcgca 497 |||||||||||||||||||| Sbjct: 111 gccgccgcggcgttcgcgca 130
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 237 cggcgtccgccacctcgagctcatcctc 264 |||||||||||||||| ||| ||||||| Sbjct: 1842117 cggcgtccgccacctccagcccatcctc 1842090
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 483 cgcggcgttcgcgcagcagc 502 |||||||||||||||||||| Sbjct: 933470 cgcggcgttcgcgcagcagc 933451
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 400 ctgctcgcgttcgccgcggtcaccatcc 427 ||||||||||||||||||| ||| |||| Sbjct: 2703445 ctgctcgcgttcgccgcggacacgatcc 2703472
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 460 gccgtgtcgcagctggccgccgcc 483 ||||||| |||||||||||||||| Sbjct: 3371865 gccgtgttgcagctggccgccgcc 3371842
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 459 cgccgtgtcgcagctggccgccgccgcg 486 ||||||||||| || ||||||||||||| Sbjct: 561893 cgccgtgtcgctgcgggccgccgccgcg 561866
>gb|AF440523.1| Pseudomonas aeruginosa strain C genomic sequence, gene island PAGI-2(C) Length = 158230 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 ggacagggtccgggcgccga 451 |||||||||||||||||||| Sbjct: 151696 ggacagggtccgggcgccga 151715 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,492,077 Number of Sequences: 3902068 Number of extensions: 4492077 Number of successful extensions: 109916 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105166 Number of HSP's gapped (non-prelim): 4740 length of query: 591 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 568 effective length of database: 17,143,297,704 effective search space: 9737393095872 effective search space used: 9737393095872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
