ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart21b06 |
|---|---|
| Clone Library Name | barley_pub |
>TS101_HUMAN (Q99816) Tumor susceptibility gene 101 protein| Length = 390 Score = 73.9 bits (180), Expect = 2e-13 Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Frame = +2 Query: 125 FPSLRPRTGLFTHDDGRAARLLQAAGTIPIVHAGVSYDLPAVVWLPERYPRCPPLVFLSP 304 + L+P + +DG + L+ GTIP+ + G +Y++P +WL + YP PP+ F+ P Sbjct: 32 YKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKP 91 Query: 305 ARGTVVRTDHPLVDRSGLVAAADAPYLRSWAFPSSNLRDLVLSLSRAFGIDPP----PIT 472 ++T VD +G + PYL W P S+L L+ + FG +PP PI+ Sbjct: 92 TSSMTIKTGKH-VDANGKIY---LPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFSRPIS 147 Query: 473 A 475 A Sbjct: 148 A 148
>TS101_RAT (Q6IRE4) Tumor susceptibility gene 101 protein| Length = 391 Score = 71.6 bits (174), Expect = 1e-12 Identities = 36/113 (31%), Positives = 58/113 (51%) Frame = +2 Query: 125 FPSLRPRTGLFTHDDGRAARLLQAAGTIPIVHAGVSYDLPAVVWLPERYPRCPPLVFLSP 304 + L+P + +DG + L+ GTIP+ + G Y++P +WL + YP PP+ F+ P Sbjct: 32 YKDLKPVLDSYVFNDGSSRELVNLTGTIPVRYRGNIYNIPICLWLLDTYPYNPPICFVKP 91 Query: 305 ARGTVVRTDHPLVDRSGLVAAADAPYLRSWAFPSSNLRDLVLSLSRAFGIDPP 463 ++T VD +G + PYL W P S L +L+ + FG +PP Sbjct: 92 TSSMTIKTGKH-VDANGKIY---LPYLHDWKHPRSELLELIQIMIVIFGEEPP 140
>TS101_MOUSE (Q61187) Tumor susceptibility gene 101 protein| Length = 391 Score = 71.6 bits (174), Expect = 1e-12 Identities = 36/113 (31%), Positives = 58/113 (51%) Frame = +2 Query: 125 FPSLRPRTGLFTHDDGRAARLLQAAGTIPIVHAGVSYDLPAVVWLPERYPRCPPLVFLSP 304 + L+P + +DG + L+ GTIP+ + G Y++P +WL + YP PP+ F+ P Sbjct: 32 YKDLKPVLDSYVFNDGSSRELVNLTGTIPVRYRGNIYNIPICLWLLDTYPYNPPICFVKP 91 Query: 305 ARGTVVRTDHPLVDRSGLVAAADAPYLRSWAFPSSNLRDLVLSLSRAFGIDPP 463 ++T VD +G + PYL W P S L +L+ + FG +PP Sbjct: 92 TSSMTIKTGKH-VDANGKIY---LPYLHDWKHPRSELLELIQIMIVIFGEEPP 140
>STP22_YEAST (P25604) Suppressor protein STP22 of temperature-sensitive| alpha-factor receptor and arginine permease (Vacuolar protein sorting-associated protein VPS23) Length = 385 Score = 56.6 bits (135), Expect = 3e-08 Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 6/119 (5%) Frame = +2 Query: 98 DHLATLAEAFPSLRPRTGLFTHDDGRAARLLQAAGTIPIVHAGVS-YDLPAVVWLPERYP 274 D LA L + F SLRPRT +FTH DG LL GTI G S + +P ++W+P YP Sbjct: 34 DSLALL-DNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYP 92 Query: 275 RCPPLVFLSPAR--GTVVRTDHPL---VDRSGLVAAADAPYLRSWAFPSSNLRDLVLSL 436 PP + ++ + + P+ +D +G +A P L W + NL +V L Sbjct: 93 VKPPFISINLENFDMNTISSSLPIQEYIDSNGWIA---LPILHCWDPAAMNLIMVVQEL 148
>RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5035 Score = 38.9 bits (89), Expect = 0.007 Identities = 22/46 (47%), Positives = 23/46 (50%) Frame = -2 Query: 472 GDGGRVDAEGAGEGQDEVAEVGGRERP*AEVRGVGRGDEARAVDEG 335 G GG D EGAGEG E E G E + G G D A AV EG Sbjct: 4394 GPGGEADGEGAGEGAGEAWEGAGDEEVAVQEAGPGGADGAVAVAEG 4439
>HXA9_HUMAN (P31269) Homeobox protein Hox-A9 (Hox-1G)| Length = 272 Score = 34.3 bits (77), Expect = 0.18 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Frame = +2 Query: 332 HPLVDRSGLVAAA--DAPYLRSWAFPSSNLRDLV-LSLSRAFGIDPPPITA 475 HP V VAAA D Y+RSW P+ L SR +GI P P++A Sbjct: 89 HPYVHPQAPVAAAAPDGRYMRSWLEPTPGALSFAGLPSSRPYGIKPEPLSA 139
>HXA9_HETFR (Q9IA26) Homeobox protein Hox-A9| Length = 260 Score = 34.3 bits (77), Expect = 0.18 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = +2 Query: 332 HPLVDRSGLVAAADAPYLRSWAFP-SSNLRDLVLSLSRAFGIDPPPITA 475 HP + ++ + AA D Y+RSW P L L SR +GI P P+ + Sbjct: 80 HPYMHQAPIAAAPDGRYMRSWLDPMPGTLSFPGLPSSRHYGIKPEPVAS 128
>HXA9_MOUSE (P09631) Homeobox protein Hox-A9 (Hox-1.7)| Length = 271 Score = 34.3 bits (77), Expect = 0.18 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Frame = +2 Query: 332 HPLVDRSGLVAAA--DAPYLRSWAFPSSNLRDLV-LSLSRAFGIDPPPITA 475 HP V VAAA D Y+RSW P+ L SR +GI P P++A Sbjct: 88 HPYVHPQAPVAAAAPDGRYMRSWLEPTPGALSFAGLPSSRPYGIKPEPLSA 138
>MARCS_HUMAN (P29966) Myristoylated alanine-rich C-kinase substrate (MARCKS)| (Protein kinase C substrate, 80 kDa protein, light chain) (PKCSL) (80K-L protein) Length = 331 Score = 32.0 bits (71), Expect = 0.88 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 6/57 (10%) Frame = -2 Query: 472 GDGGRVDAEGAGEGQDEVAEVGGRERP*AEV------RGVGRGDEARAVDEGVVGSD 320 G+GG +A A G+DE A GG AE + G+EA A +EG G D Sbjct: 178 GEGGEAEAPAAEGGKDEAA--GGAAAAAAEAGAASGEQAAAPGEEAAAGEEGAAGGD 232
>ERD1_ARATH (P42762) ERD1 protein, chloroplast precursor| Length = 945 Score = 30.8 bits (68), Expect = 2.0 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +2 Query: 53 DAALPYAE--DVMWLVPDHLATLAEAFPSLRPRTGLFTHDDGRAARLLQAAG 202 +AA+ Y+ D ++ P+H+A GLFT DDG A R+L+ G Sbjct: 177 EAAVEYSRTMDCQYIAPEHIAV------------GLFTVDDGSAGRVLKRLG 216
>UBC13_SCHPO (O13685) Ubiquitin-conjugating enzyme E2 13 (EC 6.3.2.19)| (Ubiquitin-protein ligase 13) (Ubiquitin carrier protein 13) Length = 148 Score = 30.4 bits (67), Expect = 2.6 Identities = 19/71 (26%), Positives = 34/71 (47%) Frame = +2 Query: 251 VWLPERYPRCPPLVFLSPARGTVVRTDHPLVDRSGLVAAADAPYLRSWAFPSSNLRDLVL 430 ++LP+ YP PP V + + HP VD+ G + + + W+ P+ +R ++L Sbjct: 55 LFLPDEYPMMPPNVRF------LTKIYHPNVDKLGRICLSTLK--KDWS-PALQIRTVLL 105 Query: 431 SLSRAFGIDPP 463 S+ G P Sbjct: 106 SIQALMGAPNP 116
>GLNE_STRAW (Q81ZW1) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 1000 Score = 30.0 bits (66), Expect = 3.3 Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 6/56 (10%) Frame = -2 Query: 472 GDGGRVDAEGAGEGQDE------VAEVGGRERP*AEVRGVGRGDEARAVDEGVVGS 323 GDGGR E G Q E V GG E+ VRGV R + R +V S Sbjct: 611 GDGGRGGLEPRGRAQLEQEVLAAVGRAGGSEQAVTTVRGVRRRELFRTAARDIVSS 666
>UBE2T_MOUSE (Q9CQ37) Ubiquitin-conjugating enzyme E2 T (EC 6.3.2.19)| (Ubiquitin-protein ligase T) (Ubiquitin carrier protein T) Length = 204 Score = 29.6 bits (65), Expect = 4.4 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Frame = +2 Query: 251 VWLPERYPRCPPLV-FLSPARGTVVRTDHPLVDRSGLVA--AADAPYLRSWAFPSSNLRD 421 V +PERYP PP V FL+P HP +D SG + P +W PS N+ Sbjct: 55 VIIPERYPFEPPQVRFLTPIY-------HPNIDSSGRICLDILKLPPKGAWR-PSLNIAT 106 Query: 422 LVLSLSRAFGIDPP--PITAEV 481 ++ S+ P P+ A++ Sbjct: 107 VLTSIQLLMAEPNPDDPLMADI 128
>VP2_AHSV3 (Q89508) Outer capsid protein VP2| Length = 1057 Score = 29.6 bits (65), Expect = 4.4 Identities = 18/68 (26%), Positives = 33/68 (48%) Frame = +2 Query: 236 DLPAVVWLPERYPRCPPLVFLSPARGTVVRTDHPLVDRSGLVAAADAPYLRSWAFPSSNL 415 D P ++ + Y RCP +++ R V + ++ + GLV + +LR + N Sbjct: 593 DDPEKYFVDDLYNRCPESIYV---RNGVDPNNKIMIKKRGLVGESQRIFLRDLSHIGMNF 649 Query: 416 RDLVLSLS 439 + L+L LS Sbjct: 650 KKLLLRLS 657
>CRTI_SYNY4 (P21134) Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene| desaturase) Length = 532 Score = 29.3 bits (64), Expect = 5.7 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = -2 Query: 478 LGGDGGRVDAEGAGEGQDEVAEVGGRERP*AEVRGVGRGDEARAVDEGVVGSD 320 +GGDG ++ +G G G+D G A + G R ++ + +GV G D Sbjct: 173 IGGDGFGIERQGLGLGEDR-----GAVEAAAAIAGPRRDEDVQVRGKGVFGRD 220
>PPE30_MYCTU (P0A692) Hypothetical PPE-family protein PPE30| Length = 463 Score = 28.9 bits (63), Expect = 7.5 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Frame = +2 Query: 281 PPLVFLSPARGTVVRTDHPLVDRSGLVAAADAPYLRSWAFPSSNLRDLVLSLSRAFGID- 457 PP+V + A V+ + +G +AAA+A Y WA ++ + S S A + Sbjct: 106 PPVVAANRAELAVLAATNIFGQNTGAIAAAEARYAEMWAQDAAAMYGYAGSSSVATQVTP 165 Query: 458 ---PPPIT 472 PPP T Sbjct: 166 FAAPPPTT 173
>PPE30_MYCBO (P0A693) Hypothetical PPE-family protein PPE30| Length = 463 Score = 28.9 bits (63), Expect = 7.5 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Frame = +2 Query: 281 PPLVFLSPARGTVVRTDHPLVDRSGLVAAADAPYLRSWAFPSSNLRDLVLSLSRAFGID- 457 PP+V + A V+ + +G +AAA+A Y WA ++ + S S A + Sbjct: 106 PPVVAANRAELAVLAATNIFGQNTGAIAAAEARYAEMWAQDAAAMYGYAGSSSVATQVTP 165 Query: 458 ---PPPIT 472 PPP T Sbjct: 166 FAAPPPTT 173
>DCUP_DROME (Q9V595) Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D) (UPD)| Length = 356 Score = 28.9 bits (63), Expect = 7.5 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Frame = +2 Query: 191 QAAGTIPIVHAGVSYDLPAVVWLPERYPRCPP---LVFLSPARGTVVRTDHPLVDRSGLV 361 QA G +HAGV LP + +PE R P L LS + H L R L+ Sbjct: 88 QALGLTVEMHAGVGPVLPQPIVVPEDLKRLTPDGALSRLSYVGDAITMMRHKLEGRVPLI 147 Query: 362 AAADAPY 382 AP+ Sbjct: 148 GFTGAPW 154
>Y4XL_RHISN (P55704) Hypothetical protein y4xL| Length = 338 Score = 28.9 bits (63), Expect = 7.5 Identities = 44/152 (28%), Positives = 54/152 (35%), Gaps = 7/152 (4%) Frame = +2 Query: 44 QFLDAALPYAEDVMWLVPDHLATL------AEAFPSLRPRTGLFTHDDGRAARLLQAAGT 205 Q+LD+A PY W + T +E P R G HD + L+AAG Sbjct: 63 QYLDSAYPYPSPCEWQHDLYTRTRERSPHPSEQRPHARVLQGAPEHDQDQH---LEAAGP 119 Query: 206 IP-IVHAGVSYDLPAVVWLPERYPRCPPLVFLSPARGTVVRTDHPLVDRSGLVAAADAPY 382 G S P+ L P PL P T + T HP + Y Sbjct: 120 REGSWQVGPSRSGPSQAGLS---PSATPLNPSPPPHATDLETKHPY-----------SQY 165 Query: 383 LRSWAFPSSNLRDLVLSLSRAFGIDPPPITAE 478 L WA PS L D L P P+TAE Sbjct: 166 L-DWANPS--LLDWQQDLHTRATASPAPLTAE 194
>UBE2T_HUMAN (Q9NPD8) Ubiquitin-conjugating enzyme E2 T (EC 6.3.2.19)| (Ubiquitin-protein ligase T) (Ubiquitin carrier protein T) Length = 197 Score = 28.5 bits (62), Expect = 9.7 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Frame = +2 Query: 251 VWLPERYPRCPPLV-FLSPARGTVVRTDHPLVDRSGLVA--AADAPYLRSWAFPSSNLRD 421 V +PERYP PP + FL+P HP +D +G + P +W PS N+ Sbjct: 55 VIIPERYPFEPPQIRFLTPIY-------HPNIDSAGRICLDVLKLPPKGAWR-PSLNIAT 106 Query: 422 LVLSLSRAFGIDPP--PITAEV 481 ++ S+ P P+ A++ Sbjct: 107 VLTSIQLLMSEPNPDDPLMADI 128 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,480,861 Number of Sequences: 219361 Number of extensions: 761342 Number of successful extensions: 2569 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2457 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2559 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
