ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart21a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463421.1| Oryza sativa (japonica cultivar-group), predic... 117 4e-23
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
3dbj|AP003373.3| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
4dbj|AK071819.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 4e-23
5ref|XM_468692.1| Oryza sativa (japonica cultivar-group), mRNA 72 2e-09
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 72 2e-09
7gb|AC120538.4| Oryza sativa chromosome 3 BAC OSJNBb0059G13 genom... 72 2e-09
8gb|AY328909.1| Oryza sativa (japonica cultivar-group) BRITTLE CU... 72 2e-09
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
10ref|XM_362983.1| Magnaporthe grisea 70-15 hypothetical protein (... 44 0.51
11gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 44 0.51
12emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 44 0.51
13gb|CP000249.1| Frankia sp. CcI3, complete genome 44 0.51
14gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 44 0.51
15gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 44 0.51
16gb|AC068546.6| Homo sapiens BAC clone RP11-406M18 from 2, comple... 44 0.51
17gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 44 0.51
18gb|AC102363.19| Mus musculus chromosome 1, clone RP23-76B18, com... 42 2.0
19ref|NM_190965.1| Oryza sativa (japonica cultivar-group), predic... 40 8.0
20gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence 40 8.0
21gb|AC087327.7| Trypanosoma brucei chromosome 4 clone RPCI93-3I12... 40 8.0
22gb|AC122893.6| Mus musculus BAC clone RP23-67C3 from chromosome ... 40 8.0
23ref|XM_821309.1| Trypanosoma brucei TREU927 clone RPCI93-3I12 hy... 40 8.0
24gb|AC126242.3| Mus musculus BAC clone RP24-249E21 from chromosom... 40 8.0
25gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 8.0
26gb|AC104323.27| Mus musculus strain C57BL/6J chromosome 17 clone... 40 8.0
27emb|AL445650.9| Human DNA sequence from clone RP11-152K20 on chr... 40 8.0
28emb|AL133347.28| Human DNA sequence from clone RP1-274L14 on chr... 40 8.0
29emb|BX071222.1|CNS09R4A Single read from an extremity of a full-... 40 8.0
30emb|BX065330.1|CNS09MKM Single read from an extremity of a full-... 40 8.0
31emb|BX054380.1|CNS09E4G Single read from an extremity of a full-... 40 8.0
32emb|BX035752.1|CNS08ZR0 Single read from an extremity of a full-... 40 8.0
33emb|BX030280.1|CNS08VJ0 Single read from an extremity of a full-... 40 8.0
34emb|BX030279.1|CNS08VIZ Single read from an extremity of a full-... 40 8.0
35emb|BX024236.1|CNS08QV4 Single read from an extremity of a full-... 40 8.0
36emb|BX019558.1|CNS08N96 Single read from an extremity of a full-... 40 8.0
37emb|BX021289.1|CNS08OL9 Single read from an extremity of a full-... 40 8.0
38emb|BX011358.1|CNS08GXE Single read from an extremity of a full-... 40 8.0
39emb|BX011033.1|CNS08GOD Single read from an extremity of a full-... 40 8.0
40emb|AJ242840.1|NGO242840 Neisseria gonorrhoeae DNA for opcA regi... 40 8.0
41emb|AJ242839.1|NGO242839 Neisseria gonorrhoeae DNA for opcA regi... 40 8.0
42emb|AL603744.3| Zebrafish DNA sequence from clone BUSM1-79M10 Co... 40 8.0
43gb|AC123568.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 8.0
44tpg|BK005012.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 40 8.0
45gb|AC097485.2| Homo sapiens BAC clone RP11-163K17 from 4, comple... 40 8.0
46gb|AC083826.7| Homo sapiens BAC clone RP11-289C17 from 4, comple... 40 8.0
47gb|AC159137.8| Mus musculus 10 BAC RP23-9N9 (Roswell Park Cancer... 40 8.0
48gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.0
49dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
50dbj|AP002480.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
51dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
52dbj|AP002839.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
53dbj|AK121250.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.0
54ref|XM_318826.2| Anopheles gambiae str. PEST ENSANGP00000010223 ... 40 8.0
55dbj|AK100415.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.0
56gb|AY530951.1| Zea mays putative growth-regulating factor 1 (Z21... 40 8.0
57gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome 40 8.0
58dbj|AP000805.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.0
59emb|CT025573.9| Mouse DNA sequence from clone RP24-274P18 on chr... 40 8.0
60emb|CR759894.19| Zebrafish DNA sequence from clone DKEYP-84G6 in... 40 8.0
61gb|AC092856.26| Mus musculus strain C57BL/6J chromosome 10 clone... 40 8.0 
>ref|XM_463421.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1455

 Score =  117 bits (59), Expect = 4e-23
 Identities = 177/216 (81%), Gaps = 9/216 (4%)
 Strand = Plus / Plus

                                                                       
Query: 121 caccacgatgccacggaagctggtggtcctgtacccgtcgccgggcatgggccacctggt 180
           |||||||| | | ||||||| ||| || || |||||||||||||||||||||||||||||
Sbjct: 21  caccacgagggcccggaagccggtcgtgctctacccgtcgccgggcatgggccacctggt 80

                                                                       
Query: 181 ctcgatgatcgaactgggtaagatcatcgctgcccgtggcctcgccgtcaccatcgtcgt 240
           ||| |||||||| || || ||| |  |||| ||||| ||||||||||||||| |||||||
Sbjct: 81  ctccatgatcgagctcggcaaggtgttcgccgcccgcggcctcgccgtcaccgtcgtcgt 140

                                                                       
Query: 241 catcgacctaccgca---caacaccggagcaagcgcaacagggcccttcctcgccggggt 297
           | |||||| |||| |   ||||||||      |||| || ||||| ||||||||||| ||
Sbjct: 141 cgtcgacccaccgtacggcaacaccg------gcgcgacggggcctttcctcgccggcgt 194

                                               
Query: 298 ctccgcggccaaccccaccatctccttccaccgtct 333
           | |||||||||||||  ||||  | |||||||||||
Sbjct: 195 caccgcggccaacccggccatgacgttccaccgtct 230



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                       
Query: 507 tccccgtctactttttcttcacctccggcgctgaggtcctagctttgtgtttgcatctcc 566
           |||||| |||| | |||| ||| |||||||| ||| |||| ||||| |  ||| | ||||
Sbjct: 404 tccccgcctacatgttctacacttccggcgccgagatcctggctttcttcttgtacctcc 463

                               
Query: 567 cggtcctgcacgctcagacc 586
           ||||||||||||||||||||
Sbjct: 464 cggtcctgcacgctcagacc 483
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  117 bits (59), Expect = 4e-23
 Identities = 177/216 (81%), Gaps = 9/216 (4%)
 Strand = Plus / Minus

                                                                            
Query: 121      caccacgatgccacggaagctggtggtcctgtacccgtcgccgggcatgggccacctggt 180
                |||||||| | | ||||||| ||| || || |||||||||||||||||||||||||||||
Sbjct: 28842896 caccacgagggcccggaagccggtcgtgctctacccgtcgccgggcatgggccacctggt 28842837

                                                                            
Query: 181      ctcgatgatcgaactgggtaagatcatcgctgcccgtggcctcgccgtcaccatcgtcgt 240
                ||| |||||||| || || ||| |  |||| ||||| ||||||||||||||| |||||||
Sbjct: 28842836 ctccatgatcgagctcggcaaggtgttcgccgcccgcggcctcgccgtcaccgtcgtcgt 28842777

                                                                            
Query: 241      catcgacctaccgca---caacaccggagcaagcgcaacagggcccttcctcgccggggt 297
                | |||||| |||| |   ||||||||      |||| || ||||| ||||||||||| ||
Sbjct: 28842776 cgtcgacccaccgtacggcaacaccg------gcgcgacggggcctttcctcgccggcgt 28842723

                                                    
Query: 298      ctccgcggccaaccccaccatctccttccaccgtct 333
                | |||||||||||||  ||||  | |||||||||||
Sbjct: 28842722 caccgcggccaacccggccatgacgttccaccgtct 28842687



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                            
Query: 507      tccccgtctactttttcttcacctccggcgctgaggtcctagctttgtgtttgcatctcc 566
                |||||| |||| | |||| ||| |||||||| ||| |||| ||||| |  ||| | ||||
Sbjct: 28842513 tccccgcctacatgttctacacttccggcgccgagatcctggctttcttcttgtacctcc 28842454

                                    
Query: 567      cggtcctgcacgctcagacc 586
                ||||||||||||||||||||
Sbjct: 28842453 cggtcctgcacgctcagacc 28842434



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 222      tcgccgtcaccatcgtcgtcatcg 245
                |||||||||||| |||||||||||
Sbjct: 34077203 tcgccgtcaccaccgtcgtcatcg 34077180



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 430      cgccgccacctcccctgccg 449
                ||||||||||||||||||||
Sbjct: 25071020 cgccgccacctcccctgccg 25071039



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 429      tcgccgccacctcccctgcc 448
                ||||||||||||||||||||
Sbjct: 10474655 tcgccgccacctcccctgcc 10474636
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>dbj|AP003373.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1116_H09
          Length = 110086

 Score =  117 bits (59), Expect = 4e-23
 Identities = 177/216 (81%), Gaps = 9/216 (4%)
 Strand = Plus / Minus

                                                                         
Query: 121   caccacgatgccacggaagctggtggtcctgtacccgtcgccgggcatgggccacctggt 180
             |||||||| | | ||||||| ||| || || |||||||||||||||||||||||||||||
Sbjct: 60939 caccacgagggcccggaagccggtcgtgctctacccgtcgccgggcatgggccacctggt 60880

                                                                         
Query: 181   ctcgatgatcgaactgggtaagatcatcgctgcccgtggcctcgccgtcaccatcgtcgt 240
             ||| |||||||| || || ||| |  |||| ||||| ||||||||||||||| |||||||
Sbjct: 60879 ctccatgatcgagctcggcaaggtgttcgccgcccgcggcctcgccgtcaccgtcgtcgt 60820

                                                                         
Query: 241   catcgacctaccgca---caacaccggagcaagcgcaacagggcccttcctcgccggggt 297
             | |||||| |||| |   ||||||||      |||| || ||||| ||||||||||| ||
Sbjct: 60819 cgtcgacccaccgtacggcaacaccg------gcgcgacggggcctttcctcgccggcgt 60766

                                                 
Query: 298   ctccgcggccaaccccaccatctccttccaccgtct 333
             | |||||||||||||  ||||  | |||||||||||
Sbjct: 60765 caccgcggccaacccggccatgacgttccaccgtct 60730



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                         
Query: 507   tccccgtctactttttcttcacctccggcgctgaggtcctagctttgtgtttgcatctcc 566
             |||||| |||| | |||| ||| |||||||| ||| |||| ||||| |  ||| | ||||
Sbjct: 60556 tccccgcctacatgttctacacttccggcgccgagatcctggctttcttcttgtacctcc 60497

                                 
Query: 567   cggtcctgcacgctcagacc 586
             ||||||||||||||||||||
Sbjct: 60496 cggtcctgcacgctcagacc 60477
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>dbj|AK071819.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114N14, full
           insert sequence
          Length = 1727

 Score =  117 bits (59), Expect = 4e-23
 Identities = 177/216 (81%), Gaps = 9/216 (4%)
 Strand = Plus / Plus

                                                                       
Query: 121 caccacgatgccacggaagctggtggtcctgtacccgtcgccgggcatgggccacctggt 180
           |||||||| | | ||||||| ||| || || |||||||||||||||||||||||||||||
Sbjct: 82  caccacgagggcccggaagccggtcgtgctctacccgtcgccgggcatgggccacctggt 141

                                                                       
Query: 181 ctcgatgatcgaactgggtaagatcatcgctgcccgtggcctcgccgtcaccatcgtcgt 240
           ||| |||||||| || || ||| |  |||| ||||| ||||||||||||||| |||||||
Sbjct: 142 ctccatgatcgagctcggcaaggtgttcgccgcccgcggcctcgccgtcaccgtcgtcgt 201

                                                                       
Query: 241 catcgacctaccgca---caacaccggagcaagcgcaacagggcccttcctcgccggggt 297
           | |||||| |||| |   ||||||||      |||| || ||||| ||||||||||| ||
Sbjct: 202 cgtcgacccaccgtacggcaacaccg------gcgcgacggggcctttcctcgccggcgt 255

                                               
Query: 298 ctccgcggccaaccccaccatctccttccaccgtct 333
           | |||||||||||||  ||||  | |||||||||||
Sbjct: 256 caccgcggccaacccggccatgacgttccaccgtct 291



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                       
Query: 507 tccccgtctactttttcttcacctccggcgctgaggtcctagctttgtgtttgcatctcc 566
           |||||| |||| | |||| ||| |||||||| ||| |||| ||||| |  ||| | ||||
Sbjct: 465 tccccgcctacatgttctacacttccggcgccgagatcctggctttcttcttgtacctcc 524

                               
Query: 567 cggtcctgcacgctcagacc 586
           ||||||||||||||||||||
Sbjct: 525 cggtcctgcacgctcagacc 544
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>ref|XM_468692.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 459

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                       
Query: 165 gcatgggccacctggtctcgatgatcgaactgggtaagatcatcgctgcccgtggcctcg 224
           ||||||||||||||||||| ||||||||  | || ||| |  |||| ||||| |||||||
Sbjct: 107 gcatgggccacctggtctccatgatcgagttcggcaaggtgttcgccgcccgcggcctcg 166

                                   
Query: 225 ccgtcaccatcgtcgtcatcgacc 248
           |||||||| |||||||| ||||||
Sbjct: 167 ccgtcaccgtcgtcgtcgtcgacc 190
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                            
Query: 165      gcatgggccacctggtctcgatgatcgaactgggtaagatcatcgctgcccgtggcctcg 224
                ||||||||||||||||||| ||||||||  | || ||| |  |||| ||||| |||||||
Sbjct: 17071264 gcatgggccacctggtctccatgatcgagttcggcaaggtgttcgccgcccgcggcctcg 17071205

                                        
Query: 225      ccgtcaccatcgtcgtcatcgacc 248
                |||||||| |||||||| ||||||
Sbjct: 17071204 ccgtcaccgtcgtcgtcgtcgacc 17071181



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 222     tcgccgtcaccatcgtcgtc 241
               ||||||||||||||||||||
Sbjct: 5405434 tcgccgtcaccatcgtcgtc 5405453
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>gb|AC120538.4| Oryza sativa chromosome 3 BAC OSJNBb0059G13 genomic sequence, complete
              sequence
          Length = 157662

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                          
Query: 165    gcatgggccacctggtctcgatgatcgaactgggtaagatcatcgctgcccgtggcctcg 224
              ||||||||||||||||||| ||||||||  | || ||| |  |||| ||||| |||||||
Sbjct: 102010 gcatgggccacctggtctccatgatcgagttcggcaaggtgttcgccgcccgcggcctcg 101951

                                      
Query: 225    ccgtcaccatcgtcgtcatcgacc 248
              |||||||| |||||||| ||||||
Sbjct: 101950 ccgtcaccgtcgtcgtcgtcgacc 101927
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>gb|AY328909.1| Oryza sativa (japonica cultivar-group) BRITTLE CULM1 (BC1) gene,
           complete cds
          Length = 4498

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                       
Query: 165 gcatgggccacctggtctcgatgatcgaactgggtaagatcatcgctgcccgtggcctcg 224
           ||||||||||||||||||| ||||||||  | || ||| |  |||| ||||| |||||||
Sbjct: 835 gcatgggccacctggtctccatgatcgagttcggcaaggtgttcgccgcccgcggcctcg 776

                                   
Query: 225 ccgtcaccatcgtcgtcatcgacc 248
           |||||||| |||||||| ||||||
Sbjct: 775 ccgtcaccgtcgtcgtcgtcgacc 752
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                            
Query: 165      gcatgggccacctggtctcgatgatcgaactgggtaagatcatcgctgcccgtggcctcg 224
                ||||||||||||||||||| ||||||||  | || ||| |  |||| ||||| |||||||
Sbjct: 17064833 gcatgggccacctggtctccatgatcgagttcggcaaggtgttcgccgcccgcggcctcg 17064774

                                        
Query: 225      ccgtcaccatcgtcgtcatcgacc 248
                |||||||| |||||||| ||||||
Sbjct: 17064773 ccgtcaccgtcgtcgtcgtcgacc 17064750



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 222     tcgccgtcaccatcgtcgtc 241
               ||||||||||||||||||||
Sbjct: 5404649 tcgccgtcaccatcgtcgtc 5404668
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>ref|XM_362983.1| Magnaporthe grisea 70-15 hypothetical protein (MG08454.4) partial
           cds
          Length = 708

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 155 ccgtcgccgggcatgggccacc 176
           ||||||||||||||||||||||
Sbjct: 352 ccgtcgccgggcatgggccacc 373
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 162     cgggcatgggccacctggtctcgatg 187
               |||||||||||||||||||| |||||
Sbjct: 2303729 cgggcatgggccacctggtcgcgatg 2303754
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 162    cgggcatgggccacctggtctcgatg 187
              |||||||||||||||||||| |||||
Sbjct: 465191 cgggcatgggccacctggtcgcgatg 465216
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 218     ggcctcgccgtcaccatcgtcg 239
               ||||||||||||||||||||||
Sbjct: 3796289 ggcctcgccgtcaccatcgtcg 3796268
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 220     cctcgccgtcaccatcgtcgtcatcg 245
               ||||| ||||||||||||||||||||
Sbjct: 4446614 cctcggcgtcaccatcgtcgtcatcg 4446589
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 162     cgggcatgggccacctggtctcgatg 187
               |||||||||||||||||||| |||||
Sbjct: 1523403 cgggcatgggccacctggtcgcgatg 1523378
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>gb|AC068546.6| Homo sapiens BAC clone RP11-406M18 from 2, complete sequence
          Length = 89493

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 22   cactccaaagcagacaccacca 43
            ||||||||||||||||||||||
Sbjct: 8670 cactccaaagcagacaccacca 8691
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 162     cgggcatgggccacctggtctcgatg 187
               |||||||||||||||||||| |||||
Sbjct: 2518593 cgggcatgggccacctggtcgcgatg 2518568
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>gb|AC102363.19| Mus musculus chromosome 1, clone RP23-76B18, complete sequence
          Length = 210317

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 406   catccctcacctgcgtgattt 426
             |||||||||||||||||||||
Sbjct: 84958 catccctcacctgcgtgattt 84938
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>ref|NM_190965.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 504

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 222 tcgccgtcaccatcgtcgtcatcg 245
           |||||||||||| |||||||||||
Sbjct: 292 tcgccgtcaccaccgtcgtcatcg 269
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>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence
          Length = 1590432

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 225     ccgtcaccatcgtcgtcatc 244
               ||||||||||||||||||||
Sbjct: 1303764 ccgtcaccatcgtcgtcatc 1303783
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>gb|AC087327.7| Trypanosoma brucei chromosome 4 clone RPCI93-3I12, complete sequence
          Length = 158030

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   ccgtcaccatcgtcgtcatc 244
             ||||||||||||||||||||
Sbjct: 20251 ccgtcaccatcgtcgtcatc 20232
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>gb|AC122893.6| Mus musculus BAC clone RP23-67C3 from chromosome 17, complete sequence
          Length = 206456

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    ccgtcaccatcgtcgtcatc 244
              ||||||||||||||||||||
Sbjct: 198896 ccgtcaccatcgtcgtcatc 198877
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>ref|XM_821309.1| Trypanosoma brucei TREU927 clone RPCI93-3I12 hypothetical protein
            (Tb927.4.4740) partial mRNA
          Length = 1179

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  ccgtcaccatcgtcgtcatc 244
            ||||||||||||||||||||
Sbjct: 1130 ccgtcaccatcgtcgtcatc 1111
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>gb|AC126242.3| Mus musculus BAC clone RP24-249E21 from chromosome 10, complete sequence
          Length = 177581

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     actccaaagcagacaccacc 42
              ||||||||||||||||||||
Sbjct: 176571 actccaaagcagacaccacc 176590
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>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0009J13, from chromosome 3, complete sequence
          Length = 147205

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    tcgccgtcaccatcgtcgtc 241
              ||||||||||||||||||||
Sbjct: 111602 tcgccgtcaccatcgtcgtc 111621
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>gb|AC104323.27| Mus musculus strain C57BL/6J chromosome 17 clone rp23-114o8 map 17,
              complete sequence
          Length = 202430

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    ccgtcaccatcgtcgtcatc 244
              ||||||||||||||||||||
Sbjct: 131072 ccgtcaccatcgtcgtcatc 131053
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>emb|AL445650.9| Human DNA sequence from clone RP11-152K20 on chromosome 1 Contains the
             5' end of the USH2A gene for Usher syndrome 2A (autosomal
             recessive, mild) and the 3' end of the ESRRG gene for
             estrogen-related receptor gamma, complete sequence
          Length = 153705

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 5     acttgtgctacactcgacactcca 28
             ||||||||||||||| ||||||||
Sbjct: 52896 acttgtgctacactccacactcca 52919
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>emb|AL133347.28| Human DNA sequence from clone RP1-274L14 on chromosome 6q25.2-26
             Contains part of a novel gene, a signal recognition
             particle 72kD (SRP72) pseudogene and three CpG islands,
             complete sequence
          Length = 100732

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 430   cgccgccacctcccctgccg 449
             ||||||||||||||||||||
Sbjct: 63731 cgccgccacctcccctgccg 63712
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>emb|BX071222.1|CNS09R4A Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC8CF09 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 913

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 246 acctaccgcacaacaccgga 265
           ||||||||||||||||||||
Sbjct: 216 acctaccgcacaacaccgga 235
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>emb|BX065330.1|CNS09MKM Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC49AG05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 340

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 246 acctaccgcacaacaccgga 265
           ||||||||||||||||||||
Sbjct: 171 acctaccgcacaacaccgga 190
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>emb|BX054380.1|CNS09E4G Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC32CB01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 814

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 246 acctaccgcacaacaccgga 265
           ||||||||||||||||||||
Sbjct: 132 acctaccgcacaacaccgga 151
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>emb|BX035752.1|CNS08ZR0 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA7BA04 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 471

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 246 acctaccgcacaacaccgga 265
           ||||||||||||||||||||
Sbjct: 194 acctaccgcacaacaccgga 213
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>emb|BX030280.1|CNS08VJ0 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA45AH05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 959

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 246 acctaccgcacaacaccgga 265
           ||||||||||||||||||||
Sbjct: 882 acctaccgcacaacaccgga 863
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>emb|BX030279.1|CNS08VIZ Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA45AH05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 1030

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 246 acctaccgcacaacaccgga 265
           ||||||||||||||||||||
Sbjct: 217 acctaccgcacaacaccgga 236
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>emb|BX024236.1|CNS08QV4 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA36DH06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 542

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 246 acctaccgcacaacaccgga 265
           ||||||||||||||||||||
Sbjct: 161 acctaccgcacaacaccgga 180
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>emb|BX019558.1|CNS08N96 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA29DE01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 953

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 246 acctaccgcacaacaccgga 265
           ||||||||||||||||||||
Sbjct: 171 acctaccgcacaacaccgga 190
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>emb|BX021289.1|CNS08OL9 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA31CC06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 831

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 246 acctaccgcacaacaccgga 265
           ||||||||||||||||||||
Sbjct: 198 acctaccgcacaacaccgga 217
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>emb|BX011358.1|CNS08GXE Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA18AF09 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 529

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 246 acctaccgcacaacaccgga 265
           ||||||||||||||||||||
Sbjct: 161 acctaccgcacaacaccgga 180
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>emb|BX011033.1|CNS08GOD Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA17CE11 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 740

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 246 acctaccgcacaacaccgga 265
           ||||||||||||||||||||
Sbjct: 239 acctaccgcacaacaccgga 258
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>emb|AJ242840.1|NGO242840 Neisseria gonorrhoeae DNA for opcA region, strain MS11
          Length = 11825

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 426  tcctcgccgccacctcccctgccg 449
            ||||||||||||||| ||||||||
Sbjct: 8195 tcctcgccgccaccttccctgccg 8218
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>emb|AJ242839.1|NGO242839 Neisseria gonorrhoeae DNA for opcA region, strain FA1090
          Length = 11730

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 426  tcctcgccgccacctcccctgccg 449
            ||||||||||||||| ||||||||
Sbjct: 8123 tcctcgccgccaccttccctgccg 8146
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>emb|AL603744.3| Zebrafish DNA sequence from clone BUSM1-79M10 Contains two novel genes
             and two transposase/reverse transcriptase pseudogenes,
             complete sequence
          Length = 72590

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   atcgacctaccgcacaacac 261
             ||||||||||||||||||||
Sbjct: 43115 atcgacctaccgcacaacac 43096
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>gb|AC123568.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OJ1345H02, from chromosome 3, complete sequence
          Length = 145290

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 222  tcgccgtcaccatcgtcgtc 241
            ||||||||||||||||||||
Sbjct: 2028 tcgccgtcaccatcgtcgtc 2047
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>tpg|BK005012.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY
            transcription factor 9 (WRKY9) gene, complete cds
          Length = 8241

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 429  tcgccgccacctcccctgcc 448
            ||||||||||||||||||||
Sbjct: 6020 tcgccgccacctcccctgcc 6001
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>gb|AC097485.2| Homo sapiens BAC clone RP11-163K17 from 4, complete sequence
          Length = 82692

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 35  acaccaccaccacagcgtcc 54
           ||||||||||||||||||||
Sbjct: 871 acaccaccaccacagcgtcc 852
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>gb|AC083826.7| Homo sapiens BAC clone RP11-289C17 from 4, complete sequence
          Length = 129240

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     acaccaccaccacagcgtcc 54
              ||||||||||||||||||||
Sbjct: 128111 acaccaccaccacagcgtcc 128092
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>gb|AC159137.8| Mus musculus 10 BAC RP23-9N9 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 207728

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    actccaaagcagacaccacc 42
             ||||||||||||||||||||
Sbjct: 42557 actccaaagcagacaccacc 42576
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>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006P09,
              complete sequence
          Length = 153950

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    tcgccgtcaccatcgtcgtc 241
              ||||||||||||||||||||
Sbjct: 135252 tcgccgtcaccatcgtcgtc 135271
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>dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0006C01
          Length = 153865

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 430    cgccgccacctcccctgccg 449
              ||||||||||||||||||||
Sbjct: 143543 cgccgccacctcccctgccg 143562
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>dbj|AP002480.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0469E05
          Length = 160769

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 429    tcgccgccacctcccctgcc 448
              ||||||||||||||||||||
Sbjct: 119615 tcgccgccacctcccctgcc 119596
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>dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0034E02
          Length = 165497

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 222   tcgccgtcaccatcgtcgtcatcg 245
             |||||||||||| |||||||||||
Sbjct: 73681 tcgccgtcaccaccgtcgtcatcg 73658
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>dbj|AP002839.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0688A04
          Length = 143969

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   cgccgccacctcccctgccg 449
             ||||||||||||||||||||
Sbjct: 70628 cgccgccacctcccctgccg 70647
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>dbj|AK121250.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101G05, full
            insert sequence
          Length = 3548

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 222  tcgccgtcaccatcgtcgtc 241
            ||||||||||||||||||||
Sbjct: 1270 tcgccgtcaccatcgtcgtc 1289
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>ref|XM_318826.2| Anopheles gambiae str. PEST ENSANGP00000010223
           (ENSANGG00000007734), partial mRNA
          Length = 516

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 246 acctaccgcacaacaccgga 265
           ||||||||||||||||||||
Sbjct: 88  acctaccgcacaacaccgga 107
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>dbj|AK100415.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087M18, full
            insert sequence
          Length = 3726

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 222  tcgccgtcaccatcgtcgtc 241
            ||||||||||||||||||||
Sbjct: 1588 tcgccgtcaccatcgtcgtc 1607
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>gb|AY530951.1| Zea mays putative growth-regulating factor 1 (Z214A02.12), putative 40S
              ribosomal protein S8 (Z214A02.25), and putative casein
              kinase I (Z214A02.27) genes, complete cds
          Length = 158797

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                              
Query: 284    ttcctcgccggggtctccgcggccaaccccaccatctccttccaccgt 331
              |||||| |||| ||||||  ||||||||   |||||||||||||||||
Sbjct: 152863 ttcctcaccggcgtctccttggccaacctgtccatctccttccaccgt 152910
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>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 426    tcctcgccgccacctcccctgccg 449
              ||||||||||||||| ||||||||
Sbjct: 856669 tcctcgccgccaccttccctgccg 856692
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>dbj|AP000805.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-698L23, complete
              sequence
          Length = 180996

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     ctccaaagcagacaccacca 43
              ||||||||||||||||||||
Sbjct: 101904 ctccaaagcagacaccacca 101885
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>emb|CT025573.9| Mouse DNA sequence from clone RP24-274P18 on chromosome 17, complete
              sequence
          Length = 210893

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    ccgtcaccatcgtcgtcatc 244
              ||||||||||||||||||||
Sbjct: 193085 ccgtcaccatcgtcgtcatc 193104
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>emb|CR759894.19| Zebrafish DNA sequence from clone DKEYP-84G6 in linkage group 10,
              complete sequence
          Length = 188280

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    atcgacctaccgcacaacac 261
              ||||||||||||||||||||
Sbjct: 141999 atcgacctaccgcacaacac 141980
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>gb|AC092856.26| Mus musculus strain C57BL/6J chromosome 10 clone rp23-7p15, complete
             sequence
          Length = 221799

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    actccaaagcagacaccacc 42
             ||||||||||||||||||||
Sbjct: 26448 actccaaagcagacaccacc 26429


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,158,364
Number of Sequences: 3902068
Number of extensions: 4158364
Number of successful extensions: 88657
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87722
Number of HSP's gapped (non-prelim): 926
length of query: 586
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 563
effective length of database: 17,143,297,704
effective search space: 9651676607352
effective search space used: 9651676607352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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