ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart21a09 |
|---|---|
| Clone Library Name | barley_pub |
>MT_CRAVI (P23038) Metallothionein (MT)| Length = 74 Score = 30.0 bits (66), Expect = 4.3 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = +1 Query: 205 CSCTPDGSPETRMICRGSPSTGPSLWCTSRCHPEATRIQWCGCTARGGC 351 C+C+ D P T C GP C C +++ C CT+ GGC Sbjct: 12 CACS-DSCPATGCKC------GPGCKCGDDCKCAGCKVK-CSCTSEGGC 52
>LRP2_HUMAN (P98164) Low-density lipoprotein receptor-related protein 2 precursor| (Megalin) (Glycoprotein 330) (gp330) Length = 4655 Score = 30.0 bits (66), Expect = 4.3 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Frame = +1 Query: 154 STRSCAAEYTLPDSGSGCSCTPDGSPETRMICRGSPSTGPSLWCTS-RCHPEA 309 S +C + TL ++ C PDGS E R++C C + RC PE+ Sbjct: 3561 SDGNCTSPQTLCNAHQNC---PDGSDEDRLLCENHHCDSNEWQCANKRCIPES 3610
>TENS1_BOVIN (Q9GLM4) Tensin-1| Length = 1715 Score = 30.0 bits (66), Expect = 4.3 Identities = 20/56 (35%), Positives = 25/56 (44%) Frame = -3 Query: 254 PLQIILVSGLPSGVQEQPEPLSGRVYSAAQDLVLYQLRVYPLPTDDVRYLGQQHSL 87 P Q +L SG SG QP PL+ R Y ++ PLPT Y +SL Sbjct: 1088 PTQPLLDSGFRSGSLGQPSPLAQRNYQSSS----------PLPTAGSSYSSPDYSL 1133
>PSN1_CHICK (Q4JIM4) Presenilin-1 (EC 3.4.23.-) (PS-2) [Contains: Presenilin-1| NTF subunit; Presenilin-1 CTF subunit] Length = 468 Score = 29.6 bits (65), Expect = 5.6 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = -3 Query: 296 QREVHQRLGPVDGEPLQIILVSGLPSGVQEQPEPLSGRVYSAAQDLVLYQLRV 138 Q++ R+GP++ P V LPS Q +P V D + Y + V Sbjct: 342 QQQRDNRIGPIESTPESRAAVQALPSNSQTSEDPEERGVKLGLGDFIFYSVLV 394
>VID21_USTMA (Q4P209) Chromatin modification-related protein VID21| Length = 1654 Score = 29.6 bits (65), Expect = 5.6 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Frame = -3 Query: 257 EPLQIILVSGLPSGVQEQPE-PLSGRVYSAAQDLVLYQLRVYPLPTDDVRYLGQQHSLAV 81 +P+ + +P+ P P S +AA D +++ LR P D L Sbjct: 754 QPMPTLADVSVPTTSSATPTVPASSTPTTAANDKLVHALRSQPKDADSTLTAEMPPQLLA 813 Query: 80 TLRDPVFNMSM 48 TLR P+F+ S+ Sbjct: 814 TLRAPIFSTSV 824
>FA44A_HUMAN (Q8NFC6) Protein FAM44A| Length = 502 Score = 29.6 bits (65), Expect = 5.6 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +1 Query: 190 DSGSGCSCTPDGSPETRMICRGSPSTGPS 276 + GSG + D P+T +I +G P+ GPS Sbjct: 166 EEGSGNTAPDDEKPDTSLITQGVPTPGPS 194
>ICC_HAEIN (P44685) Protein icc homolog| Length = 274 Score = 29.6 bits (65), Expect = 5.6 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 6/76 (7%) Frame = +3 Query: 18 WINVHNAMMMHAHIEYGIPQSNSKRMLLTKVSYIISGQRVNAELIEYQIL-----CCRVH 182 W++ HN H E P +N K +L + Q VN+E YQ++ C + Sbjct: 173 WLDQHNLRNSHELAEVLAPFTNVKAILYGHIH-----QEVNSEWNGYQVMATPATCIQFK 227 Query: 183 SSGQWFRL-LLYPRWK 227 Q+F L L P W+ Sbjct: 228 PDCQYFSLDTLQPGWR 243
>UVRA_METTH (O26543) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 962 Score = 29.6 bits (65), Expect = 5.6 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = -3 Query: 275 LGPVDGEPLQIILVSGLPSGVQEQPEPLSGRVYSAAQDLVLYQLRVYP 132 +GP GE ++ G P + E P+ L+G S + + L ++R P Sbjct: 570 IGPGAGEHGGCVVAEGTPEEIMEDPDSLTGAYLSGRETIPLPEVRRRP 617
>ENGA_STRMU (Q8DS90) GTP-binding protein engA| Length = 436 Score = 29.3 bits (64), Expect = 7.4 Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -3 Query: 227 LPSGVQEQPEPLSGRVYSAA-QDLVLYQLRVYPLPTDDVRYLGQQHSLAVTLRDPVFNMS 51 LP +++ + + R+ SA D+V+ + + P PTD + L ++ V+++ P F + Sbjct: 339 LPDVIKQVSQSQNTRIPSAVLNDVVMDAVAINPTPTDKGKRLKIFYATQVSVKPPTFVIF 398 Query: 50 MHHHGIVH 27 ++ ++H Sbjct: 399 VNEEELMH 406
>CCPR2_EMENI (Q5B1Z0) Putative heme-binding peroxidase (EC 1.11.1.-)| Length = 312 Score = 29.3 bits (64), Expect = 7.4 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Frame = +3 Query: 186 SGQWFRLLLYPRWKPRDKDD-------LQGFAVDRPEPLVHFALSSGSHSDPVVRLYSPR 344 S Q+F+LLL WKP+ ++ + A D EPL+ DP R + R Sbjct: 186 SNQFFKLLLNMEWKPKTLENGVSQFVYIDPEAEDHEEPLMMLPTDVALRDDPAFRPWVER 245
>ENGA_STRR6 (P64063) GTP-binding protein engA| Length = 436 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = -3 Query: 227 LPSGVQEQPEPLSGRVYSAA-QDLVLYQLRVYPLPTDDVRYLGQQHSLAVTLRDPVFNMS 51 LP +++ E + R+ SA D+++ + + P PTD + L ++ V + P F + Sbjct: 339 LPEMIKQISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPTFVIF 398 Query: 50 MHHHGIVH 27 ++ ++H Sbjct: 399 VNEEELMH 406
>ENGA_STRPN (P64062) GTP-binding protein engA| Length = 436 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = -3 Query: 227 LPSGVQEQPEPLSGRVYSAA-QDLVLYQLRVYPLPTDDVRYLGQQHSLAVTLRDPVFNMS 51 LP +++ E + R+ SA D+++ + + P PTD + L ++ V + P F + Sbjct: 339 LPEMIKQISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPTFVIF 398 Query: 50 MHHHGIVH 27 ++ ++H Sbjct: 399 VNEEELMH 406
>ENGA_STRP8 (P64065) GTP-binding protein engA| Length = 436 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = -3 Query: 227 LPSGVQEQPEPLSGRVYSAA-QDLVLYQLRVYPLPTDDVRYLGQQHSLAVTLRDPVFNMS 51 LP ++ E + R+ SA D+++ + + P PTD + L ++ V+++ P F + Sbjct: 339 LPDLIKRISESQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVSVKPPTFVVF 398 Query: 50 MHHHGIVH 27 ++ ++H Sbjct: 399 VNEEELMH 406
>ENGA_STRP6 (Q5XDR3) GTP-binding protein engA| Length = 436 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = -3 Query: 227 LPSGVQEQPEPLSGRVYSAA-QDLVLYQLRVYPLPTDDVRYLGQQHSLAVTLRDPVFNMS 51 LP ++ E + R+ SA D+++ + + P PTD + L ++ V+++ P F + Sbjct: 339 LPDLIKRISESQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVSVKPPTFVVF 398 Query: 50 MHHHGIVH 27 ++ ++H Sbjct: 399 VNEEELMH 406
>ENGA_STRP3 (Q8K8J8) GTP-binding protein engA| Length = 436 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = -3 Query: 227 LPSGVQEQPEPLSGRVYSAA-QDLVLYQLRVYPLPTDDVRYLGQQHSLAVTLRDPVFNMS 51 LP ++ E + R+ SA D+++ + + P PTD + L ++ V+++ P F + Sbjct: 339 LPDLIKRISESQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVSVKPPTFVVF 398 Query: 50 MHHHGIVH 27 ++ ++H Sbjct: 399 VNEEELMH 406
>ENGA_STRP1 (P64064) GTP-binding protein engA| Length = 436 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = -3 Query: 227 LPSGVQEQPEPLSGRVYSAA-QDLVLYQLRVYPLPTDDVRYLGQQHSLAVTLRDPVFNMS 51 LP ++ E + R+ SA D+++ + + P PTD + L ++ V+++ P F + Sbjct: 339 LPDLIKRISESQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVSVKPPTFVVF 398 Query: 50 MHHHGIVH 27 ++ ++H Sbjct: 399 VNEEELMH 406
>ENGA_STRA5 (Q8DY73) GTP-binding protein engA| Length = 436 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = -3 Query: 227 LPSGVQEQPEPLSGRVYSAA-QDLVLYQLRVYPLPTDDVRYLGQQHSLAVTLRDPVFNMS 51 LP ++ E + R+ SA D+++ + + P PTD + L ++ V ++ P F + Sbjct: 339 LPDMIKRISESQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAVKPPTFVVF 398 Query: 50 MHHHGIVH 27 ++ ++H Sbjct: 399 VNEEELMH 406
>ENGA_STRA3 (Q8E3T9) GTP-binding protein engA| Length = 436 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = -3 Query: 227 LPSGVQEQPEPLSGRVYSAA-QDLVLYQLRVYPLPTDDVRYLGQQHSLAVTLRDPVFNMS 51 LP ++ E + R+ SA D+++ + + P PTD + L ++ V ++ P F + Sbjct: 339 LPDMIKRISESQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAVKPPTFVVF 398 Query: 50 MHHHGIVH 27 ++ ++H Sbjct: 399 VNEEELMH 406 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,534,152 Number of Sequences: 219361 Number of extensions: 1454523 Number of successful extensions: 4689 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4530 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4688 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
