ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart21a07 |
|---|---|
| Clone Library Name | barley_pub |
>GP158_MOUSE (Q8C419) Probable G-protein coupled receptor 158 precursor| Length = 1200 Score = 33.1 bits (74), Expect = 0.59 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +2 Query: 62 APLAPPGRPSAATKRTPKSRDHPRRLAGAEMGD 160 A L PPGRP + +RTP+ + H ++L A D Sbjct: 24 ASLDPPGRPDSPRERTPRGKQHGQQLPRASAPD 56
>MAP4_BOVIN (P36225) Microtubule-associated protein 4 (MAP 4)| (Microtubule-associated protein-U) (MAP-U) Length = 1072 Score = 32.7 bits (73), Expect = 0.77 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Frame = +2 Query: 38 PSSAASDHAPLAPPGRPSAATKR---TPKSRDHPRRLAGAEMGDE 163 P S AS P APP RP+AAT R P P+ +A A++ ++ Sbjct: 687 PMSLASGSVPAAPPKRPAAATSRPSTLPSKDTKPKPVAEAKIPEK 731
>TR150_HUMAN (Q9Y2W1) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 955 Score = 30.8 bits (68), Expect = 2.9 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = +2 Query: 41 SSAASDHAPLAPPGRPSAATKRTPKSRDHPRRLAGAEMGDEAK 169 S ++S+H+ + R SA K++ P + AG GDEAK Sbjct: 160 SRSSSNHSRVESSKRKSAKEKKSSSKDSRPSQAAGDNQGDEAK 202
>CCA_AERHY (P45749) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA| nucleotidyltransferase) (tRNA adenylyl-/cytidylyl- transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) (Fragment) Length = 192 Score = 30.0 bits (66), Expect = 5.0 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Frame = -1 Query: 229 DDGGALHEPHGAIRPRRLQVLRLVAHLCAG*PPRV--VSRFWGSF 101 D+ G LH+P+G I+ +VLR V+ A P R+ V+RF F Sbjct: 101 DEEGRLHDPYGGIQDLERRVLRHVSPAFAEDPLRILRVARFAARF 145
>H1B_XENLA (P06893) Histone H1B| Length = 219 Score = 30.0 bits (66), Expect = 5.0 Identities = 15/34 (44%), Positives = 25/34 (73%) Frame = +2 Query: 44 SAASDHAPLAPPGRPSAATKRTPKSRDHPRRLAG 145 +A ++ AP+APP P+AA K+T K + P+++AG Sbjct: 1 TATTETAPVAPPAEPAAA-KKTKKQQ--PKKVAG 31
>MSH6_ARATH (O04716) DNA mismatch repair protein MSH6-1 (AtMsh6-1)| Length = 1324 Score = 29.6 bits (65), Expect = 6.5 Identities = 15/33 (45%), Positives = 21/33 (63%) Frame = +2 Query: 26 TSLFPSSAASDHAPLAPPGRPSAATKRTPKSRD 124 TS F SA+S +P +P PS + K+TPKS + Sbjct: 22 TSFFGKSASSSSSP-SPSPSPSLSNKKTPKSNN 53
>IF2_LACLA (P58002) Translation initiation factor IF-2| Length = 944 Score = 29.6 bits (65), Expect = 6.5 Identities = 23/106 (21%), Positives = 36/106 (33%) Frame = +2 Query: 83 RPSAATKRTPKSRDHPRRLAGAEMGDEAKYLETARADCSVWLMKCPPVVXXXXXXXXXXX 262 +P AA DHPR AG + ++ L +A Sbjct: 70 QPKAAESAKKNKEDHPRTFAGKAVVEDPAILARIKAK-------------EEAEKAAKVE 116 Query: 263 XXXNPNPVVAKVVLSLDPLSSAEPSLQFKMEMSQTSVASTCNLPKS 400 +PVV + + +P+ AEP ++ K E V + N S Sbjct: 117 VASTEHPVVTEKPKASEPVKKAEPKVEAKSEPKVEKVETKDNTATS 162
>YKM1_YEAST (P32330) Hypothetical WD repeat-containing protein YKL121w| Length = 852 Score = 29.3 bits (64), Expect = 8.5 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 2/92 (2%) Frame = +2 Query: 305 SLDPLSSAEPSLQFKMEMSQTSVASTCNLPKSYSLNMF--KDFVPMCVFSETNQGKLSCE 478 +LD L + F + S A + + YSL F DFV +F N + Sbjct: 280 ALDILDANWSKNGFLITASMDKTAKLWHPERKYSLKTFVHPDFVTSAIFFP-NDDRFIIT 338 Query: 479 GKVEHKFDMEPHKDNLLNYAKLCRERTQSLWL 574 G ++H+ + DN ++YA C++ SL L Sbjct: 339 GCLDHRCRLWSILDNEVSYAFDCKDLITSLTL 370
>LIPB_RHIME (Q92QD5) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier| protein]-protein-N-lipoyltransferase) (Lipoate-protein ligase B) Length = 252 Score = 29.3 bits (64), Expect = 8.5 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = +2 Query: 71 APPGRPSAATKRTPKSRDHPRRLAGAEMGDEAKYLETARADCSVWLMKCPPV 226 APP P + P D+P + E EA + AD VWL++ PP+ Sbjct: 25 APPDAPPVRWRIAPSLVDYPEAVETMER--EAAAIADGTADELVWLVEHPPL 74
>WASF1_MOUSE (Q8R5H6) Wiskott-Aldrich syndrome protein family member 1| (WASP-family protein member 1) (WAVE-1 protein) Length = 559 Score = 29.3 bits (64), Expect = 8.5 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = +2 Query: 38 PSSAASDHAPLAPPGRPSAATKRTPKSRDHPRRL 139 PS+A HAPL PP PS + R HP L Sbjct: 459 PSTAPGPHAPLMPPSPPSQVLPASEPKR-HPSTL 491
>TR150_RAT (Q5M7V8) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 951 Score = 29.3 bits (64), Expect = 8.5 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +2 Query: 41 SSAASDHAPLAPPGRPSAATKRTPKSRDHPRRLAGAEMGDEAK 169 S ++S+H+ + R S K++ P + AG GDEAK Sbjct: 160 SRSSSNHSRVESSKRKSTKEKKSSSKDSRPSQAAGDNQGDEAK 202
>TR150_MOUSE (Q569Z6) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 951 Score = 29.3 bits (64), Expect = 8.5 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +2 Query: 41 SSAASDHAPLAPPGRPSAATKRTPKSRDHPRRLAGAEMGDEAK 169 S ++S+H+ + R S K++ P + AG GDEAK Sbjct: 160 SRSSSNHSRVESSKRKSTKEKKSSSKDSRPSQAAGDNQGDEAK 202
>H12_RAT (P15865) Histone H1.2 (H1d)| Length = 218 Score = 29.3 bits (64), Expect = 8.5 Identities = 15/51 (29%), Positives = 21/51 (41%) Frame = +2 Query: 38 PSSAASDHAPLAPPGRPSAATKRTPKSRDHPRRLAGAEMGDEAKYLETARA 190 P+ AA P +TK+TPK P AGA+ K + +A Sbjct: 130 PAGAAKKPKKATGTATPKKSTKKTPKKAKKPAAAAGAKKAKSPKKAKATKA 180 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,616,668 Number of Sequences: 219361 Number of extensions: 1123712 Number of successful extensions: 4694 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4458 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4686 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
