ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart21a06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469701.1| Oryza sativa (japonica cultivar-group), mRNA 474 e-130
2dbj|AK059983.1| Oryza sativa (japonica cultivar-group) cDNA clon... 474 e-130
3gb|AY106386.1| Zea mays PCO090181 mRNA sequence 355 1e-94
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 264 3e-67
5gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genom... 264 3e-67
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 264 3e-67
7dbj|AK072451.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 3e-67
8ref|NM_113184.4| Arabidopsis thaliana protein carrier AT3G22845 ... 44 0.47
9gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.47
10ref|XM_541408.2| PREDICTED: Canis familiaris similar to zinc fin... 44 0.47
11gb|AY093742.1| Arabidopsis thaliana AT3g22845/MWI23_22 mRNA, com... 44 0.47
12gb|AY070742.1| Arabidopsis thaliana AT3g22845/MWI23_22 mRNA, com... 44 0.47
13gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 44 0.47
14dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.47
15ref|NM_211259.1| Eremothecium gossypii AFR357Wp (AFR357W), mRNA 44 0.47
16dbj|AP006429.1| Lotus japonicus genomic DNA, chromosome 1, clone... 44 0.47
17gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 42 1.9
18ref|XM_545906.2| PREDICTED: Canis familiaris similar to SH3 doma... 42 1.9
19gb|AF055582.1|AF055582 Sinorhizobium meliloti sarcosine oxidase ... 42 1.9
20gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.9
21emb|AL591782.1|SME591782 Sinorhizobium meliloti 1021 complete ch... 42 1.9
22gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genom... 40 7.3
23ref|XM_463127.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.3
24ref|NM_186974.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.3
25ref|XM_415718.1| PREDICTED: Gallus gallus similar to hypothetica... 40 7.3
26ref|XM_591214.2| PREDICTED: Bos taurus similar to SH3 domain and... 40 7.3
27gb|AC142257.4| Mus musculus BAC clone RP24-511I4 from chromosome... 40 7.3
28emb|AL645790.8| Zebrafish DNA sequence from clone RP71-6L08 in l... 40 7.3
29emb|AL645750.9| Zebrafish DNA sequence from clone RP71-22E02 in ... 40 7.3
30emb|AJ534871.1|GAC534871 Gasterosteus aculeatus mRNA for follicl... 40 7.3
31gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 7.3
32gb|CP000249.1| Frankia sp. CcI3, complete genome 40 7.3
33dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
34dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
35dbj|AP004304.5| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
36dbj|AP004757.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
37gb|AE005069.1| Halobacterium sp. NRC-1 section 100 of 170 of the... 40 7.3
38dbj|AK121658.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
39gb|AC104328.10| Mus musculus strain C57BL/6J chromosome 18 clone... 40 7.3
40dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 7.3 
>ref|XM_469701.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1091

 Score =  474 bits (239), Expect = e-130
 Identities = 296/315 (93%)
 Strand = Plus / Plus

                                                                       
Query: 225 gtggcgggcggaggcgctgtcggttaccgtgacggacaccgagtgcatccacgagttcgt 284
           |||||| | ||||||||||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct: 213 gtggcgcggggaggcgctgtcggtgacggtgaccgacacggagtgcatccacgagttcgt 272

                                                                       
Query: 285 gccctacgagggcgactccgtcacggggaatttcgtcgtcgtcgaccacgacatcttctg 344
           |||||||||||| ||| ||||  ||||||| |||||||||||||||||||||||||||||
Sbjct: 273 gccctacgagggggacaccgtgtcggggaacttcgtcgtcgtcgaccacgacatcttctg 332

                                                                       
Query: 345 gagctccgaccaccccggcatcgacctcacggtaacttcaccaggtggcaacactgtata 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 333 gagctccgaccaccccggcatcgacctcacggtaacttcaccaggtggcaacactgtgta 392

                                                                       
Query: 405 tacaatgaagggaaagtctggtgacaaatttgagttcaaagctccaaggggcggaatgta 464
           |||| ||||||| |||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct: 393 tacattgaaggggaagtctggtgacaaatttgaatttaaagctccaaggggtggaatgta 452

                                                                       
Query: 465 caagttttgcttccataatccatatggggcacctgaaaccgtttctttctacattcatgt 524
           |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 453 caagttctgcttccataatccatatggagcacctgaaaccgtttctttctacattcatgt 512

                          
Query: 525 tgggcacatacccaa 539
           |||||||||||||||
Sbjct: 513 tgggcacatacccaa 527



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 170 ggtggcggccggcgatgctgctggt 194
           |||||||||||||||||||| ||||
Sbjct: 170 ggtggcggccggcgatgctggtggt 194
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>dbj|AK059983.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F12, full
           insert sequence
          Length = 1084

 Score =  474 bits (239), Expect = e-130
 Identities = 296/315 (93%)
 Strand = Plus / Plus

                                                                       
Query: 225 gtggcgggcggaggcgctgtcggttaccgtgacggacaccgagtgcatccacgagttcgt 284
           |||||| | ||||||||||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct: 209 gtggcgcggggaggcgctgtcggtgacggtgaccgacacggagtgcatccacgagttcgt 268

                                                                       
Query: 285 gccctacgagggcgactccgtcacggggaatttcgtcgtcgtcgaccacgacatcttctg 344
           |||||||||||| ||| ||||  ||||||| |||||||||||||||||||||||||||||
Sbjct: 269 gccctacgagggggacaccgtgtcggggaacttcgtcgtcgtcgaccacgacatcttctg 328

                                                                       
Query: 345 gagctccgaccaccccggcatcgacctcacggtaacttcaccaggtggcaacactgtata 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 329 gagctccgaccaccccggcatcgacctcacggtaacttcaccaggtggcaacactgtgta 388

                                                                       
Query: 405 tacaatgaagggaaagtctggtgacaaatttgagttcaaagctccaaggggcggaatgta 464
           |||| ||||||| |||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct: 389 tacattgaaggggaagtctggtgacaaatttgaatttaaagctccaaggggtggaatgta 448

                                                                       
Query: 465 caagttttgcttccataatccatatggggcacctgaaaccgtttctttctacattcatgt 524
           |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 449 caagttctgcttccataatccatatggagcacctgaaaccgtttctttctacattcatgt 508

                          
Query: 525 tgggcacatacccaa 539
           |||||||||||||||
Sbjct: 509 tgggcacatacccaa 523



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 170 ggtggcggccggcgatgctgctggt 194
           |||||||||||||||||||| ||||
Sbjct: 166 ggtggcggccggcgatgctggtggt 190
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>gb|AY106386.1| Zea mays PCO090181 mRNA sequence
          Length = 1192

 Score =  355 bits (179), Expect = 1e-94
 Identities = 282/315 (89%), Gaps = 1/315 (0%)
 Strand = Plus / Plus

                                                                       
Query: 227 ggcgggcggaggcgctgtcggttaccgtgacggacaccgagtgcatccacgagttcgtgc 286
           |||||||||| ||||| || || || ||||| ||||||||||| |||||||||||||| |
Sbjct: 322 ggcgggcggatgcgctctcagtgacggtgaccgacaccgagtgtatccacgagttcgttc 381

                                                                       
Query: 287 cctacgagggcgactccgtcacggggaatttcgtcgtcgtcgaccacgacatcttctgga 346
           | |||||||| ||| ||||  | ||||| |||||||| ||||||||||||||||||||||
Sbjct: 382 cgtacgagggtgacaccgtgtccgggaacttcgtcgttgtcgaccacgacatcttctgga 441

                                                                       
Query: 347 gctccgaccaccccggcatcgacctcacggtaacttcaccaggtggcaacactgtatata 406
           ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || |
Sbjct: 442 gctccgaccacccaggcatcgacctcacggtaacgtcaccaggtggcaacactgtgtaca 501

                                                                       
Query: 407 caatgaagggaaagtctggtgacaaatttgagttcaaagctcc-aaggggcggaatgtac 465
           || |||||||||| |||||||||||||||||||| |||||||| ||| || || ||||| 
Sbjct: 502 cattgaagggaaaatctggtgacaaatttgagtttaaagctccgaagaggtggcatgtat 561

                                                                       
Query: 466 aagttttgcttccataatccatatggggcacctgaaaccgtttctttctacattcatgtt 525
           ||||| ||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 562 aagttctgcttccataacccatatggagcacctgaaactgtttctttctacatccatgtt 621

                          
Query: 526 gggcacatacccaat 540
           |||||||||||||||
Sbjct: 622 gggcacatacccaat 636



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 163 atggcgaggtggcggccggcgatgctgctggtag 196
           |||||||||||||||||||||  |||||||||||
Sbjct: 258 atggcgaggtggcggccggcggcgctgctggtag 291
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  264 bits (133), Expect = 3e-67
 Identities = 157/165 (95%)
 Strand = Plus / Minus

                                                                            
Query: 375      ggtaacttcaccaggtggcaacactgtatatacaatgaagggaaagtctggtgacaaatt 434
                ||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||
Sbjct: 30305698 ggtaacttcaccaggtggcaacactgtgtatacattgaaggggaagtctggtgacaaatt 30305639

                                                                            
Query: 435      tgagttcaaagctccaaggggcggaatgtacaagttttgcttccataatccatatggggc 494
                ||| || |||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct: 30305638 tgaatttaaagctccaaggggtggaatgtacaagttctgcttccataatccatatggagc 30305579

                                                             
Query: 495      acctgaaaccgtttctttctacattcatgttgggcacatacccaa 539
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30305578 acctgaaaccgtttctttctacattcatgttgggcacatacccaa 30305534



 Score =  216 bits (109), Expect = 6e-53
 Identities = 142/153 (92%)
 Strand = Plus / Minus

                                                                            
Query: 225      gtggcgggcggaggcgctgtcggttaccgtgacggacaccgagtgcatccacgagttcgt 284
                |||||| | ||||||||||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct: 30306855 gtggcgcggggaggcgctgtcggtgacggtgaccgacacggagtgcatccacgagttcgt 30306796

                                                                            
Query: 285      gccctacgagggcgactccgtcacggggaatttcgtcgtcgtcgaccacgacatcttctg 344
                |||||||||||| ||| ||||  ||||||| |||||||||||||||||||||||||||||
Sbjct: 30306795 gccctacgagggggacaccgtgtcggggaacttcgtcgtcgtcgaccacgacatcttctg 30306736

                                                 
Query: 345      gagctccgaccaccccggcatcgacctcacggt 377
                |||||||||||||||||||||||||||||||||
Sbjct: 30306735 gagctccgaccaccccggcatcgacctcacggt 30306703



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 170      ggtggcggccggcgatgctgctggt 194
                |||||||||||||||||||| ||||
Sbjct: 30306898 ggtggcggccggcgatgctggtggt 30306874



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 317      tcgtcgtcgtcgaccacgac 336
                ||||||||||||||||||||
Sbjct: 22653658 tcgtcgtcgtcgaccacgac 22653639
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>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete
             sequence
          Length = 130359

 Score =  264 bits (133), Expect = 3e-67
 Identities = 157/165 (95%)
 Strand = Plus / Minus

                                                                         
Query: 375   ggtaacttcaccaggtggcaacactgtatatacaatgaagggaaagtctggtgacaaatt 434
             ||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||
Sbjct: 97378 ggtaacttcaccaggtggcaacactgtgtatacattgaaggggaagtctggtgacaaatt 97319

                                                                         
Query: 435   tgagttcaaagctccaaggggcggaatgtacaagttttgcttccataatccatatggggc 494
             ||| || |||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct: 97318 tgaatttaaagctccaaggggtggaatgtacaagttctgcttccataatccatatggagc 97259

                                                          
Query: 495   acctgaaaccgtttctttctacattcatgttgggcacatacccaa 539
             |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97258 acctgaaaccgtttctttctacattcatgttgggcacatacccaa 97214



 Score =  216 bits (109), Expect = 6e-53
 Identities = 142/153 (92%)
 Strand = Plus / Minus

                                                                         
Query: 225   gtggcgggcggaggcgctgtcggttaccgtgacggacaccgagtgcatccacgagttcgt 284
             |||||| | ||||||||||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct: 98535 gtggcgcggggaggcgctgtcggtgacggtgaccgacacggagtgcatccacgagttcgt 98476

                                                                         
Query: 285   gccctacgagggcgactccgtcacggggaatttcgtcgtcgtcgaccacgacatcttctg 344
             |||||||||||| ||| ||||  ||||||| |||||||||||||||||||||||||||||
Sbjct: 98475 gccctacgagggggacaccgtgtcggggaacttcgtcgtcgtcgaccacgacatcttctg 98416

                                              
Query: 345   gagctccgaccaccccggcatcgacctcacggt 377
             |||||||||||||||||||||||||||||||||
Sbjct: 98415 gagctccgaccaccccggcatcgacctcacggt 98383



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 170   ggtggcggccggcgatgctgctggt 194
             |||||||||||||||||||| ||||
Sbjct: 98578 ggtggcggccggcgatgctggtggt 98554
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  264 bits (133), Expect = 3e-67
 Identities = 157/165 (95%)
 Strand = Plus / Minus

                                                                            
Query: 375      ggtaacttcaccaggtggcaacactgtatatacaatgaagggaaagtctggtgacaaatt 434
                ||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||
Sbjct: 30397120 ggtaacttcaccaggtggcaacactgtgtatacattgaaggggaagtctggtgacaaatt 30397061

                                                                            
Query: 435      tgagttcaaagctccaaggggcggaatgtacaagttttgcttccataatccatatggggc 494
                ||| || |||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct: 30397060 tgaatttaaagctccaaggggtggaatgtacaagttctgcttccataatccatatggagc 30397001

                                                             
Query: 495      acctgaaaccgtttctttctacattcatgttgggcacatacccaa 539
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30397000 acctgaaaccgtttctttctacattcatgttgggcacatacccaa 30396956



 Score =  216 bits (109), Expect = 6e-53
 Identities = 142/153 (92%)
 Strand = Plus / Minus

                                                                            
Query: 225      gtggcgggcggaggcgctgtcggttaccgtgacggacaccgagtgcatccacgagttcgt 284
                |||||| | ||||||||||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct: 30398277 gtggcgcggggaggcgctgtcggtgacggtgaccgacacggagtgcatccacgagttcgt 30398218

                                                                            
Query: 285      gccctacgagggcgactccgtcacggggaatttcgtcgtcgtcgaccacgacatcttctg 344
                |||||||||||| ||| ||||  ||||||| |||||||||||||||||||||||||||||
Sbjct: 30398217 gccctacgagggggacaccgtgtcggggaacttcgtcgtcgtcgaccacgacatcttctg 30398158

                                                 
Query: 345      gagctccgaccaccccggcatcgacctcacggt 377
                |||||||||||||||||||||||||||||||||
Sbjct: 30398157 gagctccgaccaccccggcatcgacctcacggt 30398125



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 170      ggtggcggccggcgatgctgctggt 194
                |||||||||||||||||||| ||||
Sbjct: 30398320 ggtggcggccggcgatgctggtggt 30398296



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 317      tcgtcgtcgtcgaccacgac 336
                ||||||||||||||||||||
Sbjct: 22646687 tcgtcgtcgtcgaccacgac 22646668
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>dbj|AK072451.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120I03, full
            insert sequence
          Length = 2829

 Score =  264 bits (133), Expect = 3e-67
 Identities = 157/165 (95%)
 Strand = Plus / Plus

                                                                        
Query: 375  ggtaacttcaccaggtggcaacactgtatatacaatgaagggaaagtctggtgacaaatt 434
            ||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||
Sbjct: 1367 ggtaacttcaccaggtggcaacactgtgtatacattgaaggggaagtctggtgacaaatt 1426

                                                                        
Query: 435  tgagttcaaagctccaaggggcggaatgtacaagttttgcttccataatccatatggggc 494
            ||| || |||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct: 1427 tgaatttaaagctccaaggggtggaatgtacaagttctgcttccataatccatatggagc 1486

                                                         
Query: 495  acctgaaaccgtttctttctacattcatgttgggcacatacccaa 539
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1487 acctgaaaccgtttctttctacattcatgttgggcacatacccaa 1531



 Score =  216 bits (109), Expect = 6e-53
 Identities = 142/153 (92%)
 Strand = Plus / Plus

                                                                       
Query: 225 gtggcgggcggaggcgctgtcggttaccgtgacggacaccgagtgcatccacgagttcgt 284
           |||||| | ||||||||||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct: 210 gtggcgcggggaggcgctgtcggtgacggtgaccgacacggagtgcatccacgagttcgt 269

                                                                       
Query: 285 gccctacgagggcgactccgtcacggggaatttcgtcgtcgtcgaccacgacatcttctg 344
           |||||||||||| ||| ||||  ||||||| |||||||||||||||||||||||||||||
Sbjct: 270 gccctacgagggggacaccgtgtcggggaacttcgtcgtcgtcgaccacgacatcttctg 329

                                            
Query: 345 gagctccgaccaccccggcatcgacctcacggt 377
           |||||||||||||||||||||||||||||||||
Sbjct: 330 gagctccgaccaccccggcatcgacctcacggt 362



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 170 ggtggcggccggcgatgctgctggt 194
           |||||||||||||||||||| ||||
Sbjct: 167 ggtggcggccggcgatgctggtggt 191
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>ref|NM_113184.4| Arabidopsis thaliana protein carrier AT3G22845 mRNA, complete cds
          Length = 908

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 133/170 (78%)
 Strand = Plus / Plus

                                                                       
Query: 316 ttcgtcgtcgtcgaccacgacatcttctggagctccgaccaccccggcatcgacctcacg 375
           |||||||||||||| || || ||||||||| | ||||| || || ||  | ||  |||||
Sbjct: 223 ttcgtcgtcgtcgatcatgatatcttctggggatccgatcatcctggtttggatttcacg 282

                                                                       
Query: 376 gtaacttcaccaggtggcaacactgtatatacaatgaagggaaagtctggtgacaaattt 435
           || || ||||||| ||| |||| |||| | ||  | |||||||  ||||| || || |||
Sbjct: 283 gtgacgtcaccagctgggaacattgtacagactttaaagggaacatctggagataagttt 342

                                                             
Query: 436 gagttcaaagctccaaggggcggaatgtacaagttttgcttccataatcc 485
           ||||| || |||||||   | ||||||||||| ||||| ||||| |||||
Sbjct: 343 gagtttaaggctccaaaaagtggaatgtacaaattttgtttccacaatcc 392
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>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10,
             complete sequence
          Length = 156772

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 317   tcgtcgtcgtcgaccacgacat 338
             ||||||||||||||||||||||
Sbjct: 84999 tcgtcgtcgtcgaccacgacat 84978
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>ref|XM_541408.2| PREDICTED: Canis familiaris similar to zinc finger protein 579
           (LOC484293), mRNA
          Length = 2156

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 196 gcggagctggcgctggcggcgg 217
           ||||||||||||||||||||||
Sbjct: 663 gcggagctggcgctggcggcgg 684
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>gb|AY093742.1| Arabidopsis thaliana AT3g22845/MWI23_22 mRNA, complete cds
          Length = 645

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 133/170 (78%)
 Strand = Plus / Plus

                                                                       
Query: 316 ttcgtcgtcgtcgaccacgacatcttctggagctccgaccaccccggcatcgacctcacg 375
           |||||||||||||| || || ||||||||| | ||||| || || ||  | ||  |||||
Sbjct: 157 ttcgtcgtcgtcgatcatgatatcttctggggatccgatcatcctggtttggatttcacg 216

                                                                       
Query: 376 gtaacttcaccaggtggcaacactgtatatacaatgaagggaaagtctggtgacaaattt 435
           || || ||||||| ||| |||| |||| | ||  | |||||||  ||||| || || |||
Sbjct: 217 gtgacgtcaccagctgggaacattgtacagactttaaagggaacatctggagataagttt 276

                                                             
Query: 436 gagttcaaagctccaaggggcggaatgtacaagttttgcttccataatcc 485
           ||||| || |||||||   | ||||||||||| ||||| ||||| |||||
Sbjct: 277 gagtttaaggctccaaaaagtggaatgtacaaattttgtttccacaatcc 326
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>gb|AY070742.1| Arabidopsis thaliana AT3g22845/MWI23_22 mRNA, complete cds
          Length = 891

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 133/170 (78%)
 Strand = Plus / Plus

                                                                       
Query: 316 ttcgtcgtcgtcgaccacgacatcttctggagctccgaccaccccggcatcgacctcacg 375
           |||||||||||||| || || ||||||||| | ||||| || || ||  | ||  |||||
Sbjct: 222 ttcgtcgtcgtcgatcatgatatcttctggggatccgatcatcctggtttggatttcacg 281

                                                                       
Query: 376 gtaacttcaccaggtggcaacactgtatatacaatgaagggaaagtctggtgacaaattt 435
           || || ||||||| ||| |||| |||| | ||  | |||||||  ||||| || || |||
Sbjct: 282 gtgacgtcaccagctgggaacattgtacagactttaaagggaacatctggagataagttt 341

                                                             
Query: 436 gagttcaaagctccaaggggcggaatgtacaagttttgcttccataatcc 485
           ||||| || |||||||   | ||||||||||| ||||| ||||| |||||
Sbjct: 342 gagtttaaggctccaaaaagtggaatgtacaaattttgtttccacaatcc 391
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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
               complete sequence
          Length = 1813164

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 275     acgagttcgtgccctacgagggcgac 300
               |||||| |||||||||||||||||||
Sbjct: 1087300 acgagtccgtgccctacgagggcgac 1087325
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 317     tcgtcgtcgtcgaccacgacat 338
               ||||||||||||||||||||||
Sbjct: 4198520 tcgtcgtcgtcgaccacgacat 4198499
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>ref|NM_211259.1| Eremothecium gossypii AFR357Wp (AFR357W), mRNA
          Length = 1305

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 275  acgagttcgtgccctacgagggcgac 300
            |||||| |||||||||||||||||||
Sbjct: 1226 acgagtccgtgccctacgagggcgac 1251
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>dbj|AP006429.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT17D07, TM0322,
             complete sequence
          Length = 109570

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 508   tctttctacattcatgttgggcacat 533
             |||||||||||||||||||| |||||
Sbjct: 42610 tctttctacattcatgttggtcacat 42585
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 482     atccatatggggcacctgaaa 502
               |||||||||||||||||||||
Sbjct: 2942565 atccatatggggcacctgaaa 2942585
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>ref|XM_545906.2| PREDICTED: Canis familiaris similar to SH3 domain and
            tetratricopeptide repeats 1 (LOC488788), mRNA
          Length = 4449

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 200  agctggcgctggcggcggccg 220
            |||||||||||||||||||||
Sbjct: 4220 agctggcgctggcggcggccg 4240
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>gb|AF055582.1|AF055582 Sinorhizobium meliloti sarcosine oxidase operon, partial sequence;
            glutamine synthetase III operon, complete sequence; and
            putative permease gene, complete cds
          Length = 10786

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 200  agctggcgctggcggcggccg 220
            |||||||||||||||||||||
Sbjct: 1041 agctggcgctggcggcggccg 1021
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 200     agctggcgctggcggcggccg 220
               |||||||||||||||||||||
Sbjct: 1713927 agctggcgctggcggcggccg 1713947
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>emb|AL591782.1|SME591782 Sinorhizobium meliloti 1021 complete chromosome; segment 1/12
          Length = 260050

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 200    agctggcgctggcggcggccg 220
              |||||||||||||||||||||
Sbjct: 101734 agctggcgctggcggcggccg 101714
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>gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genomic sequence, complete
             sequence
          Length = 157397

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   tcgtcgtcgtcgaccacgac 336
             ||||||||||||||||||||
Sbjct: 14488 tcgtcgtcgtcgaccacgac 14507
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>ref|XM_463127.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1122

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 317 tcgtcgtcgtcgaccacgac 336
           ||||||||||||||||||||
Sbjct: 272 tcgtcgtcgtcgaccacgac 253
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>ref|NM_186974.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 624

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 164 tggcgaggtggcggccggcg 183
           ||||||||||||||||||||
Sbjct: 24  tggcgaggtggcggccggcg 5
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>ref|XM_415718.1| PREDICTED: Gallus gallus similar to hypothetical protein FLJ20315
           (LOC417470), mRNA
          Length = 7051

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 gctggcgctggcggcggccg 220
           ||||||||||||||||||||
Sbjct: 879 gctggcgctggcggcggccg 898
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>ref|XM_591214.2| PREDICTED: Bos taurus similar to SH3 domain and tetratricopeptide
            repeats 1 (LOC513522), mRNA
          Length = 4665

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 200  agctggcgctggcggcggcc 219
            ||||||||||||||||||||
Sbjct: 4385 agctggcgctggcggcggcc 4404
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>gb|AC142257.4| Mus musculus BAC clone RP24-511I4 from chromosome 18, complete sequence
          Length = 140990

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   tatacaatgaagggaaagtc 422
             ||||||||||||||||||||
Sbjct: 37653 tatacaatgaagggaaagtc 37672
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>emb|AL645790.8| Zebrafish DNA sequence from clone RP71-6L08 in linkage group 23
             Contains the 3' part of a novel gene similar to CELSR
             (cadherin, EGF LAG seven-pass G-type receptor), part of a
             novel gene and a CpG island, complete sequence
          Length = 165257

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 467   agttttgcttccataatcca 486
             ||||||||||||||||||||
Sbjct: 43171 agttttgcttccataatcca 43152
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>emb|AL645750.9| Zebrafish DNA sequence from clone RP71-22E02 in linkage group 4
             Contains part of a novel gene similar to human CELSR1 (EGF
             LAG seven-pass G-type receptor 1 cadherin) and two CpG
             islands, complete sequence
          Length = 151797

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 467   agttttgcttccataatcca 486
             ||||||||||||||||||||
Sbjct: 45817 agttttgcttccataatcca 45798
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>emb|AJ534871.1|GAC534871 Gasterosteus aculeatus mRNA for follicle stimulating hormone beta
           subunit (fsh beta gene)
          Length = 540

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 gctggcgctggcggcggccg 220
           ||||||||||||||||||||
Sbjct: 120 gctggcgctggcggcggccg 139
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 315     tttcgtcgtcgtcgaccacg 334
               ||||||||||||||||||||
Sbjct: 1633977 tttcgtcgtcgtcgaccacg 1633958
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    cggagctggcgctggcggcg 216
              ||||||||||||||||||||
Sbjct: 235757 cggagctggcgctggcggcg 235776
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 164     tggcgaggtggcggccggcg 183
               ||||||||||||||||||||
Sbjct: 9317287 tggcgaggtggcggccggcg 9317268
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 196      gcggagctggcgctggcggcggccgcag 223
                |||| |||||||| ||||||||||||||
Sbjct: 12606011 gcggcgctggcgccggcggcggccgcag 12606038
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>dbj|AP004304.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0483E06
          Length = 159035

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   tggcgaggtggcggccggcg 183
             ||||||||||||||||||||
Sbjct: 80131 tggcgaggtggcggccggcg 80112
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>dbj|AP004757.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0652D10
          Length = 156744

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 196   gcggagctggcgctggcggcggccgcag 223
             |||| |||||||| ||||||||||||||
Sbjct: 88324 gcggcgctggcgccggcggcggccgcag 88351
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>gb|AE005069.1| Halobacterium sp. NRC-1 section 100 of 170 of the complete genome
          Length = 10869

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 ccgaccaccccggcatcgac 369
           ||||||||||||||||||||
Sbjct: 402 ccgaccaccccggcatcgac 421
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>dbj|AK121658.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033063K21, full
           insert sequence
          Length = 1597

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 196 gcggagctggcgctggcggcggccgcag 223
           |||| |||||||| ||||||||||||||
Sbjct: 451 gcggcgctggcgccggcggcggccgcag 424
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>gb|AC104328.10| Mus musculus strain C57BL/6J chromosome 18 clone rp23-352p20, complete
             sequence
          Length = 183187

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 403   tatacaatgaagggaaagtc 422
             ||||||||||||||||||||
Sbjct: 38527 tatacaatgaagggaaagtc 38508
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 324     cgtcgaccacgacatcttct 343
               ||||||||||||||||||||
Sbjct: 2917030 cgtcgaccacgacatcttct 2917011



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 324    cgtcgaccacgacatcttct 343
              ||||||||||||||||||||
Sbjct: 302412 cgtcgaccacgacatcttct 302393


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,249,685
Number of Sequences: 3902068
Number of extensions: 3249685
Number of successful extensions: 73391
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 72293
Number of HSP's gapped (non-prelim): 1097
length of query: 540
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 517
effective length of database: 17,143,297,704
effective search space: 8863084912968
effective search space used: 8863084912968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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