ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart20h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK071057.1| Oryza sativa (japonica cultivar-group) cDNA clon... 402 e-109
2dbj|AK058696.1| Oryza sativa (japonica cultivar-group) cDNA clon... 402 e-109
3ref|XM_468644.1| Oryza sativa (japonica cultivar-group), mRNA 373 e-100
4gb|BT016272.1| Zea mays clone Contig105 mRNA sequence 371 2e-99
5gb|AY109726.1| Zea mays CL8519_1 mRNA sequence 303 3e-79
6gb|AC092262.6| Oryza sativa (japonica cultivar-group) chromosome... 220 4e-54
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 220 4e-54
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 220 4e-54
9gb|AF037459.1|AF037459 Fritillaria agrestis clp-like energy-depe... 60 8e-06
10ref|XM_662010.1| Cryptosporidium hominis TU502 1,4-alpha-glucan ... 42 2.0
11gb|AC159548.5| Mus musculus 6 BAC RP23-77B7 (Roswell Park Cancer... 42 2.0
12emb|BX538352.1| Cryptosporidium parvum chromosome 6, complete se... 42 2.0
13ref|XM_627714.1| Cryptosporidium parvum Iowa II 1,4-alpha-glucan... 42 2.0
14gb|AC153992.7| Mus musculus 6 BAC RP24-116E17 (Roswell Park Canc... 42 2.0
15emb|AL713977.13| Mouse DNA sequence from clone RP23-303A21 on ch... 42 2.0
16gb|AC135469.4| Mus musculus BAC clone RP24-406G8 from 13, comple... 42 2.0
17gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 7.7
18gb|BT013042.1| Lycopersicon esculentum clone 114292R, mRNA sequence 40 7.7
19ref|XM_533338.2| PREDICTED: Canis familiaris similar to DNA repl... 40 7.7
20emb|Z83823.1|HS394F12 Human DNA sequence from clone RP3-394F12 o... 40 7.7
21emb|AL450328.6| Human DNA sequence from clone RP11-193H22 on chr... 40 7.7
22emb|AL031224.1|HS336H9 Human DNA sequence from clone RP3-336H9 o... 40 7.7
23ref|XM_968572.1| PREDICTED: Tribolium castaneum similar to CG180... 40 7.7
24dbj|AP001625.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 7.7
25dbj|AK124103.1| Homo sapiens cDNA FLJ42109 fis, clone TESOP2008563 40 7.7
26gb|U18916.2|SCE9781 Saccharomyces cerevisiae chromosome V cosmid... 40 7.7
27gb|AC024900.20| Homo sapiens 12 BAC RP11-549E9 (Roswell Park Can... 40 7.7
28gb|AY766186.1| Uncultured murine large bowel bacterium BAC 54B, ... 40 7.7
29gb|AC104695.2| Homo sapiens BAC clone RP11-373D23 from 2, comple... 40 7.7
30dbj|BS000228.1| Pan troglodytes chromosome 22 clone:RP43-139F08,... 40 7.7
31emb|BX647822.1|HSM807968 Homo sapiens mRNA; cDNA DKFZp686E0486 (... 40 7.7
32emb|BX255891.5| Zebrafish DNA sequence from clone DKEY-263P20 in... 40 7.7
33dbj|AP001747.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 7.7
34gb|DQ331727.1| Synthetic construct Saccharomyces cerevisiae clon... 40 7.7
35gb|AC171205.1| Mus musculus BAC clone RP23-441H20 from chromosom... 40 7.7
36gb|L38581.1|TOMCLPP Lycopersicon esculentum clp-like energy-depe... 40 7.7 
>dbj|AK071057.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078E16, full
           insert sequence
          Length = 1288

 Score =  402 bits (203), Expect = e-109
 Identities = 332/375 (88%)
 Strand = Plus / Plus

                                                                       
Query: 192 gttggatgagaggatacacggtcaatcttatctgaggaaaaatacaatcgtggcatcaga 251
           |||||| |||||||||||  |||| |||| |||||||||||||||||| || ||||||||
Sbjct: 194 gttggacgagaggatacattgtcattcttctctgaggaaaaatacaattgtagcatcaga 253

                                                                       
Query: 252 gaatgaaaatccacctttaatgcctgctatcatgactcctggtggctctctggatctggc 311
           ||||||||||||||||||||||||||| || |||||||||| |||  |||| ||||||||
Sbjct: 254 gaatgaaaatccacctttaatgcctgccataatgactcctgctggtgctcttgatctggc 313

                                                                       
Query: 312 aaccgtactcctgggaaaccgtataatcttcattggtcaatatgttaactcgcaagtggc 371
           ||| ||| |  |||| ||||| || |||||||||||||||||| ||||||||||||| ||
Sbjct: 314 aactgtattgttggggaaccgcattatcttcattggtcaatatattaactcgcaagtagc 373

                                                                       
Query: 372 acaacgtgtaatatcacagcttgtctcactttctgctatagatgaagagggtgatgttct 431
           ||| ||||||||||||||||||||| ||||| ||||| | |||||||||| |||| ||||
Sbjct: 374 acagcgtgtaatatcacagcttgtcacacttgctgctgttgatgaagaggctgatattct 433

                                                                       
Query: 432 gatctatcttaactgccctggcggaagtctctattccatcttagcaatttacgattgcat 491
           |||||| || |||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 434 gatctacctgaactgccccggcggaagtctctactccatcttagcaatttatgattgcat 493

                                                                       
Query: 492 gtcctggatcacaccgaaagttgggacagtgtgttttggtgttgttgctagtcaagcagc 551
           |||||||||||  || |||||||| |||||||| ||||||||||||||||| || |||||
Sbjct: 494 gtcctggatcaagcccaaagttggaacagtgtgctttggtgttgttgctagccaggcagc 553

                          
Query: 552 gattattcttgctgg 566
            ||||| ||||||||
Sbjct: 554 aattatacttgctgg 568
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>dbj|AK058696.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-B09, full
           insert sequence
          Length = 1275

 Score =  402 bits (203), Expect = e-109
 Identities = 332/375 (88%)
 Strand = Plus / Plus

                                                                       
Query: 192 gttggatgagaggatacacggtcaatcttatctgaggaaaaatacaatcgtggcatcaga 251
           |||||| |||||||||||  |||| |||| |||||||||||||||||| || ||||||||
Sbjct: 200 gttggacgagaggatacattgtcattcttctctgaggaaaaatacaattgtagcatcaga 259

                                                                       
Query: 252 gaatgaaaatccacctttaatgcctgctatcatgactcctggtggctctctggatctggc 311
           ||||||||||||||||||||||||||| || |||||||||| |||  |||| ||||||||
Sbjct: 260 gaatgaaaatccacctttaatgcctgccataatgactcctgctggtgctcttgatctggc 319

                                                                       
Query: 312 aaccgtactcctgggaaaccgtataatcttcattggtcaatatgttaactcgcaagtggc 371
           ||| ||| |  |||| ||||| || |||||||||||||||||| ||||||||||||| ||
Sbjct: 320 aactgtattgttggggaaccgcattatcttcattggtcaatatattaactcgcaagtagc 379

                                                                       
Query: 372 acaacgtgtaatatcacagcttgtctcactttctgctatagatgaagagggtgatgttct 431
           ||| ||||||||||||||||||||| ||||| ||||| | |||||||||| |||| ||||
Sbjct: 380 acagcgtgtaatatcacagcttgtcacacttgctgctgttgatgaagaggctgatattct 439

                                                                       
Query: 432 gatctatcttaactgccctggcggaagtctctattccatcttagcaatttacgattgcat 491
           |||||| || |||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 440 gatctacctgaactgccccggcggaagtctctactccatcttagcaatttatgattgcat 499

                                                                       
Query: 492 gtcctggatcacaccgaaagttgggacagtgtgttttggtgttgttgctagtcaagcagc 551
           |||||||||||  || |||||||| |||||||| ||||||||||||||||| || |||||
Sbjct: 500 gtcctggatcaagcccaaagttggaacagtgtgctttggtgttgttgctagccaggcagc 559

                          
Query: 552 gattattcttgctgg 566
            ||||| ||||||||
Sbjct: 560 aattatacttgctgg 574
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>ref|XM_468644.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 768

 Score =  373 bits (188), Expect = e-100
 Identities = 302/340 (88%)
 Strand = Plus / Plus

                                                                       
Query: 227 ggaaaaatacaatcgtggcatcagagaatgaaaatccacctttaatgcctgctatcatga 286
           ||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 206 ggaaaaatacaattgtagcatcagagaatgaaaatccacctttaatgcctgccataatga 265

                                                                       
Query: 287 ctcctggtggctctctggatctggcaaccgtactcctgggaaaccgtataatcttcattg 346
           |||||| |||  |||| ||||||||||| ||| |  |||| ||||| || ||||||||||
Sbjct: 266 ctcctgctggtgctcttgatctggcaactgtattgttggggaaccgcattatcttcattg 325

                                                                       
Query: 347 gtcaatatgttaactcgcaagtggcacaacgtgtaatatcacagcttgtctcactttctg 406
           |||||||| ||||||||||||| ||||| ||||||||||||||||||||| ||||| |||
Sbjct: 326 gtcaatatattaactcgcaagtagcacagcgtgtaatatcacagcttgtcacacttgctg 385

                                                                       
Query: 407 ctatagatgaagagggtgatgttctgatctatcttaactgccctggcggaagtctctatt 466
           || | |||||||||| |||| |||||||||| || |||||||| |||||||||||||| |
Sbjct: 386 ctgttgatgaagaggctgatattctgatctacctgaactgccccggcggaagtctctact 445

                                                                       
Query: 467 ccatcttagcaatttacgattgcatgtcctggatcacaccgaaagttgggacagtgtgtt 526
           |||||||||||||||| |||||||||||||||||||  || |||||||| |||||||| |
Sbjct: 446 ccatcttagcaatttatgattgcatgtcctggatcaagcccaaagttggaacagtgtgct 505

                                                   
Query: 527 ttggtgttgttgctagtcaagcagcgattattcttgctgg 566
           |||||||||||||||| || ||||| ||||| ||||||||
Sbjct: 506 ttggtgttgttgctagccaggcagcaattatacttgctgg 545
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>gb|BT016272.1| Zea mays clone Contig105 mRNA sequence
          Length = 1436

 Score =  371 bits (187), Expect = 2e-99
 Identities = 301/339 (88%)
 Strand = Plus / Plus

                                                                       
Query: 230 aaaatacaatcgtggcatcagagaatgaaaatccacctttaatgcctgctatcatgactc 289
           |||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct: 279 aaaatacaatagtggcatctgagaatgaaaatccacctttaatgccggcaatcatgactc 338

                                                                       
Query: 290 ctggtggctctctggatctggcaaccgtactcctgggaaaccgtataatcttcattggtc 349
           |||||||  | || ||||| ||||| ||||| |||||||| ||||||||||||||||| |
Sbjct: 339 ctggtggtgcgcttgatctcgcaactgtactactgggaaatcgtataatcttcattggcc 398

                                                                       
Query: 350 aatatgttaactcgcaagtggcacaacgtgtaatatcacagcttgtctcactttctgcta 409
           ||||| ||||||| || ||||| |||||||| ||||||||||||||  ||||| |||| |
Sbjct: 399 aatatattaactcccaggtggcccaacgtgtgatatcacagcttgtaacacttgctgcca 458

                                                                       
Query: 410 tagatgaagagggtgatgttctgatctatcttaactgccctggcggaagtctctattcca 469
           | |||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||| |
Sbjct: 459 tcgatgaagaggctgatattctgatatatcttaactgccctggtggaagtctctattcga 518

                                                                       
Query: 470 tcttagcaatttacgattgcatgtcctggatcacaccgaaagttgggacagtgtgttttg 529
           ||||||| ||||| ||||||||||||||||| |  || ||||||||||||||||| ||||
Sbjct: 519 tcttagcgatttatgattgcatgtcctggataaagcccaaagttgggacagtgtgctttg 578

                                                  
Query: 530 gtgttgttgctagtcaagcagcgattattcttgctggtg 568
           |||||||||||||||||||||| ||||| ||||| ||||
Sbjct: 579 gtgttgttgctagtcaagcagcaattatccttgcaggtg 617
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>gb|AY109726.1| Zea mays CL8519_1 mRNA sequence
          Length = 1183

 Score =  303 bits (153), Expect = 3e-79
 Identities = 255/289 (88%)
 Strand = Plus / Minus

                                                                        
Query: 230  aaaatacaatcgtggcatcagagaatgaaaatccacctttaatgcctgctatcatgactc 289
            |||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct: 1084 aaaatacaatagtggcatctgagaatgaaaatccacctttaatgccggcaatcatgactc 1025

                                                                        
Query: 290  ctggtggctctctggatctggcaaccgtactcctgggaaaccgtataatcttcattggtc 349
            |||||||  | || ||||| ||||| ||||| |||||||| ||||||||||||||||| |
Sbjct: 1024 ctggtggtgcgcttgatctcgcaactgtactactgggaaatcgtataatcttcattggcc 965

                                                                        
Query: 350  aatatgttaactcgcaagtggcacaacgtgtaatatcacagcttgtctcactttctgcta 409
            ||||| ||||||| || ||||| |||||||| ||||||||||||||  ||||| |||| |
Sbjct: 964  aatatattaactcccaggtggcccaacgtgtgatatcacagcttgtaacacttgctgcca 905

                                                                        
Query: 410  tagatgaagagggtgatgttctgatctatcttaactgccctggcggaagtctctattcca 469
            | |||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||| |
Sbjct: 904  tcgatgaagaggctgatattctgatatatcttaactgccctggtggaagtctctattcga 845

                                                             
Query: 470  tcttagcaatttacgattgcatgtcctggatcacaccgaaagttgggac 518
            ||||||| ||||| ||||||||||||||||| |  || |||||||||||
Sbjct: 844  tcttagcgatttatgattgcatgtcctggataaagcccaaagttgggac 796
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>gb|AC092262.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C05
             map C12819S, complete sequence
          Length = 113266

 Score =  220 bits (111), Expect = 4e-54
 Identities = 183/207 (88%)
 Strand = Plus / Plus

                                                                         
Query: 226   aggaaaaatacaatcgtggcatcagagaatgaaaatccacctttaatgcctgctatcatg 285
             |||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||
Sbjct: 45548 aggaaaaatacaattgtagcatcagagaatgaaaatccacctttaatgcctgccataatg 45607

                                                                         
Query: 286   actcctggtggctctctggatctggcaaccgtactcctgggaaaccgtataatcttcatt 345
             ||||||| |||  |||| ||||||||||| ||| |  |||| ||||| || |||||||||
Sbjct: 45608 actcctgctggtgctcttgatctggcaactgtattgttggggaaccgcattatcttcatt 45667

                                                                         
Query: 346   ggtcaatatgttaactcgcaagtggcacaacgtgtaatatcacagcttgtctcactttct 405
             ||||||||| ||||||||||||| ||||| ||||||||||||||||||||| ||||| ||
Sbjct: 45668 ggtcaatatattaactcgcaagtagcacagcgtgtaatatcacagcttgtcacacttgct 45727

                                        
Query: 406   gctatagatgaagagggtgatgttctg 432
             ||| | |||||||||| |||| |||||
Sbjct: 45728 gctgttgatgaagaggctgatattctg 45754



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 62/67 (92%)
 Strand = Plus / Plus

                                                                         
Query: 432   gatctatcttaactgccctggcggaagtctctattccatcttagcaatttacgattgcat 491
             |||||| || |||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 45915 gatctacctgaactgccccggcggaagtctctactccatcttagcaatttatgattgcat 45974

                    
Query: 492   gtcctgg 498
             |||||||
Sbjct: 45975 gtcctgg 45981



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                        
Query: 508   aaagttgggacagtgtgttttggtgttgttgctagtcaagcagcgattattcttgctgg 566
             |||||||| |||||||| ||||||||||||||||| || ||||| ||||| ||||||||
Sbjct: 46600 aaagttggaacagtgtgctttggtgttgttgctagccaggcagcaattatacttgctgg 46658
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  220 bits (111), Expect = 4e-54
 Identities = 183/207 (88%)
 Strand = Plus / Plus

                                                                            
Query: 226      aggaaaaatacaatcgtggcatcagagaatgaaaatccacctttaatgcctgctatcatg 285
                |||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||
Sbjct: 16807698 aggaaaaatacaattgtagcatcagagaatgaaaatccacctttaatgcctgccataatg 16807757

                                                                            
Query: 286      actcctggtggctctctggatctggcaaccgtactcctgggaaaccgtataatcttcatt 345
                ||||||| |||  |||| ||||||||||| ||| |  |||| ||||| || |||||||||
Sbjct: 16807758 actcctgctggtgctcttgatctggcaactgtattgttggggaaccgcattatcttcatt 16807817

                                                                            
Query: 346      ggtcaatatgttaactcgcaagtggcacaacgtgtaatatcacagcttgtctcactttct 405
                ||||||||| ||||||||||||| ||||| ||||||||||||||||||||| ||||| ||
Sbjct: 16807818 ggtcaatatattaactcgcaagtagcacagcgtgtaatatcacagcttgtcacacttgct 16807877

                                           
Query: 406      gctatagatgaagagggtgatgttctg 432
                ||| | |||||||||| |||| |||||
Sbjct: 16807878 gctgttgatgaagaggctgatattctg 16807904



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 62/67 (92%)
 Strand = Plus / Plus

                                                                            
Query: 432      gatctatcttaactgccctggcggaagtctctattccatcttagcaatttacgattgcat 491
                |||||| || |||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 16808065 gatctacctgaactgccccggcggaagtctctactccatcttagcaatttatgattgcat 16808124

                       
Query: 492      gtcctgg 498
                |||||||
Sbjct: 16808125 gtcctgg 16808131



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                           
Query: 508      aaagttgggacagtgtgttttggtgttgttgctagtcaagcagcgattattcttgctgg 566
                |||||||| |||||||| ||||||||||||||||| || ||||| ||||| ||||||||
Sbjct: 16808750 aaagttggaacagtgtgctttggtgttgttgctagccaggcagcaattatacttgctgg 16808808
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  220 bits (111), Expect = 4e-54
 Identities = 183/207 (88%)
 Strand = Plus / Plus

                                                                            
Query: 226      aggaaaaatacaatcgtggcatcagagaatgaaaatccacctttaatgcctgctatcatg 285
                |||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||
Sbjct: 16801331 aggaaaaatacaattgtagcatcagagaatgaaaatccacctttaatgcctgccataatg 16801390

                                                                            
Query: 286      actcctggtggctctctggatctggcaaccgtactcctgggaaaccgtataatcttcatt 345
                ||||||| |||  |||| ||||||||||| ||| |  |||| ||||| || |||||||||
Sbjct: 16801391 actcctgctggtgctcttgatctggcaactgtattgttggggaaccgcattatcttcatt 16801450

                                                                            
Query: 346      ggtcaatatgttaactcgcaagtggcacaacgtgtaatatcacagcttgtctcactttct 405
                ||||||||| ||||||||||||| ||||| ||||||||||||||||||||| ||||| ||
Sbjct: 16801451 ggtcaatatattaactcgcaagtagcacagcgtgtaatatcacagcttgtcacacttgct 16801510

                                           
Query: 406      gctatagatgaagagggtgatgttctg 432
                ||| | |||||||||| |||| |||||
Sbjct: 16801511 gctgttgatgaagaggctgatattctg 16801537



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 62/67 (92%)
 Strand = Plus / Plus

                                                                            
Query: 432      gatctatcttaactgccctggcggaagtctctattccatcttagcaatttacgattgcat 491
                |||||| || |||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 16801698 gatctacctgaactgccccggcggaagtctctactccatcttagcaatttatgattgcat 16801757

                       
Query: 492      gtcctgg 498
                |||||||
Sbjct: 16801758 gtcctgg 16801764



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                           
Query: 508      aaagttgggacagtgtgttttggtgttgttgctagtcaagcagcgattattcttgctgg 566
                |||||||| |||||||| ||||||||||||||||| || ||||| ||||| ||||||||
Sbjct: 16802383 aaagttggaacagtgtgctttggtgttgttgctagccaggcagcaattatacttgctgg 16802441
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>gb|AF037459.1|AF037459 Fritillaria agrestis clp-like energy-dependent protease (clpP)
           mRNA, complete cds
          Length = 1100

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 135/170 (79%)
 Strand = Plus / Plus

                                                                       
Query: 331 cgtataatcttcattggtcaatatgttaactcgcaagtggcacaacgtgtaatatcacag 390
           |||||||||||||| || ||   ||| ||||| ||||| || ||||| || |||||||| 
Sbjct: 362 cgtataatcttcatcgggcagcctgtcaactcccaagtagcgcaacgagttatatcacaa 421

                                                                       
Query: 391 cttgtctcactttctgctatagatgaagagggtgatgttctgatctatcttaactgccct 450
           |||||  ||||| || |||| || || |||   ||| ||||| ||||||| ||||| |||
Sbjct: 422 cttgtgacacttgctactattgacgaggagtcagatattctggtctatctgaactgtcct 481

                                                             
Query: 451 ggcggaagtctctattccatcttagcaatttacgattgcatgtcctggat 500
           || |||||    ||||| || |||||||||||||| |||||||| |||||
Sbjct: 482 ggtggaagcacttattcaattttagcaatttacgactgcatgtcatggat 531
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>ref|XM_662010.1| Cryptosporidium hominis TU502 1,4-alpha-glucan branching enzyme
           (Chro.60429) partial mRNA
          Length = 255

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 425 atgttctgatctatcttaact 445
           |||||||||||||||||||||
Sbjct: 56  atgttctgatctatcttaact 36
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>gb|AC159548.5| Mus musculus 6 BAC RP23-77B7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 207770

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 338   tcttcattggtcaatatgtta 358
             |||||||||||||||||||||
Sbjct: 27600 tcttcattggtcaatatgtta 27620
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>emb|BX538352.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 3/4
          Length = 293050

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 425    atgttctgatctatcttaact 445
              |||||||||||||||||||||
Sbjct: 137569 atgttctgatctatcttaact 137589
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>ref|XM_627714.1| Cryptosporidium parvum Iowa II 1,4-alpha-glucan branching enzyme;
            alpha-amylase; glycogen brancing enzyme (cgd6_3750),
            partial mRNA
          Length = 1929

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 425  atgttctgatctatcttaact 445
            |||||||||||||||||||||
Sbjct: 1730 atgttctgatctatcttaact 1710
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>gb|AC153992.7| Mus musculus 6 BAC RP24-116E17 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 195972

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 338   tcttcattggtcaatatgtta 358
             |||||||||||||||||||||
Sbjct: 97066 tcttcattggtcaatatgtta 97086
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>emb|AL713977.13| Mouse DNA sequence from clone RP23-303A21 on chromosome X, complete
             sequence
          Length = 159014

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 395   tctcactttctgctatagatgaaga 419
             ||||||||||| |||||||||||||
Sbjct: 60693 tctcactttcttctatagatgaaga 60717
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>gb|AC135469.4| Mus musculus BAC clone RP24-406G8 from 13, complete sequence
          Length = 165641

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 194    tggatgagaggatacacggtc 214
              |||||||||||||||||||||
Sbjct: 109257 tggatgagaggatacacggtc 109237
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 403     tctgctatagatgaagagggtgat 426
               |||| |||||||||||||||||||
Sbjct: 1403772 tctgttatagatgaagagggtgat 1403749
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>gb|BT013042.1| Lycopersicon esculentum clone 114292R, mRNA sequence
          Length = 1201

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 407 ctatagatgaagagggtgatgttctgatctatcttaactgccctggcggaag 458
           ||||||||||| | |  ||| || |||||||||||||||| ||||| |||||
Sbjct: 447 ctatagatgaaaacgcagatattttgatctatcttaactgtcctggtggaag 498
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>ref|XM_533338.2| PREDICTED: Canis familiaris similar to DNA replication licensing
            factor MCM6 (P105MCM) (LOC476131), mRNA
          Length = 3103

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 169  ttaacatcaggtgtttctgcacgg 192
            |||||||||||||||||| |||||
Sbjct: 2396 ttaacatcaggtgtttctacacgg 2373
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>emb|Z83823.1|HS394F12 Human DNA sequence from clone RP3-394F12 on chromosome X Contains the
             5' end of the ODZ1 gene for odd odd Oz/ten-m homolog
             1(Drosophila), complete sequence
          Length = 109279

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 524   gttttggtgttgttgctagtcaag 547
             |||||| |||||||||||||||||
Sbjct: 39546 gttttgctgttgttgctagtcaag 39523
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>emb|AL450328.6| Human DNA sequence from clone RP11-193H22 on chromosome 6, complete
             sequence
          Length = 119389

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   ccacctttaatgcctgctat 281
             ||||||||||||||||||||
Sbjct: 89382 ccacctttaatgcctgctat 89401
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>emb|AL031224.1|HS336H9 Human DNA sequence from clone RP3-336H9 on chromosome 6p12.1-21.1
             Contains the 5' end of the TFAP2B gene for transcription
             factor AP-2 beta (activating enhancer-binding protein 2
             beta), the gene for a novel transcription factor AP-2 LIKE
             gene and three CpG islands, complete sequence
          Length = 131673

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   ttctgctatagatgaagagg 421
             ||||||||||||||||||||
Sbjct: 61724 ttctgctatagatgaagagg 61705
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>ref|XM_968572.1| PREDICTED: Tribolium castaneum similar to CG18028-PA.3 (LOC662480),
            mRNA
          Length = 2508

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 488  gcatgtcctggatcacaccg 507
            ||||||||||||||||||||
Sbjct: 1666 gcatgtcctggatcacaccg 1647
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>dbj|AP001625.1| Homo sapiens genomic DNA, chromosome 21, clone:KB907F12, MX1-D21S171
             region, complete sequence
          Length = 130626

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 422   gtgatgttctgatctatctt 441
             ||||||||||||||||||||
Sbjct: 46579 gtgatgttctgatctatctt 46560
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>dbj|AK124103.1| Homo sapiens cDNA FLJ42109 fis, clone TESOP2008563
          Length = 3153

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 422  gtgatgttctgatctatctt 441
            ||||||||||||||||||||
Sbjct: 1252 gtgatgttctgatctatctt 1271
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>gb|U18916.2|SCE9781 Saccharomyces cerevisiae chromosome V cosmids 9781, 8198,  9115, 9981,
             and lambda clones 3955 and 6052
          Length = 68301

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 520   gtgtgttttggtgttgttgc 539
             ||||||||||||||||||||
Sbjct: 26249 gtgtgttttggtgttgttgc 26230
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>gb|AC024900.20| Homo sapiens 12 BAC RP11-549E9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 171970

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 410    tagatgaagagggtgatgtt 429
              ||||||||||||||||||||
Sbjct: 135994 tagatgaagagggtgatgtt 136013
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>gb|AY766186.1| Uncultured murine large bowel bacterium BAC 54B, complete sequence
          Length = 39918

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    cacgctcaggcacctccggc 43
             ||||||||||||||||||||
Sbjct: 23052 cacgctcaggcacctccggc 23033
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>gb|AC104695.2| Homo sapiens BAC clone RP11-373D23 from 2, complete sequence
          Length = 157665

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   gaatgaaaatccacctttaa 271
             ||||||||||||||||||||
Sbjct: 78493 gaatgaaaatccacctttaa 78474
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>dbj|BS000228.1| Pan troglodytes chromosome 22 clone:RP43-139F08, map 22, complete
              sequences
          Length = 160535

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 422    gtgatgttctgatctatctt 441
              ||||||||||||||||||||
Sbjct: 130614 gtgatgttctgatctatctt 130595
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>emb|BX647822.1|HSM807968 Homo sapiens mRNA; cDNA DKFZp686E0486 (from clone DKFZp686E0486)
          Length = 5094

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 252  gaatgaaaatccacctttaa 271
            ||||||||||||||||||||
Sbjct: 5094 gaatgaaaatccacctttaa 5075
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>emb|BX255891.5| Zebrafish DNA sequence from clone DKEY-263P20 in linkage group 20,
             complete sequence
          Length = 104855

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 215   aatcttatctgaggaaaaatacaa 238
             ||||||| ||||||||||||||||
Sbjct: 84610 aatcttaactgaggaaaaatacaa 84587
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>dbj|AP001747.1| Homo sapiens genomic DNA, chromosome 21q, section 91/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 422   gtgatgttctgatctatctt 441
             ||||||||||||||||||||
Sbjct: 22732 gtgatgttctgatctatctt 22713
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>gb|DQ331727.1| Synthetic construct Saccharomyces cerevisiae clone FLH202262.01X
           AVT6 gene, complete sequence
          Length = 1347

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 520 gtgtgttttggtgttgttgc 539
           ||||||||||||||||||||
Sbjct: 480 gtgtgttttggtgttgttgc 499
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>gb|AC171205.1| Mus musculus BAC clone RP23-441H20 from chromosome 16, complete
             sequence
          Length = 212822

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   tctggcaaccgtactcctgg 325
             ||||||||||||||||||||
Sbjct: 53568 tctggcaaccgtactcctgg 53587
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>gb|L38581.1|TOMCLPP Lycopersicon esculentum clp-like energy-dependent protease mRNA,
           complete cds
          Length = 1218

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 407 ctatagatgaagagggtgatgttctgatctatcttaactgccctggcggaag 458
           ||||||||||| | |  ||| || |||||||||||||||| ||||| |||||
Sbjct: 474 ctatagatgaaaacgcagatattttgatctatcttaactgtcctggtggaag 525


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,241,345
Number of Sequences: 3902068
Number of extensions: 4241345
Number of successful extensions: 78666
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78539
Number of HSP's gapped (non-prelim): 126
length of query: 568
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 545
effective length of database: 17,143,297,704
effective search space: 9343097248680
effective search space used: 9343097248680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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