ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart20h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NFI_METKA (Q8X260) Endonuclease V (EC 3.1.21.7) (Deoxyinosine 3'... 32 1.9
2GPR56_GORGO (Q50DM6) G-protein coupled receptor 56 precursor 31 3.2
3CPXU_RHISN (P55540) Cytochrome P450 BJ-4 homolog (EC 1.14.14.-) 30 5.5
4NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 pr... 25 6.3
5DNMBP_MOUSE (Q6TXD4) Dynamin-binding protein (Scaffold protein T... 30 7.2
6KLOT_HUMAN (Q9UEF7) Klotho precursor (EC 3.2.1.31) [Contains: Kl... 30 7.2
7KLOT_MACFA (Q8WP17) Klotho precursor (EC 3.2.1.31) [Contains: Kl... 30 7.2
8SPT6H_CAEBR (Q93148) Suppressor of Ty 6 homolog (Abnormal embryo... 30 7.2
9GPR56_PONPY (Q50DM5) G-protein coupled receptor 56 precursor 30 7.2
10RTXE_DROME (Q9NBX4) Probable RNA-directed DNA polymerase from tr... 29 9.4

>NFI_METKA (Q8X260) Endonuclease V (EC 3.1.21.7) (Deoxyinosine 3'endonuclease)|
           (Deoxyribonuclease V) (DNase V)
          Length = 229

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 607 PQRAQTENGALHVLVVGGWVVRRDVEQRVVLEVLPHRCTGASCIVTTLRIIR 452
           P R       +H   V G++VR D E R V+    HRC     +  TLR++R
Sbjct: 145 PSRIGDTTPLVHRGEVVGYLVRTDAEARPVVVSPGHRCNLEDAVRWTLRLVR 196



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>GPR56_GORGO (Q50DM6) G-protein coupled receptor 56 precursor|
          Length = 687

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
 Frame = +2

Query: 167 YWNRTAGADHFFVVPHDF--------GACFHYQEEKAIERGILPLLRRATLVQTFGQKDH 322
           YWNR AG  H     HDF          CF +QEE   +    PLL  AT V ++    +
Sbjct: 93  YWNRHAGRLHLLYGKHDFLLSDKASSLLCFQHQEESLAQGP--PLL--ATSVTSWWSPQN 148

Query: 323 VCL-KEGSINIPPYAPP 370
           V L    S     ++PP
Sbjct: 149 VSLPSAASFTFSFHSPP 165



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>CPXU_RHISN (P55540) Cytochrome P450 BJ-4 homolog (EC 1.14.14.-)|
          Length = 447

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +2

Query: 119 PRIMRSAVQFISSHWPYWNRTAGADHFF--VVPHDFGACFHYQEEKAIERGILPLLRRAT 292
           PR++R A + + SH  +W     A H    V PH F    H     A+   I P L   T
Sbjct: 39  PRLLRRAERTLGSH--FWLDFGPAGHLMTCVDPHAFALLRHKDVSSALIEEIAPELLGGT 96

Query: 293 LVQTFG 310
           LV   G
Sbjct: 97  LVAQDG 102



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>NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 precursor (Notch|
           4) (hNotch4) [Contains: Notch 4 extracellular
           truncation; Notch 4 intracellular domain]
          Length = 2003

 Score = 24.6 bits (52), Expect(2) = 6.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 478 CKRRPCIGVGELQEQPSVRH 537
           C+  PC   G+ Q+QP   H
Sbjct: 555 CRSSPCANGGQCQDQPGAFH 574



 Score = 23.5 bits (49), Expect(2) = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 569 DMQRAIFCLCPLGW 610
           D+  A FCLCP G+
Sbjct: 606 DLPGAFFCLCPSGF 619



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>DNMBP_MOUSE (Q6TXD4) Dynamin-binding protein (Scaffold protein Tuba)|
          Length = 1580

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = +2

Query: 275 LLRRATLVQTFGQKDHVCLKEGSINIPPYAPPQKMKTHLVPPETPRSIFVYFRGLFYDTA 454
           ++RR +++  + +KD V  +  S ++P  A P++ KT   PP  PR+       L  D +
Sbjct: 572 IVRRFSIMDFYSEKDIV--RGSSNSLPSQAFPERRKTLRPPPPRPRTPTPISSHLLVDQS 629

Query: 455 NDPEGGYYARGAR 493
             P      R +R
Sbjct: 630 PKPVPTLVVRPSR 642



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>KLOT_HUMAN (Q9UEF7) Klotho precursor (EC 3.2.1.31) [Contains: Klotho peptide]|
          Length = 1012

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
 Frame = +2

Query: 428 FRGLFYD--------TANDPEGGYYARGARASVWENFKNNPL 529
           F+G F D         A   EGG+   G  AS+W+ F ++PL
Sbjct: 57  FQGTFPDGFLWAVGSAAYQTEGGWQQHGKGASIWDTFTHHPL 98



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>KLOT_MACFA (Q8WP17) Klotho precursor (EC 3.2.1.31) [Contains: Klotho peptide]|
          Length = 1014

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
 Frame = +2

Query: 428 FRGLFYD--------TANDPEGGYYARGARASVWENFKNNPL 529
           F+G F D         A   EGG+   G  AS+W+ F ++PL
Sbjct: 59  FQGTFPDGFLWAVGSAAYQTEGGWQQHGKGASIWDTFTHHPL 100



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>SPT6H_CAEBR (Q93148) Suppressor of Ty 6 homolog (Abnormal embryogenesis protein|
           5)
          Length = 1521

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 257 QSPFLPDNGSMPQSHAARRRNDQHLLSGS 171
           +  F+ D+G  P+ H  R R D+H+  G+
Sbjct: 169 EDDFIEDDGDAPRRHRKRHRGDEHIPEGA 197



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>GPR56_PONPY (Q50DM5) G-protein coupled receptor 56 precursor|
          Length = 687

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
 Frame = +2

Query: 167 YWNRTAGADHFFVVPHDF--------GACFHYQEEKAIERGILPLLRRATLVQTFGQKDH 322
           YWNR AG  H     HDF          CF +QEE   +    PLL  AT V ++    +
Sbjct: 93  YWNRHAGRLHLLYGKHDFLLSDKASSLLCFQHQEESLAQGP--PLL--ATSVTSWWSPQN 148

Query: 323 VCLKEGSINIPPYAPPQKMKTH 388
           + L   +     +  P     H
Sbjct: 149 ISLPSAASFTFSFHSPSHTAAH 170



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>RTXE_DROME (Q9NBX4) Probable RNA-directed DNA polymerase from transposon|
           X-element (EC 2.7.7.49) (Reverse transcriptase)
          Length = 908

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +2

Query: 380 KTHLVPPETPRSIFVYFRGLFYDTANDPEGGYYARGARASVWENFKNNPLFDIST 544
           +TH    ETP+       G    TANDP GG    GA   +  +  + PL  I+T
Sbjct: 37  ETHCKGAETPKLF-----GFVAYTANDPSGGNAKGGAAILIKNSLAHFPLTPIAT 86


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,896,365
Number of Sequences: 219361
Number of extensions: 2400753
Number of successful extensions: 6058
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6057
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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