ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart20g07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY559195.1| Zea mays isolate bti00209 Ac insertion site Length = 440 Score = 151 bits (76), Expect = 3e-33 Identities = 161/188 (85%), Gaps = 1/188 (0%) Strand = Plus / Minus Query: 149 ccgctcaccttctt-cgacgtgccctggatcttcaccggccccgtggagcgcgtcttctt 207 |||||||||||||| ||||||||| ||| ||||||| ||||||||||||||||||||||| Sbjct: 204 ccgctcaccttctttcgacgtgccgtggctcttcacgggccccgtggagcgcgtcttctt 145 Query: 208 ctacccgtacccgcacccggccgagcaattcagggccgccctcctgccccgcctcgtctc 267 |||||| ||| ||||| |||| || || ||| ||| ||||||||| ||||||||| Sbjct: 144 ctacccctacgcgcacacggcggaccacttcgccgcccacctcctgccgtccctcgtctc 85 Query: 268 ctcactctccgccgcgctgggcaagttctaccccctcctcggccgcgtccggccctgccc 327 ||| ||||||||| ||||| || ||||||||| || |||||||||||||| || ||||| Sbjct: 84 ctccctctccgccacgctgcgcgcgttctacccgctgctcggccgcgtccgcccgtgccc 25 Query: 328 ggacggcg 335 |||||||| Sbjct: 24 ggacggcg 17
>ref|XM_507055.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1202_E07.32 mRNA Length = 1810 Score = 105 bits (53), Expect = 2e-19 Identities = 143/173 (82%) Strand = Plus / Plus Query: 149 ccgctcaccttcttcgacgtgccctggatcttcaccggccccgtggagcgcgtcttcttc 208 ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| || Sbjct: 246 ccgctgaccttcttcgacgtgccgtggatcttcaccggcccggtggagcgcgtcttcctc 305 Query: 209 tacccgtacccgcacccggccgagcaattcagggccgccctcctgccccgcctcgtctcc 268 ||| | ||||||||| | | ||| || || ||| |||||| ||| ||||| |||| Sbjct: 306 tacacctacccgcacgccgtcgaacacctcgccgcccacctcctcccctccctcgcctcc 365 Query: 269 tcactctccgccgcgctgggcaagttctaccccctcctcggccgcgtccggcc 321 || ||||||||||||||| | |||||||| || || |||||||||||||| Sbjct: 366 tcgctctccgccgcgctgcaccgcttctacccgcttcttggccgcgtccggcc 418 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 385 cgtcgagctcactgtcgccgagagcgaggacgacttcgacgggctctccggcg 437 |||||||||||| ||||||||||||| ||||||||||| | |||| |||||| Sbjct: 482 cgtcgagctcaccgtcgccgagagcggcgacgacttcgaggagctcgccggcg 534 Score = 42.1 bits (21), Expect = 2.0 Identities = 48/57 (84%) Strand = Plus / Plus Query: 517 gctcgcggccgtccaggtgaccgtgttcgccgggcgcggggtcgccgtcggcgtgtc 573 ||||||||| || |||||||| || ||| ||||| ||| |||||||||||||||| Sbjct: 608 gctcgcggcggtgcaggtgacggttttccccgggaaggggctcgccgtcggcgtgtc 664
>ref|XM_468435.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1656 Score = 105 bits (53), Expect = 2e-19 Identities = 143/173 (82%) Strand = Plus / Plus Query: 149 ccgctcaccttcttcgacgtgccctggatcttcaccggccccgtggagcgcgtcttcttc 208 ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| || Sbjct: 88 ccgctgaccttcttcgacgtgccgtggatcttcaccggcccggtggagcgcgtcttcctc 147 Query: 209 tacccgtacccgcacccggccgagcaattcagggccgccctcctgccccgcctcgtctcc 268 ||| | ||||||||| | | ||| || || ||| |||||| ||| ||||| |||| Sbjct: 148 tacacctacccgcacgccgtcgaacacctcgccgcccacctcctcccctccctcgcctcc 207 Query: 269 tcactctccgccgcgctgggcaagttctaccccctcctcggccgcgtccggcc 321 || ||||||||||||||| | |||||||| || || |||||||||||||| Sbjct: 208 tcgctctccgccgcgctgcaccgcttctacccgcttcttggccgcgtccggcc 260 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 385 cgtcgagctcactgtcgccgagagcgaggacgacttcgacgggctctccggcg 437 |||||||||||| ||||||||||||| ||||||||||| | |||| |||||| Sbjct: 324 cgtcgagctcaccgtcgccgagagcggcgacgacttcgaggagctcgccggcg 376 Score = 42.1 bits (21), Expect = 2.0 Identities = 48/57 (84%) Strand = Plus / Plus Query: 517 gctcgcggccgtccaggtgaccgtgttcgccgggcgcggggtcgccgtcggcgtgtc 573 ||||||||| || |||||||| || ||| ||||| ||| |||||||||||||||| Sbjct: 450 gctcgcggcggtgcaggtgacggttttccccgggaaggggctcgccgtcggcgtgtc 506
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 105 bits (53), Expect = 2e-19 Identities = 143/173 (82%) Strand = Plus / Minus Query: 149 ccgctcaccttcttcgacgtgccctggatcttcaccggccccgtggagcgcgtcttcttc 208 ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| || Sbjct: 35242118 ccgctgaccttcttcgacgtgccgtggatcttcaccggcccggtggagcgcgtcttcctc 35242059 Query: 209 tacccgtacccgcacccggccgagcaattcagggccgccctcctgccccgcctcgtctcc 268 ||| | ||||||||| | | ||| || || ||| |||||| ||| ||||| |||| Sbjct: 35242058 tacacctacccgcacgccgtcgaacacctcgccgcccacctcctcccctccctcgcctcc 35241999 Query: 269 tcactctccgccgcgctgggcaagttctaccccctcctcggccgcgtccggcc 321 || ||||||||||||||| | |||||||| || || |||||||||||||| Sbjct: 35241998 tcgctctccgccgcgctgcaccgcttctacccgcttcttggccgcgtccggcc 35241946 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 385 cgtcgagctcactgtcgccgagagcgaggacgacttcgacgggctctccggcg 437 |||||||||||| ||||||||||||| ||||||||||| | |||| |||||| Sbjct: 35241882 cgtcgagctcaccgtcgccgagagcggcgacgacttcgaggagctcgccggcg 35241830 Score = 42.1 bits (21), Expect = 2.0 Identities = 48/57 (84%) Strand = Plus / Minus Query: 517 gctcgcggccgtccaggtgaccgtgttcgccgggcgcggggtcgccgtcggcgtgtc 573 ||||||||| || |||||||| || ||| ||||| ||| |||||||||||||||| Sbjct: 35241756 gctcgcggcggtgcaggtgacggttttccccgggaaggggctcgccgtcggcgtgtc 35241700 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 cccgtggagcgcgtcttcttctacc 212 ||||| ||||||||||||||||||| Sbjct: 16934995 cccgtcgagcgcgtcttcttctacc 16935019 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 cccgtggagcgcgtcttcttctacc 212 ||||| ||||||||||||||||||| Sbjct: 16850052 cccgtcgagcgcgtcttcttctacc 16850076 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 cccgtggagcgcgtcttcttctacc 212 ||||| ||||||||||||||||||| Sbjct: 16826304 cccgtcgagcgcgtcttcttctacc 16826328
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 105 bits (53), Expect = 2e-19 Identities = 143/173 (82%) Strand = Plus / Minus Query: 149 ccgctcaccttcttcgacgtgccctggatcttcaccggccccgtggagcgcgtcttcttc 208 ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| || Sbjct: 54168 ccgctgaccttcttcgacgtgccgtggatcttcaccggcccggtggagcgcgtcttcctc 54109 Query: 209 tacccgtacccgcacccggccgagcaattcagggccgccctcctgccccgcctcgtctcc 268 ||| | ||||||||| | | ||| || || ||| |||||| ||| ||||| |||| Sbjct: 54108 tacacctacccgcacgccgtcgaacacctcgccgcccacctcctcccctccctcgcctcc 54049 Query: 269 tcactctccgccgcgctgggcaagttctaccccctcctcggccgcgtccggcc 321 || ||||||||||||||| | |||||||| || || |||||||||||||| Sbjct: 54048 tcgctctccgccgcgctgcaccgcttctacccgcttcttggccgcgtccggcc 53996 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 385 cgtcgagctcactgtcgccgagagcgaggacgacttcgacgggctctccggcg 437 |||||||||||| ||||||||||||| ||||||||||| | |||| |||||| Sbjct: 53932 cgtcgagctcaccgtcgccgagagcggcgacgacttcgaggagctcgccggcg 53880 Score = 42.1 bits (21), Expect = 2.0 Identities = 48/57 (84%) Strand = Plus / Minus Query: 517 gctcgcggccgtccaggtgaccgtgttcgccgggcgcggggtcgccgtcggcgtgtc 573 ||||||||| || |||||||| || ||| ||||| ||| |||||||||||||||| Sbjct: 53806 gctcgcggcggtgcaggtgacggttttccccgggaaggggctcgccgtcggcgtgtc 53750
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 105 bits (53), Expect = 2e-19 Identities = 143/173 (82%) Strand = Plus / Minus Query: 149 ccgctcaccttcttcgacgtgccctggatcttcaccggccccgtggagcgcgtcttcttc 208 ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| || Sbjct: 137474 ccgctgaccttcttcgacgtgccgtggatcttcaccggcccggtggagcgcgtcttcctc 137415 Query: 209 tacccgtacccgcacccggccgagcaattcagggccgccctcctgccccgcctcgtctcc 268 ||| | ||||||||| | | ||| || || ||| |||||| ||| ||||| |||| Sbjct: 137414 tacacctacccgcacgccgtcgaacacctcgccgcccacctcctcccctccctcgcctcc 137355 Query: 269 tcactctccgccgcgctgggcaagttctaccccctcctcggccgcgtccggcc 321 || ||||||||||||||| | |||||||| || || |||||||||||||| Sbjct: 137354 tcgctctccgccgcgctgcaccgcttctacccgcttcttggccgcgtccggcc 137302 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 385 cgtcgagctcactgtcgccgagagcgaggacgacttcgacgggctctccggcg 437 |||||||||||| ||||||||||||| ||||||||||| | |||| |||||| Sbjct: 137238 cgtcgagctcaccgtcgccgagagcggcgacgacttcgaggagctcgccggcg 137186 Score = 42.1 bits (21), Expect = 2.0 Identities = 48/57 (84%) Strand = Plus / Minus Query: 517 gctcgcggccgtccaggtgaccgtgttcgccgggcgcggggtcgccgtcggcgtgtc 573 ||||||||| || |||||||| || ||| ||||| ||| |||||||||||||||| Sbjct: 137112 gctcgcggcggtgcaggtgacggttttccccgggaaggggctcgccgtcggcgtgtc 137056
>dbj|AK100771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120A02, full insert sequence Length = 1810 Score = 105 bits (53), Expect = 2e-19 Identities = 143/173 (82%) Strand = Plus / Plus Query: 149 ccgctcaccttcttcgacgtgccctggatcttcaccggccccgtggagcgcgtcttcttc 208 ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| || Sbjct: 246 ccgctgaccttcttcgacgtgccgtggatcttcaccggcccggtggagcgcgtcttcctc 305 Query: 209 tacccgtacccgcacccggccgagcaattcagggccgccctcctgccccgcctcgtctcc 268 ||| | ||||||||| | | ||| || || ||| |||||| ||| ||||| |||| Sbjct: 306 tacacctacccgcacgccgtcgaacacctcgccgcccacctcctcccctccctcgcctcc 365 Query: 269 tcactctccgccgcgctgggcaagttctaccccctcctcggccgcgtccggcc 321 || ||||||||||||||| | |||||||| || || |||||||||||||| Sbjct: 366 tcgctctccgccgcgctgcaccgcttctacccgcttcttggccgcgtccggcc 418 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 385 cgtcgagctcactgtcgccgagagcgaggacgacttcgacgggctctccggcg 437 |||||||||||| ||||||||||||| ||||||||||| | |||| |||||| Sbjct: 482 cgtcgagctcaccgtcgccgagagcggcgacgacttcgaggagctcgccggcg 534 Score = 42.1 bits (21), Expect = 2.0 Identities = 48/57 (84%) Strand = Plus / Plus Query: 517 gctcgcggccgtccaggtgaccgtgttcgccgggcgcggggtcgccgtcggcgtgtc 573 ||||||||| || |||||||| || ||| ||||| ||| |||||||||||||||| Sbjct: 608 gctcgcggcggtgcaggtgacggttttccccgggaaggggctcgccgtcggcgtgtc 664
>dbj|AK060511.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D06, full insert sequence Length = 1656 Score = 105 bits (53), Expect = 2e-19 Identities = 143/173 (82%) Strand = Plus / Plus Query: 149 ccgctcaccttcttcgacgtgccctggatcttcaccggccccgtggagcgcgtcttcttc 208 ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| || Sbjct: 88 ccgctgaccttcttcgacgtgccgtggatcttcaccggcccggtggagcgcgtcttcctc 147 Query: 209 tacccgtacccgcacccggccgagcaattcagggccgccctcctgccccgcctcgtctcc 268 ||| | ||||||||| | | ||| || || ||| |||||| ||| ||||| |||| Sbjct: 148 tacacctacccgcacgccgtcgaacacctcgccgcccacctcctcccctccctcgcctcc 207 Query: 269 tcactctccgccgcgctgggcaagttctaccccctcctcggccgcgtccggcc 321 || ||||||||||||||| | |||||||| || || |||||||||||||| Sbjct: 208 tcgctctccgccgcgctgcaccgcttctacccgcttcttggccgcgtccggcc 260 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 385 cgtcgagctcactgtcgccgagagcgaggacgacttcgacgggctctccggcg 437 |||||||||||| ||||||||||||| ||||||||||| | |||| |||||| Sbjct: 324 cgtcgagctcaccgtcgccgagagcggcgacgacttcgaggagctcgccggcg 376 Score = 42.1 bits (21), Expect = 2.0 Identities = 48/57 (84%) Strand = Plus / Plus Query: 517 gctcgcggccgtccaggtgaccgtgttcgccgggcgcggggtcgccgtcggcgtgtc 573 ||||||||| || |||||||| || ||| ||||| ||| |||||||||||||||| Sbjct: 450 gctcgcggcggtgcaggtgacggttttccccgggaaggggctcgccgtcggcgtgtc 506
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 508 cgggttcgcgctcgcggccgtccaggtgaccg 539 |||||||||| |||||| |||||||||||||| Sbjct: 90942 cgggttcgcggtcgcggacgtccaggtgaccg 90911
>ref|XM_473803.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1401 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 187 ccccgtggagcgcgtcttcttctacc 212 |||||| ||||||||||||||||||| Sbjct: 138 ccccgtcgagcgcgtcttcttctacc 163
>gb|AC113078.17| Mus musculus chromosome 18, clone RP23-287G21, complete sequence Length = 195627 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 6 tcccatctttcctctcccccctccac 31 ||||||||| |||||||||||||||| Sbjct: 144631 tcccatcttccctctcccccctccac 144656
>gb|AC163620.4| Mus musculus BAC clone RP23-117D22 from chromosome 18, complete sequence Length = 201850 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 6 tcccatctttcctctcccccctccac 31 ||||||||| |||||||||||||||| Sbjct: 18080 tcccatcttccctctcccccctccac 18105
>ref|XM_811060.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510885.80) partial mRNA Length = 2133 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 362 ggaggaggggccggtggtggcg 383 |||||||||||||||||||||| Sbjct: 1096 ggaggaggggccggtggtggcg 1117
>ref|XM_816852.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506529.170) partial mRNA Length = 1920 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 362 ggaggaggggccggtggtggcg 383 |||||||||||||||||||||| Sbjct: 883 ggaggaggggccggtggtggcg 904
>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08, complete sequence Length = 129037 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 187 ccccgtggagcgcgtcttcttctacc 212 |||||| ||||||||||||||||||| Sbjct: 119951 ccccgtcgagcgcgtcttcttctacc 119926
>emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035M09, complete sequence Length = 152732 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 187 ccccgtggagcgcgtcttcttctacc 212 |||||| ||||||||||||||||||| Sbjct: 47974 ccccgtcgagcgcgtcttcttctacc 47949
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 187 ccccgtggagcgcgtcttcttctacc 212 |||||| ||||||||||||||||||| Sbjct: 30644243 ccccgtcgagcgcgtcttcttctacc 30644218
>dbj|AK105836.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-E12, full insert sequence Length = 1511 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 187 ccccgtggagcgcgtcttcttctacc 212 |||||| ||||||||||||||||||| Sbjct: 148 ccccgtcgagcgcgtcttcttctacc 173
>dbj|AK073495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044F12, full insert sequence Length = 1526 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 187 ccccgtggagcgcgtcttcttctacc 212 |||||| ||||||||||||||||||| Sbjct: 163 ccccgtcgagcgcgtcttcttctacc 188
>ref|XM_465709.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1026 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 cccgtggagcgcgtcttcttctacc 212 ||||| ||||||||||||||||||| Sbjct: 148 cccgtcgagcgcgtcttcttctacc 172
>ref|XM_465703.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1404 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 cccgtggagcgcgtcttcttctacc 212 ||||| ||||||||||||||||||| Sbjct: 148 cccgtcgagcgcgtcttcttctacc 172
>ref|XM_465699.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1473 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 cccgtggagcgcgtcttcttctacc 212 ||||| ||||||||||||||||||| Sbjct: 148 cccgtcgagcgcgtcttcttctacc 172
>gb|AC109329.8| Homo sapiens chromosome 8, clone CTD-3107M8, complete sequence Length = 215644 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 ccccgcgggaggaggggccgg 375 ||||||||||||||||||||| Sbjct: 149421 ccccgcgggaggaggggccgg 149401
>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16 Length = 349442 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 417 acttcgacgggctctccggcg 437 ||||||||||||||||||||| Sbjct: 1100 acttcgacgggctctccggcg 1120
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 acttcgacgggctctccggcg 437 ||||||||||||||||||||| Sbjct: 235245 acttcgacgggctctccggcg 235225
>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12 Length = 343243 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 acttcgacgggctctccggcg 437 ||||||||||||||||||||| Sbjct: 260960 acttcgacgggctctccggcg 260940
>gb|AC073175.4| Homo sapiens chromosome 05 clone RP11-319P13, complete sequence Length = 173707 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 agctcccatctttcctctccc 23 ||||||||||||||||||||| Sbjct: 169572 agctcccatctttcctctccc 169552
>gb|AC151895.4| Mus musculus BAC clone RP24-323A22 from chromosome 10, complete sequence Length = 224442 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 catctttcctctcccccctcc 29 ||||||||||||||||||||| Sbjct: 66801 catctttcctctcccccctcc 66821
>gb|AC008796.6|AC008796 Homo sapiens chromosome 5 clone CTD-2055E10, complete sequence Length = 23231 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 agctcccatctttcctctccc 23 ||||||||||||||||||||| Sbjct: 10086 agctcccatctttcctctccc 10106
>gb|AC123530.4| Mus musculus BAC clone RP24-194D2 from chromosome 10, complete sequence Length = 164420 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 catctttcctctcccccctcc 29 ||||||||||||||||||||| Sbjct: 144319 catctttcctctcccccctcc 144339
>dbj|AP004132.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1089_A02 Length = 117908 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 cccgtggagcgcgtcttcttctacc 212 ||||| ||||||||||||||||||| Sbjct: 77100 cccgtcgagcgcgtcttcttctacc 77124
>dbj|AP004998.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036H07 Length = 149797 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 cccgtggagcgcgtcttcttctacc 212 ||||| ||||||||||||||||||| Sbjct: 136052 cccgtcgagcgcgtcttcttctacc 136076 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 cccgtggagcgcgtcttcttctacc 212 ||||| ||||||||||||||||||| Sbjct: 51109 cccgtcgagcgcgtcttcttctacc 51133 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 cccgtggagcgcgtcttcttctacc 212 ||||| ||||||||||||||||||| Sbjct: 27361 cccgtcgagcgcgtcttcttctacc 27385
>dbj|AP004302.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1122_H01 Length = 103030 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 cccgtggagcgcgtcttcttctacc 212 ||||| ||||||||||||||||||| Sbjct: 98294 cccgtcgagcgcgtcttcttctacc 98318 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 cccgtggagcgcgtcttcttctacc 212 ||||| ||||||||||||||||||| Sbjct: 74546 cccgtcgagcgcgtcttcttctacc 74570
>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence Length = 2906179 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 ccgtccaggtgaccgtgttcg 545 ||||||||||||||||||||| Sbjct: 520664 ccgtccaggtgaccgtgttcg 520684
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 501 aggacggcgggttcgcgctcgcggc 525 |||||||||| |||||||||||||| Sbjct: 1235525 aggacggcggcttcgcgctcgcggc 1235549
>gb|AC121147.8| Mus musculus chromosome 3, clone RP24-369O15, complete sequence Length = 178352 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 5 ctcccatctttcctctcccccctccacc 32 |||||| |||| |||||||||||||||| Sbjct: 151937 ctcccacctttgctctcccccctccacc 151964
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 gagcgaggacgacttcgacg 425 |||||||||||||||||||| Sbjct: 2737101 gagcgaggacgacttcgacg 2737082
>gb|AC138196.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032M21 map C83B, complete sequence Length = 48636 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 gcgggaggaggggccggtgg 378 |||||||||||||||||||| Sbjct: 46034 gcgggaggaggggccggtgg 46053
>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence Length = 123477 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 gcgggaggaggggccggtgg 378 |||||||||||||||||||| Sbjct: 110767 gcgggaggaggggccggtgg 110748
>gb|AC116776.12| Mus musculus chromosome 3, clone RP24-472H5, complete sequence Length = 170076 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 5 ctcccatctttcctctcccccctccacc 32 |||||| |||| |||||||||||||||| Sbjct: 107391 ctcccacctttgctctcccccctccacc 107364
>gb|AC111122.13| Mus musculus chromosome 7, clone RP23-230L8, complete sequence Length = 175772 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 tcctctcccccctccaccaa 34 |||||||||||||||||||| Sbjct: 67658 tcctctcccccctccaccaa 67639
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gtgttcgccgggcgcggggt 558 |||||||||||||||||||| Sbjct: 2559979 gtgttcgccgggcgcggggt 2559998
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 gccgccgagaagagcagggg 55 |||||||||||||||||||| Sbjct: 1259126 gccgccgagaagagcagggg 1259145
>gb|BC056317.1| Danio rerio myeloid ecotropic viral integration site 4.1a, mRNA (cDNA clone MGC:65739 IMAGE:6799906), complete cds Length = 2178 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 acccgtacccgcacccggcc 229 |||||||||||||||||||| Sbjct: 461 acccgtacccgcacccggcc 480
>ref|XM_874914.1| PREDICTED: Bos taurus similar to protein inhibitor of activated STAT, 3, transcript variant 5 (LOC535312), mRNA Length = 1899 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 tcccatctttcctctccccc 25 |||||||||||||||||||| Sbjct: 156 tcccatctttcctctccccc 175
>ref|XM_874831.1| PREDICTED: Bos taurus similar to protein inhibitor of activated STAT, 3, transcript variant 4 (LOC535312), mRNA Length = 1932 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 tcccatctttcctctccccc 25 |||||||||||||||||||| Sbjct: 269 tcccatctttcctctccccc 288
>gb|BC065977.1| Danio rerio myeloid ecotropic viral integration site 4.1a, mRNA (cDNA clone MGC:76814 IMAGE:6972035), complete cds Length = 2176 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 acccgtacccgcacccggcc 229 |||||||||||||||||||| Sbjct: 444 acccgtacccgcacccggcc 463
>gb|AC163402.5| Mus musculus chromosome 7, clone RP23-290H21, complete sequence Length = 240582 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tctttcctctcccccctcca 30 |||||||||||||||||||| Sbjct: 14384 tctttcctctcccccctcca 14365
>emb|Z81002.2|HSN53A9 Human DNA sequence from clone LL22NC03-53A9 on chromosome 22 Contains an EST and GSSs, complete sequence Length = 31756 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cccatctttcctctcccccc 26 |||||||||||||||||||| Sbjct: 7536 cccatctttcctctcccccc 7517
>emb|BX547996.10| Zebrafish DNA sequence from clone CH211-212H16 in linkage group 1, complete sequence Length = 213398 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 acccgtacccgcacccggcc 229 |||||||||||||||||||| Sbjct: 191124 acccgtacccgcacccggcc 191143
>gb|AF376049.1|AF376049 Danio rerio transcription factor Meis4.1a (meis4.1a) mRNA, complete cds Length = 1778 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 acccgtacccgcacccggcc 229 |||||||||||||||||||| Sbjct: 340 acccgtacccgcacccggcc 359
>gb|AC115080.13| Mus musculus chromosome 7, clone RP24-464M7, complete sequence Length = 158221 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tctttcctctcccccctcca 30 |||||||||||||||||||| Sbjct: 27175 tctttcctctcccccctcca 27194
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 gcgggaggaggggccggtgg 378 |||||||||||||||||||| Sbjct: 2511637 gcgggaggaggggccggtgg 2511656
>ref|NM_131897.2| Danio rerio myeloid ecotropic viral integration site 4.1a (meis4.1a), mRNA Length = 2178 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 acccgtacccgcacccggcc 229 |||||||||||||||||||| Sbjct: 461 acccgtacccgcacccggcc 480
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 tcttcaccggccccgtggag 196 |||||||||||||||||||| Sbjct: 1773814 tcttcaccggccccgtggag 1773795
>gb|AE005125.1| Halobacterium sp. NRC-1 section 156 of 170 of the complete genome Length = 14991 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 547 cgggcgcggggtcgccgtcggcgt 570 |||||||||| ||||||||||||| Sbjct: 8605 cgggcgcgggctcgccgtcggcgt 8582
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 406 gagcgaggacgacttcgacgggct 429 |||||||||||||| ||||||||| Sbjct: 532026 gagcgaggacgactacgacgggct 532049
>gb|AF134589.1|AF134589 Streptomyces sp. D7 vanillic acid decarboxylation gene cluster, complete sequence Length = 2961 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 148 gccgctcaccttcttcgacgtgccctgg 175 |||||||||| |||||||||||||||| Sbjct: 1415 gccgctcaccggcttcgacgtgccctgg 1442
>gb|AY558875.1| Burkholderia cenocepacia capsular polysaccharide gene cluster, partial sequence Length = 27056 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 cgccgtcggcgtgtcgatac 578 |||||||||||||||||||| Sbjct: 5641 cgccgtcggcgtgtcgatac 5660
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 cccggacggcgccgggtacg 344 |||||||||||||||||||| Sbjct: 468248 cccggacggcgccgggtacg 468229
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 gcgggaggaggggccggtgg 378 |||||||||||||||||||| Sbjct: 2520668 gcgggaggaggggccggtgg 2520687
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 tcttcaccggccccgtggag 196 |||||||||||||||||||| Sbjct: 1450520 tcttcaccggccccgtggag 1450501
>emb|BX284658.1| Human DNA sequence from clone RP1-100G10 on chromosome 22q13.31-13.33, complete sequence Length = 38686 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cccatctttcctctcccccc 26 |||||||||||||||||||| Sbjct: 14139 cccatctttcctctcccccc 14120
>gb|AC121109.5| Mus musculus chromosome 7, clone RP24-445I8, complete sequence Length = 167819 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tctttcctctcccccctcca 30 |||||||||||||||||||| Sbjct: 106322 tctttcctctcccccctcca 106341 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,535,795 Number of Sequences: 3902068 Number of extensions: 3535795 Number of successful extensions: 79480 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78221 Number of HSP's gapped (non-prelim): 1250 length of query: 587 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 564 effective length of database: 17,143,297,704 effective search space: 9668819905056 effective search space used: 9668819905056 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
