ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart20f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRS1_ORYSA (P83649) Salt-stress root protein RS1 130 3e-30

>SRS1_ORYSA (P83649) Salt-stress root protein RS1|
          Length = 204

 Score =  130 bits (326), Expect = 3e-30
 Identities = 73/129 (56%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
 Frame = +2

Query: 107 MTSVWKTKVLPGLSXXXXXXXXXXXXXEFLKSFNXXXXXXXXXXXXTELEPKVVETIEAS 286
           MTSVWKTKVL GL+             EFLKSFN            TELEPKVVE +E+S
Sbjct: 1   MTSVWKTKVLTGLNKLFDKDGKKAAAAEFLKSFNKEEIGKEIDDKKTELEPKVVEVVESS 60

Query: 287 PPEXXXXXXXXXXXXXXX-NSAAVIKFLDEMAKIGFPGAKLVSDAVVKSGTTPLSPAIVF 463
           PPE                N  AV KFL+E+AKI FPGAK VSDAV KSGTTPLSPAI F
Sbjct: 61  PPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAF 120

Query: 464 ILDKVAPFV 490
           IL+KVAPFV
Sbjct: 121 ILEKVAPFV 129


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,727,884
Number of Sequences: 219361
Number of extensions: 793343
Number of successful extensions: 2377
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2376
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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