ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart20f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HAG1_SCHPO (Q8X1T0) UPF0326 protein hag1 34 0.35
2CG146_ARATH (Q93VG8) UPF0326 protein At4g17486 32 1.0
3CG146_PONPY (Q5R456) UPF0326 protein CGI-146 homolog 31 3.0
4CG146_MOUSE (Q9D291) UPF0326 protein CGI-146 homolog 31 3.0
5CG146_HUMAN (Q9BSY9) UPF0326 protein CGI-146 31 3.0
6ACCN4_HUMAN (Q96FT7) Amiloride-sensitive cation channel 4 (Amilo... 30 5.0
7PCDG5_HUMAN (Q9Y5G8) Protocadherin gamma A5 precursor (PCDH-gamm... 29 8.6
8CPGL1_MOUSE (Q9D1A2) Cytosolic nonspecific dipeptidase (Glutamat... 29 8.6

>HAG1_SCHPO (Q8X1T0) UPF0326 protein hag1|
          Length = 201

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 6   NLLTNNCNHFSNEVVKFLVGSTIPSYI 86
           +LL  NCNHF+N     L GS IPS++
Sbjct: 99  SLLERNCNHFTNAAAIELTGSPIPSFL 125



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>CG146_ARATH (Q93VG8) UPF0326 protein At4g17486|
          Length = 224

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 6   NLLTNNCNHFSNEVVKFLVGSTIPSYI 86
           +L+  NCNHF+ EV   L G  IP +I
Sbjct: 119 HLIAKNCNHFTEEVCLQLTGKPIPGWI 145



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>CG146_PONPY (Q5R456) UPF0326 protein CGI-146 homolog|
          Length = 194

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 6   NLLTNNCNHFSNEVVKFLVGSTIPSYI 86
           +L+  NCNHFS+ + + L G  IP +I
Sbjct: 102 HLMHKNCNHFSSALSEILCGKEIPRWI 128



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>CG146_MOUSE (Q9D291) UPF0326 protein CGI-146 homolog|
          Length = 194

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 6   NLLTNNCNHFSNEVVKFLVGSTIPSYI 86
           +L+  NCNHFS+ + + L G  IP +I
Sbjct: 102 HLMHKNCNHFSSALSEILCGKEIPRWI 128



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>CG146_HUMAN (Q9BSY9) UPF0326 protein CGI-146|
          Length = 194

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 6   NLLTNNCNHFSNEVVKFLVGSTIPSYI 86
           +L+  NCNHFS+ + + L G  IP +I
Sbjct: 102 HLMHKNCNHFSSALSEILCGKEIPRWI 128



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>ACCN4_HUMAN (Q96FT7) Amiloride-sensitive cation channel 4 (Amiloride-sensitive|
           cation channel 4, pituitary) (Acid-sensing ion channel
           4)
          Length = 647

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = +2

Query: 188 ASTIRACSCSSGADTAFHEKHSE*NCKGCDGEQ*QRDHPACSATHTQGSGSGADTS 355
           A T       +GAD   H++  E   K    +Q QR H  C A    GSGS + TS
Sbjct: 25  AGTHAGADSCAGADKGSHKETIEERDKRQQRQQRQRQHQGCGAA---GSGSDSPTS 77



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>PCDG5_HUMAN (Q9Y5G8) Protocadherin gamma A5 precursor (PCDH-gamma-A5)|
          Length = 931

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 30  HFSNEVVKFLVGSTIPSYILDQPKEAMKSPIGALIMPMIQGLETTL 167
           HFS +VV    G   P  +L+QP +  K  +  L++  + G +  L
Sbjct: 177 HFSLDVVSGTDGQKYPELVLEQPLDREKETVHDLLLTALDGGDPVL 222



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>CPGL1_MOUSE (Q9D1A2) Cytosolic nonspecific dipeptidase (Glutamate|
           carboxypeptidase-like protein 1) (CNDP dipeptidase 2)
          Length = 475

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 194 WRLYXXXXXXXCLQPLNHRHYQCADRALHRLLGLVEDVARNRGT 63
           +++Y        +   NH HYQ   RAL  + G+  D+ R  G+
Sbjct: 374 FKVYMGHGGKPWVSDFNHPHYQAGRRALKTVFGVEPDLTREGGS 417


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,406,296
Number of Sequences: 219361
Number of extensions: 1258629
Number of successful extensions: 3973
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3968
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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